18 Works

Data from: Effects of plant functional group loss on soil biota and net ecosystem exchange: a plant removal experiment in the Mongolian grassland

Dima Chen, Qingmin Pan, Yongfei Bai, Shuijin Hu, Jianhui Huang, Qibing Wang, Shahid Naeem, James J. Elser, Jianguo Wu & Xingguo Han
1. The rapid loss of global biodiversity can greatly affect the functioning of above-ground components of ecosystems. However, how such biodiversity losses affect below-ground communities and linkages to soil carbon (C) sequestration is unclear. Here we describe how losses in plant functional groups (PFGs) affect soil microbial and nematode communities and net ecosystem exchange (NEE) in a 4-year removal experiment conducted on the Mongolian plateau, the world's largest remaining natural grassland. 2. Our results demonstrated...

Data from: Long-term effect of yolk carotenoid levels on testis size in a precocial bird

Mathieu Giraudeau, Ann-Kathrin Ziegler & Barbara Tschirren
Conditions experienced during prenatal development can have long-lasting organizational effects on offspring. Maternal carotenoids deposited in the eggs of birds and other oviparous species play an important role during fast embryonic growth and chick development through their antioxidant properties. However, the long-term consequences of variation in maternal carotenoid transfer for the offspring have seldom been considered. Since plasma carotenoid levels at adulthood are known to influence testis size and yolk carotenoid levels influence the ability...

Data from: Strategic use of affiliative vocalizations by wild female baboons

Joan B. Silk, Robert M. Seyfarth & Dorothy L. Cheney
Although vocal production in non-human primates is highly constrained, individuals appear to have some control over whether to call or remain silent. We investigated how contextual factors affect the production of grunts given by wild female chacma baboons, Papio ursinus, during social interactions. Females grunted as they approached other adult females 28% of the time. Supporting previous research, females were much more likely to grunt to mothers with young infants than to females without infants....

Public COAPI Toolkit of Open Access Policy Resources

Judy Anderson, Jordan Andrade, Virginia Barbour, Jeff Belliston, Marilyn Billings, Michael Boock, Mark Christel, Amy Coughenour, Eva Cunningham, Barbara DeFelice, Kimberly Douglas, Ada Emmett, Ellen Finnie, Stephen Flynn, Bryn Geffert, Chloe Georas, Dan Heuer, Erin Jerome, Timothy Jewell, Brian Kern, Shannon Kipphut-Smith, Farley Laine, Anne Langley, Ruth Lewis, Camilla MacKay … & John Martin
The Coalition of Open Access Policy Institutions (COAPI, https://sparcopen.org/coapi ) is committed to sharing information and resources to assist in the development and implementation of institutional Open Access (OA) policies. The COAPI Toolkit includes a diverse collection of resources that COAPI members have developed in the course of their OA policy initiatives. These resources are openly accessible and published here under Creative Commons Attribution 4.0 licenses, unless otherwise noted on the resources themselves.

Data from: Incomplete control and concessions explain mating skew in male chimpanzees

Joel Bray, Anne E. Pusey & Ian C. Gilby
Sexual selection theory predicts that because male reproductive success in mammals is limited by access to females, males will attempt to defend access to mates and exclude rivals from mating. In mammals, dominance rank is correlated with male reproductive success; however, the highest-ranking (alpha) male rarely monopolizes reproduction completely. To explain why, incomplete control models propose that alpha males simply cannot control other males' access to mates. If true, then dominance rank should be a...

Data from: Chimpanzee females queue but males compete for social status

Steffen Foerster, Mathias Franz, Carson M. Murray, Ian C. Gilby, Joseph T. Feldblum, Kara K. Walker & Anne E. Pusey
Dominance hierarchies are widespread in animal social groups and often have measureable effects on individual health and reproductive success. Dominance ranks are not static individual attributes, however, but instead are influenced by two independent processes: 1) changes in hierarchy membership and 2) successful challenges of higher-ranking individuals. Understanding which of these processes dominates the dynamics of rank trajectories can provide insights into fitness benefits of within-sex competition. This question has yet to be examined systematically...

Data from: Lizards paid a greater opportunity cost to thermoregulate in a less heterogeneous environment

Christine H. Basson, Ofir Levy, , Susana Clusella-Trullas & Michael J. Angilletta
The theory of thermoregulation has developed slowly, hampering efforts to predict how individuals can buffer climate change through behaviour. Mixed results of field and laboratory experiments underscore the need to test hypotheses about thermoregulation explicitly, while measuring costs and benefits in different thermal landscapes. We simulated body temperature and energy expenditure of a virtual lizard that either thermoregulates optimally or thermoconforms in a landscape of either low or high quality (one or four basking sites,...

Data from: Reflections of the social environment in chimpanzee memory: applying rational analysis beyond humans

Jeffrey R. Stevens, Julian N. Marewski, Lael J. Schooler & Ian C. Gilby
In cognitive science, the rational analysis framework allows modelling of how physical and social environments impose information-processing demands onto cognitive systems. In humans, for example, past social contact among individuals predicts their future contact with linear and power functions. These features of the human environment constrain the optimal way to remember information and probably shape how memory records are retained and retrieved. We offer a primer on how biologists can apply rational analysis to study...

Data from: Disassembly of a tadpole community by a multi-host fungal pathogen with limited evidence of recovery

Graziella V. DiRenzo, Christian Che-Castaldo, Amanda Rugenski, Roberto Brenes, Matt R. Whiles, Catherine M. Pringle, Susan S. Kilham & Karen R. Lips
Emerging infectious diseases can cause host community disassembly, but the mechanisms driving the order of species declines and extirpations following a disease outbreak are unclear. We documented the community disassembly of a Neotropical tadpole community during a chytridiomycosis outbreak, triggered by the generalist fungal pathogen, Batrachochytrium dendrobatidis (Bd). Within the first 11 months of Bd arrival, tadpole density and occupancy rapidly declined. Rarity, in terms of tadpole occupancy and adult relative abundance, did not predict...

