327 Works

Data from: Simultaneous fMRI and EEG during the multi-source interference task

John A. Robertson, Alex W. Thomas, Frank S. Prato, Mikael Johansson & Henrietta Nittby
Background: fMRI and EEG are two non-invasive functional imaging techniques within cognitive neuroscience that have complementary advantages to obtain both temporal and spatial information. The multi-source interference task (MSIT) has been shown to generate robust activations of the dorsal anterior cingulate cortex (dACC) on both a single-subject level and in group averages, in fMRI studies. We have now simultaneously acquired fMRI and EEG during a cognitive interference task. Materials and Methods: Healthy volunteers were tested...

Data from: Identification of intraductal carcinoma of the prostate on tissue specimens using Raman micro-spectroscopy: A diagnostic accuracy case-control study with multicohort validation

Andrée-Anne Grosset, Frédérick Dallaire, Tien Nguyen, Mirela Birlea, Jahg Wong, François Daoust, Noémi Roy, André Kougioumoutzakis, Feryel Azzi, Kelly Aubertin, Samuel Kadoury, Mathieu Latour, Roula Albadine, Susan Prendeville, Paul Boutros, Michael Fraser, Rob G. Bristow, Theodorus Van Der Kwast, Michèle Orain, Hervé Brisson, Nazim Benzerdjeb, Hélène Hovington, Alain Bergeron, Yves Fradet, Bernard Tête … & Dominique Trudel
Background Prostate cancer (PC) is the most frequently diagnosed cancer in North American men. Pathologists are in critical need of accurate biomarkers to characterize PC, particularly to confirm the presence of intraductal carcinoma of the prostate (IDC-P), an aggressive histopathological variant for which therapeutic options are now available. Our aim was to identify IDC-P with Raman micro-spectroscopy and machine learning technology following a protocol suitable for routine clinical histopathology laboratories. Methods and findings We used...

Back Dominant Pain Has Equal Outcomes to Radicular Dominant Pain Following Posterior Lumbar Fusion in Adult Isthmic Spondylolisthesis: A CSORN Study

Nabeel Alnaghmoosh, Jennifer Urquhart, Ruheksh Raj, Edward Abraham, Bradley Jacobs, Philippe Phan, Michael Johnson, Jerome Paquet, Andrew Nataraj, Greg McIntosh, Charles G. Fisher, Y. Raja Rampersaud, Neil Manson, Hamilton Hall, Parham Rasoulinejad & Christopher S. Bailey
Study Design:Retrospective Cohort Study.Objectives:This study aimed to determine how the surgeon-determined and patient-rated location of predominant pain influences patient-rated outcomes at 1-year after posterior lumbar fusion in adult isthmic spondylolisthesis.Methods:We retrospectively reviewed consecutive patients prospectively enrolled in the Canadian Spine Outcomes and Research Network national registry between 2009 and 2017 that underwent posterior lumbar fusion for isthmic spondylolisthesis. Using longitudinal mixed-model repeated-measures analysis the change from baseline in patient-reported outcome measures (PROMs) at 1 year...

Experiences of the Data Monitoring Committee for the RECOVERY trial, a large-scale adaptive platform randomised trial of treatments for patients hospitalised with COVID-19

Peter A. G. Sandercock, Janet Darbyshire, David DeMets, Robert Fowler, David G. Lalloo, Mohammed Munavvar, Natalie Staplin, Adilia Warris, Janet Wittes & Jonathan R. Emberson
Abstract Aim To inform the oversight of future clinical trials during a pandemic, we summarise the experiences of the Data Monitoring Committee (DMC) for the Randomised Evaluation of COVID therapy trial (RECOVERY), a large-scale randomised adaptive platform clinical trial of treatments for hospitalised patients with COVID-19. Methods and findings During the first 24 months of the trial (March 2020 to February 2022), the DMC oversaw accumulating data for 14 treatments in adults (plus 10 in...

