7 Works

Data from: Re-assessing the diversity of negative strand RNA viruses in insects

Simon Käfer, Sofia Paraskevopoulou, Florian Zirkel, Nicolas Wieseke, Alexander Donath, Malte Petersen, Terry C. Jones, Shanlin Liu, Xin Zhou, Martin Middendorf, Sandra Junglen, Bernhard Misof & Christian Drosten
The spectrum of viruses in insects is important for subjects as diverse as public health, veterinary medicine, food production, and biodiversity conservation. The traditional interest in vector-borne diseases of humans and livestock has drawn the attention of virus studies to hematophagous insect species. However, these represent only a tiny fraction of the broad diversity of Hexapoda, the most speciose group of animals. Here, we systematically probed the diversity of negative strand RNA viruses in the...

Data from: Genome of an iconic Australian bird: High-quality assembly and linkage map of the superb fairy-wren (Malurus cyaneus)

Joshua V. Peñalba, Yuan Deng, Qi Fang, Leo Joseph, Craig Moritz & Andrew Cockburn
The superb fairy-wren, Malurus cyaneus, is one of the most iconic Australian passerine species. This species belongs to an endemic Australasian clade, Meliphagides, which diversified early in the evolution of the oscine passerines. Today, the oscine passer- ines comprise almost half of all avian species diversity. Despite the rapid increase of available bird genome assemblies, this part of the avian tree has not yet been repre- sented by a high-quality reference. To rectify that, we...

Data from: Chromosomal level reference genome of Tachypleus tridentatus provides insights into evolution and adaptation of horseshoe crabs

Li Gong, Guangyi Fan, Yandong Ren, Yongjiu Chen, Liqin Liu, Qiang Qiu, Yanli Qin, Bing-Jian Liu, Lihua Jiang, Haorong Li, Yan Zeng, Qionghua Gao, Chen Zhang, Zhongkai Wang, Hui Jiang, Jinfu Tian, He Zhang, Xin Liu, Xun Xu, Wen Wang, Zhenming Lv, Yongxin Li, Bingjian Liu & Zhenming Lü
Horseshoe crabs including Tachypleus tridentatus are a group of marine arthropods living fossil species which have existed on the earth for 500 million years. However, the genetic mechanisms underlying their unique adaptive ability are still unclear. Here, we assembled the first chromosome-level T. tridentatus genome, and proofed that this genome is of very high quality with contig N50 1.69 Mb. By comparison with other arthropods, some gene families of T. tridentatus experienced significant expansion, whichare...

Data from: Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

Akito Y. Kawahara, David Plotkin, Marianne Espeland, Karen Meusemann, Emmanuel F. A. Toussaint, Alexander Donath, France Gimnich, Paul B. Frandsen, Andreas Zwick, Mario Dos Reis, Jesse R. Barber, Ralph S. Peters, Shanlin Liu, Xin Zhou, Christoph Mayer, Lars Podsiadlowski, Caroline Storer, Jayne E. Yack, Bernhard Misof & Jesse W. Breinholt
Butterflies and moths (Lepidoptera) are one of the major super-radiations of insects, comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey, Lepidoptera play a fundamental role in almost every terrestrial ecosystem. Lepidoptera are also indicators of environmental change and serve as model organisms for research on mimicry and genetics. They have been central to the development of co-evolutionary hypotheses, such as butterflies with flowering plants, and moths' evolutionary arms race with echolocating bats....

The amount of RNA editing sites in liverwort organellar genes is correlated with GC content and nuclear PPR protein diversity

Shanshan Dong, Chaoxian Zhao, Shouzhou Zhang, Hong Wu, Weixue Mu, Tong Wei, Na Li, Tao Wan, Huan Liu, Jie Cui, Ruiliang Zhu, Bernard Goffinet & Yang Liu
RNA editing occurs in the organellar mRNAs of all land plants but the marchantioid liverworts, making liverworts a perfect group for studying the evolution of RNA editing. Here we profiled the RNA editing of 42 exemplars spanning the ordinal phylogenetic diversity of liverworts, and screened for the nuclear-encoded PPR proteins in the transcriptome assemblies of these taxa. We identified 7,428 RNA editing sites in 128 organellar genes from 31 non-marchantioid liverwort species, and characterized 25,059...

Data from: An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

Dominic A. Evangelista, Benjamin Wipfler, Olivier Béthoux, Alexander Donath, Mari Fujita, Manpreet K. Kohli, Frédéric Legendre, Shanlin Liu, Ryuichiro Machida, Berhard Misof, Ralph Peters, Lars Podsiadlowski, Jes Rust, Kai Schuette, Ward Tollenaar, Jessica L. Ware, Torsten Wappler, Xin Zhou, Karen Meusemann & Sabrina Simon
READMEREADME of Supplementary Archives and included files of Evangelista et al. 2019Evangelista_et_al_README_DRYAD.pdfSupplementary Archive 1Files included in Supplementary Archive 1, see Evangelista_et_al_README_DRYAD.pdfSupplementary_Archive_1.zipSupplementary Archive 2Files included in Supplementary Archive 2, see Evangelista_et_al_README_DRYAD.pdfSupplementary_Archive_2.zip

Data from: Natural selection and repeated patterns of molecular evolution following allopatric divergence

Yibo Dong, Shichao Chen, Shifeng Cheng, Wenbin Zhou, Qing Ma, Zhiduan Chen, Cheng-Xin Fu, Xin Liu, Yun-Peng Zhao, Pamela S. Soltis, Gane Ka-Shu Wong, Douglas E. Soltis & Jenny Xiang
Background: Geographic speciation is a major force in generating biodiversity. However, how genomes diverge over time after geographic isolation has halted gene flow has remained unclear. We examine genome-wide divergence of putatively single-copy orthologous genes (POGs) from transcriptomes in 20 allopatric species/variety pairs from diverse angiosperm clades. Sixteen of these pairs reflect the well-known eastern Asia – eastern North America floristic disjunction; these species have been isolated for different lengths of time, from the Miocene...

Registration Year

  • 2019
    7

Resource Types

  • Dataset
    7

Affiliations

  • Beijing Genomics Institute
    7
  • Zoological Research Museum Alexander Koenig
    3
  • China Agricultural University
    3
  • University of Florida
    2
  • Chinese Academy of Sciences
    2
  • Charité
    1
  • Zhejiang University
    1
  • University of Hamburg
    1
  • Huazhong University of Science and Technology
    1
  • Fairy Lake Botanical Garden
    1