8 Works

Data from: Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modeling

Keiichi Fukaya, Hiroaki Murakami, Seokjin Yoon, Kenji Minami, Yutaka Osada, Satoshi Yamamoto, Reiji Masuda, Akihide Kasai, Kazushi Miyashita, Toshifumi Minamoto & Michio Kondoh
Molecular analysis of DNA left in the environment, known as environmental DNA (eDNA), has proven to be a powerful and cost-effective approach to infer occurrence of species. Nonetheless, relating measurements of eDNA concentration to population abundance remains difficult because detailed knowledge on the processes that govern spatial and temporal distribution of eDNA should be integrated to reconstruct the underlying distribution and abundance of a target species. In this study, we propose a general framework of...

Global biogeography and diversification of a group of brown seaweeds (Phaeophyceae) driven by clade-specific evolutionary processes

Christophe Vieira, Frederique Steen, Sofie D'hondt, Quinten Bafort, Cindy Fernandez-García, Brian Wysor, Lennert Tyberghein, Ana Tronholm, Lydiane Mattio, Claude Payri, Gary Saunders, Frederik Leliaert, Heroen Verbruggen & Olivier De Clerck
Aim: Historical processes that shaped current diversity patterns of seaweeds remain poorly understood. Using Dictyotales, a globally distributed order of brown seaweeds as a model, we test if historical biogeographical and diversification patterns are comparable across clades. Dictyotales contain some 22 genera, three of which, Dictyota, Lobophora and Padina, are exceptionally diverse. Specifically we test if the evolutionary processes in these clades that shaped their latitudinal diversity patterns are in line with the tropical conservatism,...

Data from: Functional diversity and trade-offs in divergent anti-predator morphologies in herbivorous insects

Tadashi Shinohara & Yasuoki Takami
Predator–prey interactions may be responsible for enormous morphological diversity in prey species. We performed predation experiments with morphological manipulations (ablation) to investigate the defensive function of dorsal spines and explanate margins in Cassidinae leaf beetles against three types of predators: assassin bugs (stinger), crab spiders (biter), and tree frogs (swallower). There was mixed support for the importance of primary defense mechanisms (i.e., preventing detection or identification). Intact spined prey possessing dorsal spines were more likely...

Phylogeographic analysis of character displacement in feeding phenotypes of snail-feeding Acoptolabrus ground beetles: Morphological measurements

Yasuoki Takami
Ecological character displacement predicts that interspecific resource competition results in greater trait divergence between species in sympatry than in allopatry. In this study, we characterize character displacement in 8 species of snail-feeding Acoptolabrus ground beetles (Coleoptera, Carabidae, genus Carabus) in the Far East. Acoptolabrus exhibit divergent feeding phenotypes, including species with a slender forebody for intruding large shells and species with stout heads and mandibles for crushing small shells. Distance measurements (in mm) deposited here...

Mind the outgroup and bare branches in total-evidence dating: a case study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae)

Tamara Spasojevic, Ilari E. Sääksjärvi, Masato Ito, Stanislav Korenko, Seraina Klopfstein, Gavin R. Broad & Martin Schwarz
Taxon sampling is a central aspect of phylogenetic study design, but it has received limited attention in the context of total-evidence dating, a widely used dating approach that directly integrates molecular and morphological information from extant and fossil taxa. We here assess the impact of commonly employed outgroup sampling schemes and missing morphological data in extant taxa on age estimates in a total-evidence dating analysis under the uniform tree prior. Our study group is Pimpliformes,...

Maternal gut microbiota in pregnancy dictates offspring metabolic phenotype

Ikuo Kimura, Junki Miyamoto, Ryuji Ohue-Kitano, Keita Watanabe, Takahiro Yamada, Masayoshi Onuki, Ryo Aoki, Yosuke Isobe, Daiji Kashihara, Daisuke Inoue, Akihiko Inaba, Yuta Takamura, Satsuki Taira, Shunsuke Kumaki, Masaki Watanabe, Masato Ito, Fumiyuki Nakagawa, Junichiro Irie, Hiroki Kakuta, Masakazu Shinohara, Ken Iwatsuki, Gozoh Tsujimoto, Hiroaki Ohno, Makoto Arita, Hiroshi Ito … & Koji Hase
Antibiotics and dietary habits can affect the gut microbial community, influencing disease susceptibility. Although the influence of microbiota on the postnatal environment has been well documented, much less is known regarding the impact of gut microbiota at the embryonic stage. Here, we show that maternal microbiota shapes the metabolic system of offspring. During pregnancy, short-chain fatty acids produced by the maternal microbiota dictate the differentiation of neural, intestinal, and pancreatic cells through embryonic GPR41 and...

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs

Toshifumi Minamoto, Kana Hayami, Masayuki Sakata, Takashi Inagawa, Jiro Okitsu, Izumi Katano, Hideyuki Doi, Katsuki Nakai, Hidetaka Ichiyanagi, Ryo Gotoh, Masaki Miya, Hirotoshi Sato & Hiroki Yamanaka
Environmental DNA (eDNA) analysis has seen rapid development in the last decade, as a novel biodiversity monitoring method. Previous studies have evaluated optimal strategies, at several experimental steps of eDNA metabarcoding, for the simultaneous detection of fish species. However, optimal sampling strategies, especially the season and the location of water sampling, have not been evaluated thoroughly. To identify optimal sampling seasons and locations, we performed sampling monthly or at two-monthly intervals throughout the year in...

Captive-bred populations of a partially migratory salmonid fish are unlikely to maintain migratory polymorphism in natural habitats

Tatsuya Tanaka, Rui Ueda & Takuya Sato
Supplementation of wild populations with captive-bred individuals is often ineffective for boosting long-term productivity of wild populations. On the other hand, it remains unknown whether supplementation can act to maintain life-history variation in natural habitats, which is also important for the long-term persistence of populations and species. Partial migration, in which both migratory and resident individuals are maintained in a population, is commonly found across animal taxa. However, human-induced habitat fragmentation continues to cause rapid...

Registration Year

  • 2020

Resource Types

  • Dataset


  • Kobe University
  • Kyoto University
  • Ghent University
  • Shiga University of Medical Science
  • Tokyo University of Agriculture and Technology
  • Roger Williams University
  • Tohoku University
  • University of Melbourne
  • Botanic Garden Meise
  • Institut de Recherche pour le Développement