48 Works

Image Data from Transfer and Persistence of UV powder trace material

Christian Cole, Melissa Lawson, Stephanie Green, Stewart Doyle, Emma Macneill & Bethany Hamilton
Dataset of 2718 raw images taken for the study of transfer and persistence of UV powder deposited on a variety of clothing material. This dataset constitutes a ground truth for use as a model for forensic trace evidence.

Earthworm data from Sourhope field experiment site, Scotland, 1999 and 2001 [NERC Soil Biodiversity Programme]

H.O. Bishop, I.C. Grieve, J.A. Chudek & D.W. Hopkins
This set of data describes earthworm diversity in soil samples taken at the Sourhope experimental site in 1999 and 2001 by the Universities of Glasgow and Dundee. Data were collected during a project funded under the NERC Soil Biodiversity Programme. The NERC Soil Biodiversity Thematic Programme was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (now the James Hutton Institute)...

Hydrocarbon pollutant impact on spectral and biophysical properties of willow and grass species

Raquel Serrano-Calvo
Vegetation is a potential indicator of land contaminated by hydrocarbons. Remote sensing holds great potential for detecting stress in vegetation caused by the presence of hydrocarbons, but as yet this potential has not been realised, largely due to a lack of understanding of the biophysiological impacts of hydrocarbons on plant growth, and the specific spectral expression of them. Previous research has demonstrated success in laboratory simulation of hydrocarbon contamination and the analysis of the spectral...

Data from: Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera

Michelle E. Afkhami, D. Luke Mahler, Jean H. Burns, Marjorie G. Weber, Martin F. Wojciechowski, Janet Sprent & Sharon Y. Strauss
How species interactions shape global biodiversity and influence diversification is a central – but also data-hungry – question in evolutionary ecology. Microbially-based mutualisms are widespread and could cause diversification by ameliorating stress and thus allowing organisms to colonize and adapt to otherwise unsuitable habitats. Yet the role of these interactions in generating species diversity has received limited attention, especially across large taxonomic groups. In the massive angiosperm family Leguminosae, plants often associate with root-nodulating bacteria...

Data from: A metagenetics approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual

Sebastian Eves-Van Den Akker, Catherine Lilley, Alex Reid, Jon Pickup, Eric Anderson, Peter Cock, Mark Blaxter, Peter Urwin, John Jones, Vivian Blok, John T. Jones, Catherine J. Lilley, Peter E. Urwin, Vivian C. Blok & Peter J.A. Cock
Distinct populations of the potato cyst nematode (PCN) Globodera pallida exist in the UK that differ in their ability to overcome various sources of resistance. An efficient method for distinguishing between populations would enable pathogen-informed cultivar choice in the field. Science and Advice for Scottish Agriculture (SASA) annually undertake national DNA diagnostic tests to determine the presence of PCN in potato seed and ware land by extracting DNA from soil floats. These DNA samples provide...

Data from: The importance of species identity and interactions on multifunctionality depends on how ecosystem functions are valued

Eleanor M. Slade, Laura Kirwin, Thomas Bell, Christopher D. Philipson, Owen T. Lewis & Tomas Roslin
Studies investigating how biodiversity affects ecosystem functioning increasingly focus on multiple functions measured simultaneously (‘multifunctionality’). However, few such studies assess the role of species interactions, particularly under alternative environmental scenarios, despite interactions being key to ecosystem functioning. Here we address five questions of central importance to ecosystem multifunctionality using a terrestrial animal system: 1) Does the contribution of individual species differ for different ecosystem functions?; 2) Do inter-species interactions affect the delivery of single functions...

