8 Works

Data from: Evolutionary processes driving spatial patterns of intra-specific genetic diversity in river ecosystems

Ivan Paz-Viñas, Géraldine Loot, Virginie M. Stevens, Simon Blanchet & I. Paz-Vinas
Describing, understanding and predicting the spatial distribution of genetic diversity is a central issue in biological sciences. In river landscapes, it is generally predicted that neutral genetic diversity should increase downstream, but there have been few attempts to test and validate this assumption across taxonomic groups. Moreover, it is still unclear what are the evolutionary processes that may generate this apparent spatial pattern of diversity. Here, we quantitatively synthesized published results from diverse taxa living...

Data from: Elucidating the spatio-temporal dynamics of an emerging wildlife pathogen using approximate Bayesian computation

Olivier Rey, Lisa Fourtune, Ivan Paz-Vinas, Geraldine Loot, Charlotte Veyssière, Benjamin Roche & Simon Blanchet
Emerging pathogens constitute a severe threat for human health and biodiversity. Determining the status (native or non-native) of emerging pathogens, and tracing back their spatio-temporal dynamics, is crucial to understand the eco-evolutionary factors promoting their emergence, to control their spread and mitigate their impacts. However, tracing back the spatio-temporal dynamics of emerging wildlife pathogens is challenging because (i) they are often neglected until they become sufficiently abundant and pose socio-economical concerns and (ii) their geographical...

Data from: How much would it cost to monitor farmland biodiversity in Europe?

Ilse R. Geijzendorffer, Stefano Targetti, Manuel K. Schneider, Dick J. Brus, Philippe Jeanneret, Robert H. G. Jongman, Martin Knotters, Davide Viaggi, Siyka Angelova, Michaela Arndorfer, Debra Bailey, Katalin Balzacs, András Báldim, Marion M. B. Bogers, Robert G.H. Bunce, Jean-Philippe Choisis, Peter Dennis, Sebastian Eiter, Wendy Fjellstad, Jürgen F. Friedel, Tiziano Gomiero, Arjan Griffioen, Max Kainz, Anikó Kovács-Hostyánszki, Gisela Lüscher … & András Báldi
To evaluate progress on political biodiversity objectives, biodiversity monitoring provides information on whether intended results are being achieved. Despite scientific proof that monitoring and evaluation increase the (cost) efficiency of policy measures, cost estimates for monitoring schemes are seldom available, hampering their inclusion in policy programme budgets. Empirical data collected from 12 case studies across Europe were used in a power analysis to estimate the number of farms that would need to be sampled per...

Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Bjorn Canback, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D. Costa, Jeanne Dore, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Hogberg, Tomas Johansson, Hassine-Radhouane Khouja, Kurt LaButti, Urs Lahrmann … & Francis Martin
To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall–degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose....

Data from: Highly contrasted responses of Mediterranean octocorals to climate change along a depth gradient

Isabelle Dabat-Pivotto, David Nérini, Mauatassem Masmoudi, Hichem Kara, Lamya Chaoui & Didier Aurelle
Climate change has a strong impact on marine ecosystems, including temperate species. Analysing the diversity of thermotolerance levels within species along with their genetic structure enables a better understanding of their potential response to climate change. We performed this integrative study on the Mediterranean octocoral Eunicella cavolini, with samples from different depths and by means of a common garden experiment. This species does not host photosynthetic Symbiodinium, enabling us to focus on the cnidarian response....

Data from: Influence of the larval phase on connectivity: strong differences in the genetic structure of brooders and broadcasters in the Ophioderma longicauda species complex

Alexandra A Weber, Bastien Mérigot, Sophie Valière & Anne Chenuil
Closely related species with divergent life-history traits are excellent models to infer the role of such traits in genetic diversity and connectivity. Ophioderma longicauda is a brittle star species complex composed of different genetic clusters, including brooders and broadcasters. These species diverged very recently and some of them are sympatric and ecologically syntopic, making them particularly suitable to study the consequences of their trait differences. At the scale of the geographic distribution of the broadcasters...

Data from: Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

David Secco, Chuang Wang, Huixia Shou, Matthew D. Schultz, Serge Chiarenza, Laurent Nussaume, Joseph R. Ecker, James Whelan & Ryan Lister
Cytosine DNA methylation (mC) is a genome modification that can regulate the expression of coding and non-coding genetic elements. However, little is known about the involvement of mC in response to environmental cues. Using whole genome bisulfite sequencing to assess the spatio-temporal dynamics of mC in rice grown under phosphate starvation and recovery conditions, we identified widespread phosphate starvation-induced changes in mC, preferentially localized in transposable elements (TEs) close to highly induced genes. These changes...

Data from: Dendritic connectivity shapes spatial patterns of genetic diversity: a simulation-based study

Ivan Paz-Vinas & Simon Blanchet
Landscape features notoriously affect spatial patterns of biodiversity. For instance, in dendritic ecological networks (such as river basins), dendritic connectivity has been proposed to create unique spatial patterns of biodiversity. Here, we compared genetic datasets simulated under a lattice-like, a dendritic and a circular landscape to test the influence of dendritic connectivity on neutral genetic diversity. The circular landscape had a level of connectivity similar to that of the dendritic landscape, so as to isolate...

Registration Year

  • 2015

Resource Types

  • Dataset


  • Aix-Marseille University
  • University of Toulouse
  • Centre national de la recherche scientifique
  • Helmholtz Centre for Environmental Research
  • University of Padua
  • Zhejiang University
  • Labex ARBRE
  • Estonian University of Life Sciences
  • University of Bologna
  • Lund University