488 Works

sj-docx-1-mso-10.1177_20552173221128170 - Supplemental material for Autoimmune diseases and cancers overlapping with myelin oligodendrocyte glycoprotein antibody-associated disease (MOGAD): A systematic review

Negar Molazadeh, Gauruv Bose, Itay Lotan & Michael Levy
Supplemental material, sj-docx-1-mso-10.1177_20552173221128170 for Autoimmune diseases and cancers overlapping with myelin oligodendrocyte glycoprotein antibody-associated disease (MOGAD): A systematic review by Negar Molazadeh, Gauruv Bose, Itay Lotan and Michael Levy in Multiple Sclerosis Journal – Experimental, Translational and Clinical

Additional file 9 of Machine learning algorithms to identify cluster randomized trials from MEDLINE and EMBASE

Ahmed A. Al-Jaishi, Monica Taljaard, Melissa D. Al-Jaishi, Sheikh S. Abdullah, Lehana Thabane, P. J. Devereaux, Stephanie N. Dixon & Amit X. Garg
Additional file 9. Details and results for applying our model on a dialysis-related dataset. Table S1. Number of relevant articles retrieved with and without machine learning algorithm using the demonstration dataset (n=882 records). The research objective was to review CRTs in the hemodialysis setting to report key methodological and ethical issues.

Additional file 1 of Natural language processing for identification of hypertrophic cardiomyopathy patients from cardiac magnetic resonance reports

Nakeya Dewaswala, David Chen, Huzefa Bhopalwala, Vinod C. Kaggal, Sean P. Murphy, J. Martijn Bos, Jeffrey B. Geske, Bernard J. Gersh, Steve R. Ommen, Philip A. Araoz, Michael J. Ackerman & Adelaide M. Arruda-Olson
Additional file 1. Supplemental Table 1. Sample of NLP system errors.

The effects of child encounters during military deployments on the well-being of military personnel: a systematic review

Natalie Ein, Jenny J. W. Liu, Stephanie A. Houle, Bethany Easterbrook, Richard Benjamin Turner, Caleb MacDonald, Kathryn Reeves, Erisa Deda, Ken Hoffer, Catherine Baillie Abidi, Anthony Nazarov & J. Don Richardson
Background: Military members report higher instances of trauma exposure and subsequent posttraumatic stress disorder (PTSD) relative to civilians. Encounters with children in war and conflict settings may have particularly unsettling consequences. However, the nature of these consequences has yet to be systematically examined. Objective: This systematic review sought to identify and document deployment-related encounters with children and associated outcomes reported by military personnel, as well as identify any current training programs, policies, or procedures in...

The effects of child encounters during military deployments on the well-being of military personnel: a systematic review

Natalie Ein, Jenny J. W. Liu, Stephanie A. Houle, Bethany Easterbrook, Richard Benjamin Turner, Caleb MacDonald, Kathryn Reeves, Erisa Deda, Ken Hoffer, Catherine Baillie Abidi, Anthony Nazarov & J. Don Richardson
Background: Military members report higher instances of trauma exposure and subsequent posttraumatic stress disorder (PTSD) relative to civilians. Encounters with children in war and conflict settings may have particularly unsettling consequences. However, the nature of these consequences has yet to be systematically examined. Objective: This systematic review sought to identify and document deployment-related encounters with children and associated outcomes reported by military personnel, as well as identify any current training programs, policies, or procedures in...

Additional file 4 of Machine learning algorithms to identify cluster randomized trials from MEDLINE and EMBASE

Ahmed A. Al-Jaishi, Monica Taljaard, Melissa D. Al-Jaishi, Sheikh S. Abdullah, Lehana Thabane, P. J. Devereaux, Stephanie N. Dixon & Amit X. Garg
Additional file 4: Description of the gamma and c parameters. Fig. S2. This figure shows the decision boundaries and support vectors for different settings of the regularization parameter (C) and Kernel coefficient (gamma). We used the mglearn package to create this figure [27].

