65 Works

Data from: Touch sensation by pectoral fins of the catfish Pimelodus pictus

Adam R. Hardy, Bailey M. Steinworth & Melina E. Hale
Mechanosensation is fundamental to many tetrapod limb functions yet it remains largely uninvestigated in the paired fins of fishes, the limb homologs. Here we examine whether membranous fins may function as passive structures for touch sensation in the absence of extensive fin ray movement. We investigate the pectoral fins of the pictus catfish (Pimelodus pictus), a species that lives in close association with the benthic substrate and whose fins are positioned near its ventral margin....

Data from: Divergence of the diapause transcriptome in apple maggot flies: winter regulation and post-winter transcriptional repression

Peter J. Meyers, Thomas H. Q. Powell, Kimberly K. O. Walden, Adam Shieferecke, Jeffrey L. Feder, Daniel A. Hahn, Hugh M. Robertson, Stewart H. Berlocher & Gregory J. Ragland
Duration of dormancy regulates seasonal timing in many organisms and may be modulated by day length and temperature. Though photoperiodic modulation has been well studied, temperature modulation of dormancy has received less attention. Here, we leverage genetic variation in diapause in the apple maggot fly, Rhagoletis pomonella, to test whether gene expression during winter or following spring warming regulates diapause duration. We used RNAseq to compare transcript abundance during and after simulated winter between an...

Data from: A hyperspectral image can predict tropical tree growth rates in single-species stands

T. Trevor Caughlin, Sarah J. Graves, Gregory P. Asner, Michiel Van Breugel, Jefferson S. Hall, Roberta E. Martin, Mark S. Ashton & Stephanie A. Bohlman
Remote sensing is increasingly needed to meet the critical demand for estimates of forest structure and composition at landscape to continental scales. Hyperspectral images can detect tree canopy properties, including species identity, leaf chemistry and disease. Tree growth rates are related to these measurable canopy properties but whether growth can be directly predicted from hyperspectral data remains unknown. We used a single hyperspectral image and LiDAR-derived elevation to predict growth rates for twenty tropical tree...

Data from: Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes

Sara Branco, Ke Bi, Hui-Ling Liao, Pierre Gladieux, Helene Badouin, Chris E. Ellison, Nhu H. Nguyen, Rytas Vilgalys, Kabir G. Peay, John W. Taylor, Thomas D. Bruns & Christopher E. Ellison
Recent advancements in sequencing technology allowed researchers to better address the patterns and mechanisms involved in microbial environmental adaptation at large spatial scales. Here we investigated the genomic basis of adaptation to climate at the continental scale in Suillus brevipes, an ectomycorrhizal fungus symbiotically associated with the roots of pine trees. We used genomic data from 55 individuals in seven locations across North America to perform genome scans to detect signatures of positive selection and...

Data from: Host stress hormones alter vector feeding preferences, success, and productivity

Stephanie S. Gervasi, Nathan Burkett-Cadena, Sarah C. Burgan, Aaron W. Schrey, Hassan K. Hassan, Thomas R. Unnasch & Lynn B. Martin
Stress hormones might represent a key link between individual-level infection outcome, population-level parasite transmission, and zoonotic disease risk. Although the effects of stress on immunity are well known, stress hormones could also affect host–vector interactions via modification of host behaviours or vector-feeding patterns and subsequent reproductive success. Here, we experimentally manipulated songbird stress hormones and examined subsequent feeding preferences, feeding success, and productivity of mosquito vectors in addition to defensive behaviours of hosts. Despite being...

Data from: Stimulation of the salicylic acid pathway aboveground recruits entomopathogenic nematodes belowground

Camila Cramer Filgueiras, Denis S. Willett, Alcides Moino, Martin Pareja, Fahiem El Borai, Donald W. Dickson, Lukasz L. Stelinski, Larry W. Duncan & Alcides Moino Junior
Plant defense pathways play a critical role in mediating tritrophic interactions between plants, herbivores, and natural enemies. While the impact of plant defense pathway stimulation on natural enemies has been extensively explored aboveground, belowground ramifications of plant defense pathway stimulation are equally important in regulating subterranean pests and still require more attention. Here we investigate the effect of aboveground stimulation of the salicylic acid pathway through foliar application of the elicitor methyl salicylate on belowground...

Data from: Evaluating citizen vs. professional data for modelling distributions of a rare squirrel

Courtney A. Tye, Robert A. McCleery, Robert J. Fletcher, Daniel U. Greene & Ryan S. Butryn
To realize the potential of citizens to contribute to conservation efforts through the acquisition of data for broad-scale species distribution models, scientists need to understand and minimize the influences of commonly observed sample selection bias on model performance. Yet evaluating these data with independent, planned surveys is rare, even though such evaluation is necessary for understanding and applying data to conservation decisions. We used the state-listed fox squirrel Sciurus niger in Florida, USA, to interpret...