Data from: Facial attractiveness is related to women’s cortisol and body fat, but not with immune responsiveness

Markus J. Rantala, Vinet Coetzee, Fhionna R. Moore, Ilona Skrida, Sanita Kecko, Tatjana Krama, Inese Kivleniece, Indrikis Krams & I. Skrinda
Recent studies suggest that facial attractiveness indicates immune responsiveness in men and that this relationship is moderated by stress hormones which interact with testosterone levels. However, studies testing whether facial attractiveness in women signals their immune responsiveness are lacking. Here, we photographed young Latvian women, vaccinated them against hepatitis B and measured the amount of specific antibodies produced, cortisol levels and percentage body fat. Latvian men rated the attractiveness of the women's faces. Interestingly, in...

Impedance-cu-cl-boracite

Charlotte Cochard & Torsten Granzow

Aboveground carbon density plots from a logged forest, Danum Valley, Borneo, 1992-2016

M.E.J. Cutler, C.D. Philipson, D.F.R.P. Burslem, G.M. Foody, P. Lincoln, M.A. Pinard, M. Snoep, C.E. Wheeler, H. Tangki & Y.S. Wai
Data are presented for Above ground Carbon Density (ACD) estimated from a series of forest census surveys which took place from 1992 – 2016 in a mixture of logged and unlogged tropical lowland dipterocarp forest in the Ulu Segama Forest Reserve (USFR) and Danum Valley Conservation Area (DVCA), Sabah, Malaysia. Additional data on logging method, coupe and year of logging is also presented. The USFR comprises of forested land divided into coupes that were each...

Data from: Susceptibility of Macrosiphum euphorbiae to the parasitoid Aphidius ervi: larval development depends on host aphid genotype

Hannah Victoria Clarke, Daniel Cullen, Stephen Francis Hubbard & Alison Jane Karley
The potato aphid, Macrosiphum euphorbiae Thomas (Hemiptera: Aphididae: Macrosiphini), is a common polyphagous aphid in Europe and North America. However, the factors influencing potato aphid dynamics and susceptibility to natural enemies are largely undescribed, particularly in relation to facultative endosymbiotic bacteria, which can provide protection against parasitism and disease in some aphid species. This study investigated whether potato aphid susceptibility to one of its principal natural enemies, the parasitoid Aphidius ervi Haliday (Hymenoptera: Braconidae: Aphidiinae),...

Data from: Early photosynthetic eukaryotes inhabited low-salinity habitats

Patricia Sánchez-Baracaldo, John A. Raven, Davide Pisani & Andrew H. Knoll
The early evolutionary history of the chloroplast lineage remains an open question. It is widely accepted that the endosymbiosis that established the chloroplast lineage in eukaryotes can be traced back to a single event, in which a cyanobacterium was incorporated into a protistan host. It is still unclear, however, which Cyanobacteria are most closely related to the chloroplast, when the plastid lineage first evolved, and in what habitats this endosymbiotic event occurred. We present phylogenomic...

Data from: Functional C-terminally encoded peptide (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis

Sebastian Eves-Van Den Akker, Catherine J. Lilley, Hazijah B. Yusup, John T. Jones & Peter E. Urwin
Sedentary plant-parasitic nematodes (PPNs) induce and maintain an intimate relationship with their host, stimulating cells adjacent to root vascular tissue to re-differentiate into unique and metabolically active ‘feeding sites’. The interaction between PPNs and their host is mediated by nematode effectors. We describe the discovery of a large and diverse family of effector genes, encoding C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone mimics (RrCEPs), in the syncytia-forming plant parasite Rotylenchulus reniformis. The particular attributes of RrCEPs...

Data from: Leptin regulation of hippocampal synaptic function in health and disease

Andrew J. Irving & Jenni Harvey
The endocrine hormone leptin plays a key role in regulating food intake and body weight via its actions in the hypothalamus. However, leptin receptors are highly expressed in many extra-hypothalamic brain regions and evidence is growing that leptin influences many central processes including cognition. Indeed, recent studies indicate that leptin is a potential cognitive enhancer as it markedly facilitates the cellular events underlying hippocampal-dependent learning and memory, including effects on glutamate receptor trafficking, neuronal morphology...