Supplementary document for Pump-guided Nonlinear Metasurfaces for Phase Conjugation - 6109813.pdf

Pengyu Fu & Yue Li
Addtional simulation

Additional file 1 of Elevated vascular transformation blood biomarkers in Long-COVID indicate angiogenesis as a key pathophysiological mechanism

Maitray A. Patel, Michael J. Knauer, Michael Nicholson, Mark Daley, Logan R. Van Nynatten, Claudio Martin, Eric K. Patterson, Gediminas Cepinskas, Shannon L. Seney, Verena Dobretzberger, Markus Miholits, Brian Webb & Douglas D. Fraser
Additional file 1: Table S1. Function of 16 Vascular Transformation Blood Biomarkers. Table S2. Upper and Lower Limit of Quantification (ng/mL) and the Inter- and Intra-assay %CV for 16 Vascular Transformation Blood Biomarkers. Table S3: Vascular Transformation Blood Biomarker Concentrations. Table S4. Pair-Wise Comparisons of 16 Vascular Transformation Blood Biomarkers. Table S5. Classification Accuracy (Random Forest) and Area-Under-the-Curve (ROC Curve Analyses) of 16 Vascular Transformation Blood Biomarkers. Table S6. Long-COVID Validation Cohort Outpatient Demographics and...

Data from: Familiar size affects perception differently in virtual reality and the real world

Anna M. Rzepka, Kieran J. Hussey, Margaret V. Maltz, Karsten Babin, Laurie M. Wilcox & Jody C. Culham
The promise of virtual reality as a tool for perceptual and cognitive research rests on the assumption that perception in virtual environments generalizes to the real world. Here, we conducted two experiments to compare size and distance perception between virtual reality and physical reality (Maltz et al., 2021). In Experiment 1, we used virtual reality (VR) to present dice and Rubik’s cubes at their typical sizes or reversed sizes at distances that maintained a constant...

Additional file 1 of SWI/SNF complex gene variations are associated with a higher tumor mutational burden and a better response to immune checkpoint inhibitor treatment: a pan-cancer analysis of next-generation sequencing data corresponding to 4591 cases

Yue Li, Xinhua Yang, Weijie Zhu, Yuxia Xu, Jiangjun Ma, Caiyun He & Fang Wang
Additional file 1: Fig. S1 The distributions of variant allele frequencies (VAFs) of ARID1A, ARID1B, ARID2, PBRM1, SMARCA4, and SMARCB1. The median VAFs of the above genes were 16.1%, 13.4%, 13.3%, 17.2%, 15.2%, and 16.7%, respectively. Red solid line, median; black dotted line, quartiles.

Additional file 3 of SWI/SNF complex gene variations are associated with a higher tumor mutational burden and a better response to immune checkpoint inhibitor treatment: a pan-cancer analysis of next-generation sequencing data corresponding to 4591 cases

Yue Li, Xinhua Yang, Weijie Zhu, Yuxia Xu, Jiangjun Ma, Caiyun He & Fang Wang
Additional file 3: Fig. S3 The signaling pathway enrichment of the variated genes in the SWI/SNF-mutant tumors by GO analysis. The GO analysis was performed on all the mutated genes in 1001 SWI/SNF-mutant samples.

Additional file 4 of SWI/SNF complex gene variations are associated with a higher tumor mutational burden and a better response to immune checkpoint inhibitor treatment: a pan-cancer analysis of next-generation sequencing data corresponding to 4591 cases

Yue Li, Xinhua Yang, Weijie Zhu, Yuxia Xu, Jiangjun Ma, Caiyun He & Fang Wang
Additional file 4: Table S1. Synthetic lethal interactive pairs and chemical inhibitors involving SWI/SNF members.

Additional file 2 of Pterostilbene attenuates intrauterine growth retardation-induced colon inflammation in piglets by modulating endoplasmic reticulum stress and autophagy

Yanan Chen, Hao Zhang, Yue Li, Shuli Ji, Peilu Jia & Tian Wang
Additional file 2: Table S2. Primer sequences for quantitative real-time PCR and real-time PCR analyses.