Supplementary material from \"Allometric scaling relationships in mouse placenta\"

Rojan Saghian, Lindsay S. Cahill, Sarah K. Debebe, Anum Rahman, Lena Serghides, Chloe R. McDonald, Andrea M. Weckman, Kevin C. Kain & John G. Sled
Fetal growth and maturation are highly intertwined with placental development during pregnancy. Here we used placental vascular morphology measurements (depth and span) as well as the umbilical artery (UA) diameter of previously published studies on three different mouse strains (C57BL6/J, CD-1 and BALB/c), which were exposed to different conditions (combination Antiretroviral Therapy—cART, chronic maternal hypoxia and malaria infection) at different embryonic days, to test the hypothesis that placental vascularization and specifically the UA size, affect...

Additional file 5 of Increased diaphragm echodensity correlates with postoperative pulmonary complications in patients after major abdominal surgery: a prospective observational study

Xin Fu, Zhen Wang, Luping Wang, Guangxuan Lv, Yisong Cheng, Bo Wang, Zhongwei Zhang, Xiaodong Jin, Yan Kang, Yongfang Zhou & Qin Wu
Supplementary Material 5

Additional file 7 of Increased diaphragm echodensity correlates with postoperative pulmonary complications in patients after major abdominal surgery: a prospective observational study

Xin Fu, Zhen Wang, Luping Wang, Guangxuan Lv, Yisong Cheng, Bo Wang, Zhongwei Zhang, Xiaodong Jin, Yan Kang, Yongfang Zhou & Qin Wu
Supplementary Material 7

Additional file 1 of Prophylactic antibiotic use during labor and delivery in China: a nationwide, multicenter, hospital-based, cross-sectional study

Qiguo Lian, Tao Zheng, Xiaona Huo, Jun Zhang & Lin Zhang
Additional file 1: Table S1. STROBE checklist for cross-sectional studies. Table S2. Missing data rate of prophylactic antibiotics use, stratified by province. Table S3. The rate of vaginal and cesarean delivery, stratified by province. Table S4. The prevalence of prophylactic antibiotic use, stratified by province and mode of delivery. Table S5. The prevalence of adherence to guidelines on antibiotic prophylaxis, stratified by province and mode of delivery. Figure S1. The rate of cesarean delivery, stratified...

Additional file 1 of Prophylactic antibiotic use during labor and delivery in China: a nationwide, multicenter, hospital-based, cross-sectional study

Qiguo Lian, Tao Zheng, Xiaona Huo, Jun Zhang & Lin Zhang
Additional file 1: Table S1. STROBE checklist for cross-sectional studies. Table S2. Missing data rate of prophylactic antibiotics use, stratified by province. Table S3. The rate of vaginal and cesarean delivery, stratified by province. Table S4. The prevalence of prophylactic antibiotic use, stratified by province and mode of delivery. Table S5. The prevalence of adherence to guidelines on antibiotic prophylaxis, stratified by province and mode of delivery. Figure S1. The rate of cesarean delivery, stratified...

Additional file 1 of LncRNA SNHG16 promotes development of oesophageal squamous cell carcinoma by interacting with EIF4A3 and modulating RhoU mRNA stability

Lihua Ren, Xin Fang, Sachin Mulmi Shrestha, Qinghua Ji, Hui Ye, Yan Liang, Yang Liu, Yadong Feng, Jingwu Dong & Ruihua Shi
Additional file 1: Figure S1. EIF4A3 was upregulated in ESCC and promoted ESCC cell proliferation and migration. (A) Relative expression of EIF4A3 in human oesophageal cancer tissues (n = 162) compared with noncancerous tissues (n = 11) and a positive correlation with SNHG16 via the GEPIA database. (B) Western blot analysis of EIF4A3 after si-NC or si-EIF4A3 transfection in ESCC cells. Mock was the blank control group. GAPDH was used as an internal control. CCK-8...

