Total Ortholog Median Matrix (TOMM): an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes

Sandra R. Maruyama, Luana A. Rogerio, Patrícia Domingues Freitas, Marta Maria Teixeira & José Marcos Ribeiro
The increasing number of available genomic data allowed the development of phylogenomic analytical tools. Current methods compile information from single gene phylogenies, whether based on topologies or multiple sequence alignments. Generally, phylogenomic analyses elect gene families or genomic regions to construct phylogenomic trees. Here, we presented an alternative approach for Phylogenomics, named TOMM (Total Ortholog Median Matrix), to construct a representative phylogram composed by amino acid distance measures of all pairwise ortholog protein sequence pairs...

Registration Year

  • 2020
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Resource Types

  • Dataset
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Affiliations

  • Federal University of São Carlos
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  • University of Sao Paulo
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  • National Institute of Allergy and Infectious Diseases
    1