4 Works

Data from: Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin

Priscila Ambrosio Moreira, Cédric Mariac, Leila Zekraoui, Marie Couderc, Doriane Picanco Rodrigues, Charles R. Clement & Yves Vigouroux
Local people's perceptions of cultivated and wild agrobiodiversity, as well as their management of hybridization are still understudied in Amazonia. Here we analyze domesticated treegourd (Crescentia cujete), whose versatile fruits have technological, symbolic and medicinal uses. A wild relative (C. amazonica) of the cultivated species grows spontaneously in Amazonian flooded forests. We demonstrated, using whole chloroplast sequences and nuclear microsatellites, that the two species are strongly differentiated. Nonetheless, they hybridize readily throughout Amazonia and the...

Data from: An in silico comparison of protocols for dated phylogenomics

Rupert A. Collins & Tomas Hrbek
In the age of genome-scale DNA sequencing, choice of molecular marker arguably remains an important decision in planning a phylogenetic study. Using published genomes from 23 primate species, we make a standardized comparison of four of the most frequently used protocols in phylogenomics, viz., targeted sequence-enrichment using ultraconserved element and exon-capture probes, and restriction-site-associated DNA sequencing (RADseq and ddRADseq). Here we present a procedure to perform in silico extractions from genomes and create directly comparable...

Data from: Is environmental legislation conserving tropical stream faunas? a large-scale assessment of local, riparian and catchment-scale influences on Amazonian stream fish

Cecília G. Leal, Jos Barlow, Toby Gardner, Robert M. Hughes, Rafael P. Leitão, Ralph Mac Nally, Philip R. Kaufmann, Silvio F. B. Ferraz, Jansen Zuanon, Felipe R. De Paula, Joice Ferreira, James R. Thomson, Gareth D. Lennox, Eurizângela P. Dary, Cristhiana P. Röpke, Paulo S. Pompeu & Toby A. Gardner
1.Agricultural expansion and intensification are major threats to tropical biodiversity. In addition to the direct removal of native vegetation, agricultural expansion often elicits other human-induced disturbances, many of which are poorly addressed by existing environmental legislation and conservation programmes. This is particularly true for tropical freshwater systems, where there is considerable uncertainty about whether a legislative focus on protecting riparian vegetation is sufficient to conserve stream fauna. 2.To assess the extent to which stream fish...

Data from: Relationships between forest cover and fish diversity in the Amazon River floodplain

Caroline C. Arantes, Kirk O. Winemiller, Miguel Petrere, Leandro Castello, Laura L. Hess, Carlos E.C. Freitas & Carlos E. C. Freitas
1.Habitat degradation leads to biodiversity loss and concomitant changes in ecosystem processes. Tropical river floodplains are highly threatened by land cover changes and support high biodiversity and important ecosystems services, but the extent to which changes in floodplain land cover affect fish biodiversity remains unknown. 2.We combined fish and environmental data collected in situ and satellite-mapped landscape features to evaluate how fish species with different ecological strategies and assemblage structures respond to deforestation in floodplains...

Registration Year

  • 2017

Resource Types

  • Dataset


  • Federal University of Amazonas
  • National Institute of Amazonian Research
  • Oregon State University
  • Museu Paraense Emílio Goeldi
  • Federal University of Lavras
  • Universidade Federal de Minas Gerais
  • Texas A&M University
  • Universidade Federal de Mato Grosso
  • La Trobe University
  • Virginia Tech