Data from: Cold adaptation increases rates of nutrient flow and metabolic plasticity during cold exposure in Drosophila melanogaster

Caroline M. Williams, Marshall D. McCue, Nishanth E. Sunny, Andre Szejner-Sigal, Theodore J. Morgan, David B. Allison & Daniel A. Hahn
Metabolic flexibility is an important component of adaptation to stressful environments, including thermal stress and latitudinal adaptation. A long history of population genetic studies suggest that selection on core metabolic enzymes may shape life histories by altering metabolic flux. However, the direct relationship between selection on thermal stress hardiness and metabolic flux has not previously been tested. We investigated flexibility of nutrient catabolism during cold stress in Drosophila melanogaster artificially selected for fast or slow...

Data from: Genetic surfing, not allopatric divergence, explains spatial sorting of mitochondrial haplotypes in venomous coralsnakes

Jeffrey W. Streicher, Jay P. McEntee, Laura C. Drzich, Daren C. Card, Drew R. Schield, Utpal Smart, Christopher L. Parkinson, Tereza Jezkova, Eric N. Smith & Todd A. Castoe
Strong spatial sorting of genetic variation in contiguous populations is often explained by local adaptation or secondary contact following allopatric divergence. A third explanation, spatial sorting by stochastic effects of range expansion, has been considered less often though theoretical models suggest it should be widespread, if ephemeral. In a study designed to delimit species within a clade of venomous coralsnakes, we identified an unusual pattern within the Texas coral snake (Micrurus tener): strong spatial sorting...

Data from: The evolution of reproductive diversity in Afrobatrachia: a phylogenetic comparative analysis of an extensive radiation of African frogs

Daniel M. Portik & David C. Blackburn
The reproductive modes of anurans (frogs and toads) are the most diverse of terrestrial vertebrates, and a major challenge is identifying selective factors that promote the evolution or retention of reproductive modes across clades. Terrestrialized anuran breeding strategies have evolved repeatedly from the plesiomorphic fully aquatic reproductive mode, a process thought to occur through intermediate reproductive stages. Several selective forces have been proposed for the evolution of terrestrialized reproductive traits, but factors such as water...

Data from: Changing light conditions in pine rockland habitats affect the intensity and outcome of ant–plant interactions

Ian M. Jones, Suzanne Koptur, Hilma R. Gallegos, Joseph P. Tardanico, Patricia A. Trainer & Jorge Peña
Extrafloral nectar (EFN) mediates food-for-protection mutualisms between plants and ants. Such mutualisms exist within a complex web of biotic interactions, and in a framework provided by the abiotic environment. Both biotic and abiotic factors, therefore, affect the outcome of ant–plant interactions. We conducted an experiment to determine the effects of ant activity, and light intensity, on herbivory rates, growth, and reproductive fitness in Senna mexicana var. chapmanii, a perennial legume native to pine rockland habitats...

Data from: The mutational structure of metabolism in Caenorhabditis elegans

Sarah K. Davies, Armand Leroi, Austin Burt, Jacob G. Bundy & Charles F. Baer
A properly functioning organism must maintain metabolic homeostasis. Deleterious mutations degrade organismal function, presumably at least in part via effects on metabolic function. Here we present an initial investigation into the mutational structure of the Caenorhabditis elegans metabolome by means of a mutation accumulation experiment. We find that pool sizes of 29 metabolites vary greatly in their vulnerability to mutation, both in terms of the rate of accumulation of genetic variance (the mutational variance, VM)...

Data from: Taxonomic and phylogenetic determinants of functional composition of Bolivian bat assemblages

Luis F. Aguirre, Flavia A. Montaño-Centellas, M. Mercedes Gavilanez, Richard D. Stevens, Luis Acosta, Marcos F. Terán, M. Gabriela Flores-Saldaña & Aideé Vargas
Understanding diversity patterns and the potential mechanisms driving them is a fundamental goal in ecology. Examination of different dimensions of biodiversity can provide insights into the relative importance of different processes acting upon biotas to shape communities. Unfortunately, patterns of diversity are still poorly understood in hyper-diverse tropical countries. Here, we assess spatial variation of taxonomic, functional and phylogenetic diversity of bat assemblages in one of the least studied Neotropical countries, Bolivia, and determine whether...