Association between childhood trauma and medication adherence among patients with major depressive disorder: the moderating role of resilience

Hongqiong Wang, Yuhua Liao, Lan Guo, Huimin Zhang, Yingli Zhang, Wenjian Lai, Kayla M. Teopiz, Weidong Song, Dongjian Zhu, Lingjiang Li, Ciyong Lu, Beifang Fan & Roger S. McIntyre
Abstract Background Suboptimal medication adherence is a major reason for failure in the management of major depressive disorder (MDD), childhood trauma might be an essential risk factor of suboptimal medication adherence. This study aimed to comprehensively explore the associations between different types of childhood trauma and medication adherence among patients with MDD, and to test whether resilience has moderating effects on the foregoing associations. Methods Participants were from the Depression Cohort in China (ChiCTR registry...

Additional file 1 of Association between childhood trauma and medication adherence among patients with major depressive disorder: the moderating role of resilience

Hongqiong Wang, Yuhua Liao, Lan Guo, Huimin Zhang, Yingli Zhang, Wenjian Lai, Kayla M. Teopiz, Weidong Song, Dongjian Zhu, Lingjiang Li, Ciyong Lu, Beifang Fan & Roger S. McIntyre
Additional file 1: eTable 1. Baseline sample characteristics between eligible and ineligible participants. eTable 2. Frequencies of responses on the MARS among the suboptimal adherence group (n=234). eFigure 1. The distribution of suboptimal adherence in the low, medium and high resilience group.

Stimulation of synaptic activity promotes TFEB-mediated clearance of pathological MAPT/Tau in cellular and mouse models of tauopathies

Yvette Akwa, Chiara Di Malta, Fátima Zallo, Elise Gondard, Adele Lunati, Lara Z. Diaz-de-Grenu, Angela Zampelli, Anne Boiret, Sara Santamaria, Maialen Martinez-Preciado, Katia Cortese, Jeffrey H. Kordower, Carlos Matute, Andres M. Lozano, Estibaliz Capetillo-Zarate, Thomas Vaccari, Carmine Settembre, Etienne E. Baulieu & Davide Tampellini
Synapses represent an important target of Alzheimer disease (AD), and alterations of their excitability are among the earliest changes associated with AD development. Synaptic activation has been shown to be protective in models of AD, and deep brain stimulation (DBS), a surgical strategy that modulates neuronal activity to treat neurological and psychiatric disorders, produced positive effects in AD patients. However, the molecular mechanisms underlying the protective role(s) of brain stimulation are still elusive. We have...

Additional file 3 of Increased diaphragm echodensity correlates with postoperative pulmonary complications in patients after major abdominal surgery: a prospective observational study

Xin Fu, Zhen Wang, Luping Wang, Guangxuan Lv, Yisong Cheng, Bo Wang, Zhongwei Zhang, Xiaodong Jin, Yan Kang, Yongfang Zhou & Qin Wu
Supplementary Material 3

Additional file 1 of Towards a potential pan-cancer prognostic signature for gene expression based on probesets and ensemble machine learning

Davide Chicco, Abbas Alameer, Sara Rahmati & Giuseppe Jurman
Additional file 1: Supplementary information.

A sequential modeling approach for predicting clinical outcomes with repeated measures

Konstantin Shestopaloff, Mayilee Canizares & J. Denise Power
The increased availability of healthcare data has made predictive modeling popular in a clinical setting. If an expected patient-specific outcome can be estimated prior to a medical intervention the healthcare costs can be reduced for both patient and provider. The nature of data used to train such predictive models is frequently longitudinal, as interventions with convalescence times or chronic conditions contain outcome measures at intermediate follow-up points. Here we outline a predictive modeling approach that...

Additional file 2 of Immunogenicity and antigenicity of a conserved fragment of the rhoptry-associated membrane antigen of Plasmodium vivax

Jieyun Ge, Qiubo Wang, Gangcheng Chen, Kokouvi Kassegne, Hangye Zhang, Jiali Yu, Jianxia Tang, Bo Wang, Feng Lu, Jun Cao, Eun-Taek Han & Yang Cheng
Additional file 2: Table S1.Information on the imported isolates of P. vivax samples used in this study.