Data from: Male mealworm beetles increase resting metabolic rate under terminal investment

Indrikis A. Krams, Tatjana Krama, Fhionna R. Moore, Inese Kivleniece, Aare Kuusik, Todd M. Freeberg, Raivo Mänd, M. J. Rantala, Janina Daukšte & Marika Mänd
Harmful parasite infestation can cause energetically costly behavioural and immunological responses, with the potential to reduce host fitness and survival. It has been hypothesized that the energetic costs of infection cause resting metabolic rate (RMR) to increase. Furthermore, under terminal investment theory, individuals exposed to pathogens should allocate resources to current reproduction when life expectancy is reduced, instead of concentrating resources on an immune defence. In this study, we activated the immune system of Tenebrio...

Social competition stimulates cognitive performance in a sex-specific manner

James Rouse, Amanda Bretman, Laurin McDowall, Zak Mitchell & Elizabeth Duncan
Social interactions are thought to be a critical driver in the evolution of cognitive ability. Cooperative interactions, such as pair bonding, rather than competitive interactions have been largely implicated in the evolution of increased cognition. This is despite competition traditionally being a very strong driver of trait evolution. Males of many species track changes in their social environment and alter their reproductive strategies in response to anticipated levels of competition. We predict this to be...

Fertile man semen parameters 2020 – an update to the data collated for the WHO semen analysis manual 2010

Martin Campbell
This dataset contains the semen parameters of a fertile man, who have achieved a pregnancy in ≤ 12 months of trying to conceive, with an abstinence period of 2-7 days, at time of semen analysis. The parameters of a semen analysis included are; Semen Volume (ml), Sperm concentration(10x6 per ml), Total sperm number (10x6 per ejaculate), Total motility (PR + NP, %), Progressive motility (PR, %), Non-progressive motility (NP, %), Immotile spermatozoa (IM, %), Vitality...

Delta-9-tetrahydrocannabinol (THC) Measurement Uncertainty Dataset

Joyce K Klu & Jane A Officer
Method validation data generated as part of quantifying the measurement uncertainty of delta-9-tetrahydrocannabinol (THC, the main active ingredient of cannabis) in whole Blood using SPE and LC/MS/MS Key words calibration curve, coverage factor, method validation, method precision, standard solution

Data from: Adiposity, compared with masculinity, serves as a more valid cue to immunocompetence in human mate choice

Markus J. Rantala, Vinet Coetzee, Fhionna R. Moore, Ilona Skrinda, Sanita Kecko, Tatjana Krama, Inese Kivleniece & Indrikis Krams
According to the “good genes” hypothesis, females choose males based on traits that indicate the male’s genetic quality in terms of disease resistance. The “immunocompetence handicap hypothesis (ICHH)” proposed that secondary sexual traits serve as indicators of male genetic quality because they indicate that males can contend with the immunosuppressive effects of testosterone. Masculinity is commonly assumed to serve as such a secondary sexual trait. Yet women do not consistently prefer masculine looking men, nor...

A phenotypic screening platform utilising human spermatozoa identifies compounds with contraceptive activity

Christopher Barratt
There is an urgent need to develop new methods for male contraception, however a major barrier to drug discovery has been the lack of validated targets and the absence of an effective high-throughput phenotypic screening system. To address this deficit, we developed a fully-automated robotic screening platform that provided quantitative evaluation of compound activity against two key attributes of human sperm function: motility and acrosome reaction. In order to accelerate contraceptive development, we screened the...

Data from: Shared and modality-specific brain regions that mediate auditory and visual word comprehension

Anne Keitel, Joachim Gross & Christoph Kayser
Visual speech carried by lip movements is an integral part of communication. Yet, it remains unclear in how far visual and acoustic speech comprehension are mediated by the same brain regions. Using multivariate classification of full-brain MEG data, we first probed where the brain represents acoustically and visually conveyed word identities. We then tested where these sensory-driven representations are predictive of participants’ trial-wise comprehension. The comprehension-relevant representations of auditory and visual speech converged only in...

