Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

Lucie Tamisier, Annelies Haegeman, Yoika Foucart, Nicolas Fouillien, Maher Al Rwahnih, Nihal Buzkan, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Marie Lefebvre, Paolo Margaria, Jean Sébastien Reynard, Kristian Stevens, Denis Kutnjak & Sébastien Massart
In the last decade, High-Throughput Sequencing (HTS) has revolutionized biology and medicine. This technology allows the sequencing of huge amount of DNA and RNA fragments at a very low price. In medicine, HTS tests for disease diagnostics are already brought into routine practice. However, the adoption in plant health diagnostics is still limited. One of the main bottlenecks is the lack of expertise and consensus on the standardization of the data analysis. The Plant Health...

Registration Year

  • 2021
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Resource Types

  • Dataset
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Affiliations

  • Institute for Sustainable Plant Protection
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  • University of Liège
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  • Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
    1
  • National Institute of Biology
    1
  • University of Bordeaux
    1
  • Instituut voor Landbouw en Visserijonderzoek
    1
  • University of California, Davis
    1