Data from: A molecular phylogeny and revised higher-level classification for the leaf-mining moth family Gracillariidae and its implications for larval host-use evolution

Akito Y. Kawahara, David Plotkin, Issei Ohshima, Carlos Lopez-Vaamonde, Peter R. Houlihan, Jesse W. Breinholt, Atsushi Kawakita, Lei Xiao, Jerome C. Regier, Donald R. Davis, Tosio Kumata, Jay-Cheon Sohn, Jurate De Prins, Charles Mitter & JAE-CHEON SOHN
Gracillariidae are one of the most diverse families of internally feeding insects, and many species are economically important. Study of this family has been hampered by lack of a robust and comprehensive phylogeny. In the present paper, we sequenced up to 22 genes in 96 gracillariid species, representing all previously recognized subfamilies and genus groups, plus 20 outgroups representing other families and superfamilies. Following objective identification and removal of two rogue taxa, two datasets were...

Data from: Automated identification of insect vectors of Chagas disease in Brazil and Mexico: the Virtual Vector Lab

Rodrigo Gurgel-Gonçalves, Ed Komp, Lindsay P. Campbell, Ali Khalighifar, Jarrett Mellenbruch, Vagner José Mendonça, Hannah L. Owens, Keynes De La Cruz Felix, A. Townsend Peterson & Janine M. Ramsey
Identification of arthropods important in disease transmission is a crucial, yet difficult, task that can demand considerable training and experience. An important case in point is that of the 150+ species of Triatominae, vectors of Trypanosoma cruzi, causative agent of Chagas disease across the Americas. We present a fully automated system that is able to identify triatomine bugs from Mexico and Brazil with an accuracy consistently above 80%, and with considerable potential for further improvement....

Data from: Effects of reduced-impact selective logging on palm regeneration in Belize

Boris Arevalo, Jair Valladarez, Shahira Muschamp, Elma Kay, Alex Finkral, Anand Roopsind & Francis E. Putz
To assess the impacts of a low-intensity selective timber harvest on a palm community in Belize, we mapped logging infrastructure (i.e., roads, log landings, skid trails, and stumps) and measured palm regeneration 1 year after a timber harvest carried out using reduced-impact logging (RIL) practices. We sampled palms across a gradient of increasing harvest impact severity from areas not directly affected by logging, in felling gaps, on secondary and primary skid trails, and on log...

Data from: How habitat-modifying organisms structure the food web of two coastal ecosystems

Els M. Van Der Zee, Christine Angelini, Laura L. Govers, Marjolijn J. A. Christianen, Andrew H. Altieri, Karin J. Van Der Reijden, Brian R. Silliman, Johan Van De Koppel, Matthijs Van Der Geest, Jan A. Van Gils, Henk W. Van Der Veer, Theunis Piersma, Peter C. De Ruiter, Han Olff & Tjisse Van Der Heide
The diversity and structure of ecosystems has been found to depend both on trophic interactions in food webs and on other species interactions such as habitat modification and mutualism that form non-trophic interaction networks. However, quantification of the dependencies between these two main interaction networks has remained elusive. In this study, we assessed how habitat-modifying organisms affect basic food web properties by conducting in-depth empirical investigations of two ecosystems: North American temperate fringing marshes and...

Data from: The Achilles' heel hypothesis: misinformed keystone individuals impair collective learning and reduce group success

Jonathan Pruitt, Colin Wright, Carl Keiser, Alexander DeMarco, Matt Grobis, Noa Pinter-Wollman, Matthew M. Grobis, Alex E. DeMarco, Carl N. Keiser, Jonathan N. Pruitt & Colin M. Wright
Many animal societies rely on highly influential keystone individuals for proper functioning. When information quality is important for group success, such keystone individuals have the potential to diminish group performance if they possess inaccurate information. Here we test whether information quality (accurate or inaccurate) influences collective outcomes when keystone individuals are the first to acquire it. We trained keystone or generic individuals to attack or avoid novel stimuli and implanted these seed individuals within groups...

Data from: Transcriptome modulation during host shift is driven by secondary metabolites in desert Drosophila

Diego N. De Panis, Julián Padró, Pedro Furió-Tarí, Sonia Tarazona, Pablo S. Milla Carmona, Ignacio M. Soto, Hernán Dopazo, Ana Conesa & Esteban Hasson
High-throughput transcriptome studies are breaking new ground to investigate the responses that organisms deploy in alternative environments. Nevertheless, much remains to be understood about the genetic basis of host plant adaptation. Here, we investigate genome-wide expression in the fly Drosophila buzzatii raised in different conditions. This species uses decaying tissues of cactus of the genus Opuntia as primary rearing substrate and secondarily, the necrotic tissues of the columnar cactus Trichocereus terscheckii. The latter constitutes a...