Pterostilbene attenuates intrauterine growth retardation-induced colon inflammation in piglets by modulating endoplasmic reticulum stress and autophagy

Yanan Chen, Hao Zhang, Yue Li, Shuli Ji, Peilu Jia & Tian Wang
Abstract Background Endoplasmic reticulum (ER) stress and autophagy are implicated in the pathophysiology of intestinal inflammation; however, their roles in intrauterine growth retardation (IUGR)-induced colon inflammation are unclear. This study explored the protective effects of natural stilbene pterostilbene on colon inflammation using the IUGR piglets and the tumor necrosis factor alpha (TNF-α)-treated human colonic epithelial cells (Caco-2) by targeting ER stress and autophagy. Results Both the IUGR colon and the TNF-α-treated Caco-2 cells exhibited inflammatory...

Pterostilbene attenuates intrauterine growth retardation-induced colon inflammation in piglets by modulating endoplasmic reticulum stress and autophagy

Yanan Chen, Hao Zhang, Yue Li, Shuli Ji, Peilu Jia & Tian Wang
Abstract Background Endoplasmic reticulum (ER) stress and autophagy are implicated in the pathophysiology of intestinal inflammation; however, their roles in intrauterine growth retardation (IUGR)-induced colon inflammation are unclear. This study explored the protective effects of natural stilbene pterostilbene on colon inflammation using the IUGR piglets and the tumor necrosis factor alpha (TNF-α)-treated human colonic epithelial cells (Caco-2) by targeting ER stress and autophagy. Results Both the IUGR colon and the TNF-α-treated Caco-2 cells exhibited inflammatory...

Targeted OUM1/PTPRZ1 silencing and synergetic CDT/enhanced chemical therapy toward uveal melanoma based on a dual-modal imaging-guided manganese metal–organic framework nanoparticles

Yue Li, Fang Li, Hui Pan, Xiaolin Huang, Jie Yu, Xueru Liu, Qinghao Zhang, Caiwen Xiao, He Zhang & Leilei Zhang
Abstract Metastasis and chemical resistance are the most serious problems in the treatment of highly aggressive uveal melanoma (UM). The newly identified lncRNA OUM1 is overexpressed in UM, functions as a catalyst and regulates protein tyrosine phosphatase (PTP) activity by binding to PTP receptor type Z1 (PTPRZ1), which plays an important role in cell proliferation, metastasis and chemotherapy resistance in the UM microenvironment. Hence, siRNAs that selectively knocking down the lncRNA OUM1 (siOUM1) and its...

The Living Kidney Donor Safety Study: Protocol of a Prospective Cohort Study

Amit X. Garg, Jennifer B. Arnold, Meaghan Cuerden, Christine Dipchand, Liane S. Feldman, John S. Gill, Martin Karpinski, Scott Klarenbach, Greg A. Knoll, Charmaine Lok, Matthew Miller, Mauricio Monroy-Cuadros, Christopher Nguan, G. V. Ramesh Prasad, Jessica M. Sontrop, Leroy Storsley & Neil Boudville
Background:Living kidney donation is considered generally safe in healthy individuals; however, there is a need to better understand the long-term effects of donation on blood pressure and kidney function.Objectives:To determine the risk of hypertension in healthy, normotensive adults who donate a kidney compared with healthy, normotensive non-donors with similar indicators of baseline health. We will also compare the 2 groups on the rate of decline in kidney function, the risk of albuminuria, and changes in...

Supplementary document for Pump-guided Nonlinear Metasurfaces for Phase Conjugation - 6109813.pdf

Pengyu Fu & Yue Li
Addtional simulation

sj-pdf-1-cjk-10.1177_20543581221131201 – Supplemental material for Enhance Access to Kidney Transplantation and Living Kidney Donation (EnAKT LKD): Statistical Analysis Plan of a Registry-Based, Cluster-Randomized Clinical Trial