Data from: Diversification in wild populations of the model organism Anolis carolinensis: a genome-wide phylogeographic investigation

Joseph D. Manthey, Marc Tollis, Alan R. Lemmon, Emily Moriarty Lemmon & Stephane Boissinot
The green anole (Anolis carolinensis) is a lizard widespread throughout the southeastern United States and is a model organism for the study of reproductive behavior, physiology, neural biology, and genomics. Previous phylogeographic studies of A. carolinensis using mitochondrial DNA and small numbers of nuclear loci identified conflicting and poorly supported relationships among geographically structured clades; these inconsistencies preclude confident use of A. carolinensis evolutionary history in association with morphological, physiological, or reproductive biology studies among...

Data from: Co-adjustment of yolk antioxidants and androgens in birds

Mathieu Giraudeau & Simon Ducatez
Mothers can shape the developmental trajectory of their offspring through the transmission of resources such as hormones, antioxidants or immunoglobulins. Over the last two decades, an abundant literature on maternal effects in birds has shown that several of these compounds (i.e. androgens, glucocorticoids and antioxidants) often influence the same offspring phenotypic traits (i.e. growth, immunity or oxidative stress levels), making interaction effects between egg components a likely scenario. However, the potential interactive effects of maternally...

Data from: Developmental plasticity evolved according to specialist–generalist trade-offs in experimental populations of Drosophila melanogaster

Jacqueline Le Vinh Thuy, John M. Vandenbrooks & Michael J. Angilletta
We studied the evolution of developmental plasticity in populations of Drosophila melanogaster that evolved at either constant or fluctuating temperatures. Consistent with theory, genotypes that evolved at a constant 16°C or 25°C performed best when raised and tested at that temperature. Genotypes that evolved at fluctuating temperatures performed well at either temperature, but only when raised and tested at the same temperature. Our results confirm evolutionary patterns predicted by theory, including a loss of plasticity...

Lab Experiments for the Study of Social-Ecological Systems Supplementary Materials

Marco Janssen, Robert Holahan, Allen Lee & Elinor Ostrom
Datasets, archived configuration files, and Dockerized experiment software bundle used in https://doi.org/10.1126/science.1183532

Supplementary Material for Explaining Success and Failure in the Commons: The configural nature of Ostrom's Institutional Design Principles

Jacopo Baggio, Alain Barnett, Irene Perez-Ibarra, Ute Brady, Elicia Ratajczyk, Nathan Rollins, Cathy Rubiños, H.C. Shin, David Yu, R. Aggarwal, J.M. Anderies & M.A. Janssen
Supplementary materials, coding processes, reliability testing and results and QCA tables

Data from: Colder environments did not select for a faster metabolism during experimental evolution of Drosophila melanogaster

Lesley A. Alton, Catriona Condon, Craig Robert White & Michael J. Angilletta
The effect of temperature on the evolution of metabolism has been the subject of debate for a century; however, no consistent patterns have emerged from comparisons of metabolic rate within and among species living at different temperatures. We used experimental evolution to determine how metabolism evolves in populations of Drosophila melanogaster exposed to one of three selective treatments: a constant 16°C, a constant 25°C, or temporal fluctuations between 16 and 25°C. We tested August Krogh's...

Data from: Conditional vulnerability of plant diversity to atmospheric nitrogen deposition across the United States

Samuel M. Simkin, Edith B. Allen, William D. Bowman, Christopher M. Clark, Jayne Belnap, Matthew L. Brooks, Brian S. Cade, Scott L. Collins, Linda H. Geiser, Frank S. Gilliam, Sarah E. Jovan, Linda H. Pardo, Bethany K. Schulz, Carly J. Stevens, Katharine N. Suding, Heather L. Throop & Donald M. Waller
Atmospheric nitrogen (N) deposition has been shown to decrease plant species richness along regional deposition gradients in Europe and in experimental manipulations. However, the general response of species richness to N deposition across different vegetation types, soil conditions, and climates remains largely unknown even though responses may be contingent on these environmental factors. We assessed the effect of N deposition on herbaceous richness for 15,136 forest, woodland, shrubland, and grassland sites across the continental United...

Data from: A collection of non-human primate computed tomography scans housed in MorphoSource, a repository for 3D data

Lynn E. Copes, Lynn M. Lucas, James D. Thostenson, Hopi E. Hoekstra & Douglas M. Boyer
A dataset of high-resolution microCT scans of primate skulls (crania and mandibles) and certain postcranial elements was collected to address questions about primate skull morphology. The sample consists of 489 scans taken from 431 specimens, representing 53 species of most Primate families. These data have transformative reuse potential as such datasets are necessary for conducting high power research into primate evolution, but require significant time and funding to collect. Similar datasets were previously only available...

Supplementary Material for Challenges and opportunities in coding the Commons: problems procedures, and potential solutions in large-N comparative case studies

Elicia Ratajczyk, Ute Brady, Jacopo Baggio, A. Barnett, Irene Perez-Ibarra, Nathan Rollins, Cathy Rubiños, H.C. Shin, David Yu, R. Aggarwal, J.M. Anderies, M.A. Janssen & Jacopo Baggio
Dataset repository matrix, coding manual and protocols.

Registration Year

  • 2016

Resource Types

  • Dataset
  • Text


  • Arizona State University
  • Duke University
  • Florida State University
  • University of Pennsylvania
  • University of Washington
  • New York University Abu Dhabi
  • Columbia University
  • University of Queensland
  • University of Georgia
  • University of Lausanne