5 Works

Data from: Assessing species boundaries and the phylogenetic position of the rare Szechwan Ratsnake, Euprepiophis perlacea (Serpentes: Colubridae), using coalescent-based methods

Xin Chen, Ke Jiang, Peng Guo, Song Huang, Dingqi Rao, Li Ding, Hirohiko Takeuchi, Jing Che, Yaping Zhang, Edward A. Myers, Frank T. Burbrink & Ya-Ping Zhang
Delimiting species and clarifying phylogenetic relationships are the main goals of systematics. For species with questionable taxonomic status, species delimitation approaches using multi-species coalescent models with multiple loci are recommended if morphological data are unavailable or unhelpful. Moreover, these methods will also reduce subjectivity based on genetic distance or requirement of monophyletic genetic lineages. We determine the validity and phylogenetic position of a rare and long controversial species of Chinese reptile, the Szechwan ratsnake (Euprepiophis...

Data from: Comparative phylogeography in marginal seas of the northwestern Pacific

Gang Ni, Qi Li, Lingfeng Kong & Hong Yu
The maturation of marine phylogeography depends on integration of comparative information across different regions globally. The northwestern Pacific, characterized by unique tectonic setting, however, is still underrepresented. This study seeks to highlight its phylogeographical history based on available population data, focusing on three seas: the East China Sea (ECS), the South China Sea (SCS), and the Sea of Japan (SOJ). We first conducted a literature survey to evaluate current research efforts, and then re-analysed the...

Data from: Landscape genetics of leaf-toed geckos in the tropical dry forest of northern Mexico

Christopher Blair, Victor H. Jiménez Arcos, Fausto R. Mendez De La Cruz & Robert W. Murphy
Habitat fragmentation due to both natural and anthropogenic forces continues to threaten the evolution and maintenance of biological diversity. This is of particular concern in tropical regions that are experiencing elevated rates of habitat loss. Although less well-studied than tropical rain forests, tropical dry forests (TDF) contain an enormous diversity of species and continue to be threatened by anthropogenic activities including grazing and agriculture. However, little is known about the processes that shape genetic connectivity...

Data from: Shifting baselines on a tropical forest frontier: extirpations drive declines in local ecological knowledge

Zhong Kai, Teoh Shu Woan, Li Jie, Eben Goodale, Kaoru Kitajima, Robert Bagchi, Rhett D. Harrison & Zhang Kai
The value of local ecological knowledge (LEK) to conservation is increasingly recognised, but LEK is being rapidly lost as indigenous livelihoods change. Biodiversity loss is also a driver of the loss of LEK, but quantitative study is lacking. In our study landscape in SW China, a large proportion of species have been extirpated. Hence, we were interested to understand whether species extirpation might have led to an erosion of LEK and the implications this might...

Data from: PyroClean: Denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation

Ricardo Ramirez-Gonzalez, Douglas W. Yu, Catharine Bruce, Darren Heavens, Mario Caccamo & Brent C. Emerson
DatasetsThis .zip files contains two folders. The folder "Control" contains the 15 raw 454 sequence files generated from the "Test Pools" analysis detailed in Table 2 of the manuscript, and a file of 27 Sanger sequences listed in Table S1. The folder "Tenerife" contains the 6 raw 454 sequence files associated generated from the "Tenerife Forest Samples" analysis detailed in Table 3 of the manuscript.

Registration Year

  • 2013
    5

Resource Types

  • Dataset
    5

Affiliations

  • Kunming Institute of Zoology
    5
  • Royal Ontario Museum
    1
  • Earlham Institute
    1
  • National Autonomous University of Mexico
    1
  • World Agroforestry Centre
    1
  • University of East Anglia
    1
  • Kunming Institute of Botany
    1
  • Kyoto University
    1
  • University of Florida
    1
  • Chinese Academy of Sciences
    1