Data from: Islands and streams: clusters and gene flow in wild barley populations from the Levant

Sariel Hübner, Torsten Günther, Andrew Flavell, Eyal Fridman, Andreas Graner, Abraham Korol & Karl J. Schmid
The domestication of plants frequently results in a high level of genetic differentiation between domesticated plants and their wild progenitors. This process is counteracted by gene flow between wild and domesticated plants because they are usually able to inter-mate and to exchange genes. We investigated the extent of gene flow between wild barley Hordeum spontaneum and cultivated barley Hordeum vulgare, and its effect on population structure in wild barley by analyzing a collection of 896...

Data from: Identification of candidate effector genes of Pratylenchus penetrans

Paulo Vieira, Thomas Mayer, Sebastian Eves-Van Den Akker, Dana K. Howe, Inga Zasada, Thomas Baum, Jonathan D. Eisenback, Kathryn Kamo, Thomas R. Maier & Thomas J. Baum
Pratylenchus penetrans is one of the most important species among root lesion nematodes (RLNs) due to the detrimental and economic impact that it causes in a wide range of crops. Similar to other plant-parasitic nematodes (PPNs), P. penetrans harbors a significant number of secreted proteins that play key roles during parasitism. Here we combined spatially and temporally resolved next generation sequencing datasets of P. penetrans to select a list of candidate genes aimed at the...

Interviews Discussing Interdisciplinary Collaboration in Art Science Projects

Karen Westland
This dataset contains qualitative interview data which investigated interdisciplinary collaboration between sciences and the arts (with some other broad themes for comparative analysis). Participants from the discursive group interviews were staff members at the University of Dundee (UoD) involved in the doctoral research this dataset is related to. Participants from the informal interviews were not connected to the research directly or staff of the UoD, to allow comparative analysis methods to be conducted. The dataset...

Research funding for male reproductive health and infertility in the UK and USA [2016 – 2019]

Eva Gumerova, Christopher De Jonge & Christopher Barratt
There is a paucity of data on research funding for male reproductive health. We investigated the research funding for male reproductive health and infertility by examining publicly accessible databases from the UK and US government funding agencies. Information on the funding provided to male-based and female-based research was collected using public accessed web databases from the UKRI-GTR, the NIHR’s Open Data Summary, and the US’ NIH RePORT. Funded projects that began research activity between January...

Pathogenic LRRK2 control of primary cilia and Hedgehog signaling in neurons and astrocytes of mouse brain

Shahzad Khan, Yuriko Sobu, Suzanne Pfeffer, Herschel Dhekne, Francesca Tonelli, Kerryn Berndsen & Dario Alessi
Previously, we showed that cholinergic interneurons of the dorsal striatum lose cilia in mice harboring the Parkinson’s disease associated, kinase activating, R1441C LRRK2 mutation (Dhekne et al., 2018). Here we show that this phenotype is also seen in two mouse strains carrying the most common human G2019S LRRK2 mutation. Heterozygous loss of the PPM1H phosphatase that is specific for LRRK2-phosphorylated Rab GTPases (Berndsen et al., 2019) yields the same cilia loss phenotype, strongly supporting a...

Registration Year

  • 2021
    18
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    5
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    5
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    4
  • 2015
    3
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    2
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    2
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Resource Types

  • Dataset
    44
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    2
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  • Report
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Affiliations

  • University of Dundee
    48
  • James Hutton Institute
    10
  • University of Edinburgh
    4
  • University of Leeds
    4
  • University of St Andrews
    4
  • Daugavpils University
    3
  • University of Turku
    3
  • University of Pretoria
    2
  • UK Centre for Ecology & Hydrology
    2
  • Oregon State University
    2