Stephanie N. Dixon, Kyla L. Naylor, Seychelle Yohanna, Susan McKenzie, Dmitri Belenko, Peter G Blake, Candice Coghlan, Rebecca Cooper, Lori Elliott, Leah Getchell, Vincent Ki, Istvan Mucsi, Gihad Nesrallah, Rachel E. Patzer, Justin Presseau, Marian Reich, Jessica M. Sontrop, Darin Treleaven, Amy D. Waterman, Jeffrey Zaltzman & Amit X. Garg
Supplemental material, sj-pdf-1-cjk-10.1177_20543581221131201 for Enhance Access to Kidney Transplantation and Living Kidney Donation (EnAKT LKD): Statistical Analysis Plan of a Registry-Based, Cluster-Randomized Clinical Trial by Stephanie N. Dixon, Kyla L. Naylor, Seychelle Yohanna, Susan McKenzie, Dmitri Belenko, Peter G Blake, Candice Coghlan, Rebecca Cooper, Lori Elliott, Leah Getchell, Vincent Ki, Istvan Mucsi, Gihad Nesrallah, Rachel E. Patzer, Justin Presseau, Marian Reich, Jessica M. Sontrop, Darin Treleaven, Amy D. Waterman, Jeffrey Zaltzman and Amit X. Garg...

Facing hierarchy: a qualitative study of residents’ experiences in an obstetrical simulation scenario

Adam B. Garber, Glenn Posner, Taylor Roebotham, M. Dylan Bould & Taryn Taylor
Abstract Background Residents in surgical specialties face a steep hierarchy when managing medical crises. Hierarchy can negatively impact patient safety when team members are reluctant to speak up. Yet, simulation has scarcely been previously utilized to qualitatively explore the way residents in surgical specialities navigate this challenge. The study aimed to explore the experiences of residents in one surgical specialty, obstetrics and gynecology (Ob/Gyn), when challenging hierarchy, with the goal of informing future interventions to...

Additional file 1 of Facing hierarchy: a qualitative study of residents’ experiences in an obstetrical simulation scenario

Adam B. Garber, Glenn Posner, Taylor Roebotham, M. Dylan Bould & Taryn Taylor
Additional file 1. Themes and sample illustrative quotations of the communication strategies and coping mechanism categories.

Additional file 1 of Identifying common core outcome domains from core outcome sets of musculoskeletal conditions: protocol for a systematic review

Tamer S. Sabet, David B. Anderson, Peter W. Stubbs, Rachelle Buchbinder, Caroline B. Terwee, Alessandro Chiarotto, Joel Gagnier & Arianne P. Verhagen
Additional file 1. Appendix 1.

Spatio-temporal doubly periodic waves in phase-mismatched second-harmonic generation

Zhixiang Deng, Jin Zhang, Dianyuan Fan & LIFU ZHANG
In this Letter we present the analytical and numerical investigation to characterize the formation of quadratic doubly periodic waves, originating from coherent modulation instability in a dispersive quadratic media in the regime of cascading second-harmonic generation. Such an endeavor has not been undertaken before despite the growing relevance of double-periodic solutions as the precursor of highly localized wave structures. Unlike the case with cubic nonlinearity, the periodicity of these quadratic nonlinear waves can be also...

Data From: Long-term winter food supplementation shows no significant impact on reproductive performance in Mountain Chickadees in the Sierra Nevada Mountains

Benjamin Sonnenberg, Joseph Welklin, Carrie Branch, Angela Pitera, Lauren Benedict, Virginia Heinen, Dovid Kozlovsky, Eli Bridge & Vladimir Pravosudov
Supplemental feeding of wild animal populations is popular across many areas of the world and has long been considered beneficial, especially to avian taxa. Over four billion dollars are spent by hobby bird feeders in the United States each year alone. However, there is mixed evidence whether wildlife feeding is beneficial, including when it is implemented as a conservation management tool, a targeted experimental design, or an avocation. Much of the current evidence suggests that...

Three new cytotoxic annonaceous acetogenins from the seeds of Annona squamosa

Chengyao Ma, Yue Li, Jiahui Lu, Maolin Wang, Xiang Li, Jianwei Chen, Yong Chen & Wenzheng Ju
Three new annonaceous acetogenins, annotemoyin L (1), annotemoyin Y (2) and annotemoyin X, (3) were isolated from the seeds of Annona squamosa Linn. Their structures were ascertained by chemical methods and spectral data. The cytotoxic activities of compounds against three multidrug-resistant cancer cell lines were evaluated, and compound 3 exerted strong cytotoxicity against SMMC 7721/ADR (IC50 0.163 μM), A549/T (IC50 0.064 μM) and MCF-7/ADR (IC50 0.057 μM).

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