Data from: A social-ecological database to advance research on infrastructure development impacts in the Brazilian Amazon

Joanna M. Tucker Lima, Denis Valle, Evandro M. Moretto, Sergio M. P. Pulice, Nadia L. Zuca, Daniel R. Roquetti, Liviam E. C. Beduschi, Amanda S. Praia, Claudia P. F. Okamoto, Vinicius L. S. Carvalhaes, Evandro A. Branco, Bruna Barbezani, Emily Labandera, Kelsie Timpe & David Kaplan
Recognized as one of the world's most vital natural and cultural resources, the Amazon faces a wide variety of threats from natural resource and infrastructure development. Within this context, rigorous scientific study of the region's complex social-ecological system is critical to inform and direct decision-making toward more sustainable environmental and social outcomes. Given the Amazon's tightly linked social and ecological components and the scope of potential development impacts, effective study of this system requires an...

Data from: Sound settlement: noise surpasses land cover in explaining breeding habitat selection of secondary cavity-nesting birds

Nathan J. Kleist, Robert P. Guralnick, Alexander Cruz & Clinton D. Francis
Birds breeding in heterogeneous landscapes select nest sites by cueing in on a variety of factors from landscape features and social information to the presence of natural enemies. We focus on determining the relative impact of anthropogenic noise on nest site occupancy, compared to amount of forest cover, which is known to strongly influence the selection process. We examine chronic, industrial noise from natural gas wells directly measured at the nest box as well as...

Data from: Horses in the Cloud: big data exploration and mining of fossil and extant Equus (Mammalia: Equidae)

Bruce J. MacFadden & Robert P. Guralnick
Extant species of the genus Equus (e.g., horses, asses, and zebras) have a widespread distribution today on all continents except Antarctica. Extinct species of Equus represented by fossils were likewise widely distributed in the Pliocene and even more so during the Pleistocene. In order to understand the efficacy of “big data” for (paleo)biogeographic analyses, location records (latitude, longitude) and fossil occurrences for the genus Equus were mined and further explored from six databases, including iDigBio,...

Data from: Machine learning for characterization of insect vector feeding

Denis S. Willett, Justin George, Nora S. Willett, Lukasz L. Stelinski & Stephen L. Lapointe
Insects that feed by ingesting plant and animal fluids cause devastating damage to humans, livestock, and agriculture worldwide, primarily by transmitting pathogens of plants and animals. The feeding processes required for successful pathogen transmission by sucking insects can be recorded by monitoring voltage changes across an insect-food source feeding circuit. The output from such monitoring has traditionally been examined manually, a slow and onerous process. We taught a computer program to automatically classify previously described...

Data from: Carbon recovery dynamics following disturbance by selective logging in Amazonian forests

Camille Piponiot, Plinio Sist, Lucas Mazzei, Marielos Peña-Claros, Francis E. Putz, Ervan Rutishauser, Alexander Shenkin, Nataly Ascarrunz, Celso P. De Azevedo, Christopher Baraloto, Mabiane França, Marcelino Guedes, Eurídice N. Honorio Coronado, Marcus V. N. D'Oliveira, Ademir R. Ruschel, Katia E. Da Silva, Eleneide Doff Sotta, Cintia R. De Souza, Edson Vidal, Thales A. P. West, Bruno Hérault & Thales AP West
When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon-wide predictions of post-logging C recovery....

Data from: Immunoglobulin detection in wild birds: effectiveness of three secondary anti-avian IgY antibodies in direct ELISAs in 41 avian species

Carol A. Fassbinder-Orth, Travis E. Wilcoxen, Tiffany Tran, Raoul K. Boughton, Jeanne M. Fair, Erik K. Hofmeister, Jennifer L. Grindstaff & Jen C. Owen
1.Immunological reagents for wild, non-model species are limited or often non-existent for many species. 2. In this study, we compare the reactivity of a new anti-passerine IgY secondary antibody with existing secondary antibodies developed for use with birds. Samples from 41 species from the following six avian orders were analysed: Anseriformes (1 family, 1 species), Columbiformes (1 family, 2 species), Galliformes (1 family, 1 species), Passeriformes (16 families, 34 species), Piciformes (1 family, 2 species)...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of Florida
  • University of California, Berkeley
  • University of California System
  • Duke University
  • United States Department of Agriculture
  • California Polytechnic State University
  • University of Kansas
  • University of Washington
  • Princeton University
  • University of Notre Dame