Additional file 2 of Towards a potential pan-cancer prognostic signature for gene expression based on probesets and ensemble machine learning

Davide Chicco, Abbas Alameer, Sara Rahmati & Giuseppe Jurman
Additional file 2: Supplementary File S1.

Towards a potential pan-cancer prognostic signature for gene expression based on probesets and ensemble machine learning

Davide Chicco, Abbas Alameer, Sara Rahmati & Giuseppe Jurman
Abstract Cancer is one of the leading causes of death worldwide and can be caused by environmental aspects (for example, exposure to asbestos), by human behavior (such as smoking), or by genetic factors. To understand which genes might be involved in patients’ survival, researchers have invented prognostic genetic signatures: lists of genes that can be used in scientific analyses to predict if a patient will survive or not. In this study, we joined together five...

Additional file 3 of Increased diaphragm echodensity correlates with postoperative pulmonary complications in patients after major abdominal surgery: a prospective observational study

Xin Fu, Zhen Wang, Luping Wang, Guangxuan Lv, Yisong Cheng, Bo Wang, Zhongwei Zhang, Xiaodong Jin, Yan Kang, Yongfang Zhou & Qin Wu
Supplementary Material 3

Additional file 2 of Therapists’ perspectives on using brain-computer interface-triggered functional electrical stimulation therapy for individuals living with upper extremity paralysis: a qualitative case series study

Hope Jervis-Rademeyer, Kenneth Ong, Alexander Djuric, Sarah Munce, Kristin E. Musselman & Cesar Marquez-Chin
Additional file 2. COREQ (COnsolidated criteria for REporting Qualitative research) Checklist. Checklist that describes the inclusion and location of items considered part of research for studies involving interviews or focus groups.

Cenozoic thermal-rheological evolution of the coastal cathaysia block of East Asia: geodynamic implications

Haonan Gan, Xiao Wang, Bo Wang & Guiling Wang
The thermal-rheological structure of the continental lithosphere is an important indicator of geodynamic processes. Tectonic compression and extension may change thermal-rheological structure of lithosphere. However, the thermal-rheological evolution over geological time may be difficult to determine because of overprints of subsequent geological events. Mantle xenolith temperature and pressure conditions can differentiate the lithospheric thermal structure over geological time and indicate the lithospheric rheological strength. Chronological and temperature-pressure condition data from 11 mantle xenoliths in Cenozoic...

Supplemental Material - Fiber reinforced polypropylene composites interfacial behavior improvement fabricated by cold plasma jet SiOx nanoparticles deposition

Lin Zhang, Zhangchuan Xia, Yadong He, Chunling Xin, Yang Yu, Feng Ren & Ruixue Wang
Supplemental Material for Fiber reinforced polypropylene composites interfacial behavior improvement fabricated by cold plasma jet SiOx nanoparticles deposition by Lin Zhang, Zhangchuan Xia, Yadong He, Chunling Xin, Yang Yu, Feng Ren and Ruixue Wang in Journal of Composite Materials

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

Supplementary document for Integrating Clinical Access Limitations into iPDT Treatment Planning with PDT-SPACE - 6231715.pdf

Shuran Wang, Tina Saeidi, Lothar Lilge & Vaughn Betz
Tumor model information, visualizations of specific placements, and example xml file.

Registration Year

  • 2023
    82
  • 2022
    207
  • 2021
    21
  • 2020
    6
  • 2019
    3
  • 2018
    2
  • 2017
    1
  • 2016
    1
  • 2015
    3
  • 2012
    1

Resource Types

  • Text
    155
  • Collection
    79
  • Dataset
    76
  • Image
    14
  • Other
    2
  • Data Paper
    1

Affiliations

  • University Health Network
    327
  • University of Toronto
    280
  • Shanghai Jiao Tong University
    153
  • Tongji University
    133
  • Sichuan University
    115
  • Nanjing Medical University
    113
  • Chinese PLA General Hospital
    105
  • Renmin Hospital of Wuhan University
    98
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    95
  • Guizhou University
    95