497 Works

Data from: Do density-driven mating system differences explain reproductive incompatibilities between populations of a placental fish?

Matthew Schrader, Joseph Travis & Rebecca C Fuller
Matrotrophy, the provisioning of embryos between fertilization and birth, creates the potential for conflict between mothers and embryos over the level of maternal investment. This conflict is predicted to drive the evolution of reproductive isolation between populations with different mating systems. In this study we examine whether density-driven mating system differences explain the patterns of asymmetric reproductive isolation observed in previous studies involving four populations of the matrotrophic least killifish, Heterandria formosa. Minimum sire number...

Data from: CRISPR-induced distributed immunity in microbial populations

Lauren M. Childs, Whitney E. England, Mark J. Young, Joshua S. Weitz & Rachel J. Whitaker
In bacteria and archaea, viruses are the primary infectious agents, acting as virulent, often deadly pathogens. A form of adaptive immune defense known as CRISPR-Cas enables microbial cells to acquire immunity to viral pathogens by recognizing specific sequences encoded in viral genomes. The unique biology of this system results in evolutionary dynamics of host and viral diversity that cannot be fully explained by the traditional models used to describe microbe-virus coevolutionary dynamics. Here, we show...

Data from: Variability in potential to exploit different soil organic phosphorus compounds among tropical montane tree species

Brian S. Steidinger, Benjamin L. Turner, Adriana Osorio, James W. Dalling & Adriana Corrales
We hypothesized that tropical plant species with different mycorrhizal associations reduce competition for soil phosphorus (P) by specializing to exploit different soil organic P compounds. We assayed the activity of root/mycorrhizal phosphatase enzymes of four tree species with contrasting root symbiotic relationships–arbuscular mycorrhizal (angiosperm and conifer), ectomycorrhizal and non-mycorrhizal–collected from one of three soil sites within a montane tropical forest. We also measured growth and foliar P of these seedlings in an experiment with P...

Data from: Constraints on mammalian forelimb development: insights from developmental disparity

Darcy L. Ross, Jonathan D. Marcot, Keith J. Betteridge, Nanette Nasone-Yoder, C. Scott Bailey, Karen E. Sears, Darcy Ross & Nanette Nascone-Yoder
Tetrapod limb development has been studied extensively for decades, yet the strength and role of developmental constraints in this process remains unresolved. Mammals exhibit a particularly wide array of limb morphologies associated with various locomotion modes and behaviors, providing a useful system for identifying periods of developmental constraint and conserved developmental mechanisms or morphologies. In this study, landmark-based geometric morphometrics are used to investigate levels and patterns of morphological diversity (disparity) among the developing forelimbs...

Sorghum bicolor GBS: diversity study II

Patrick Brown
GBS data from diverse sorghum lines. Project funded by DOE, ARPA-E, and startup funds to PJ Brown.

Response of Soil Quality Indictors including β-glucosidase, Fluorescein Diacetate Hydrolysis and Permanganate Oxidizable Carbon

Yushu Xia & Michelle Wander
Dataset compiled by Yushu Xia and Michelle Wander for the Soil Health Institute. Data were recovered from peer reviewed literature reporting results for three soil quality indicators (SQIs) (β-glucosidase (BG), fluorescein diacetate (FDA) hydrolysis, and permanganate oxidizable carbon (POXC)) in terms of their relative response to management where soils under grassland cover, no-tillage, cover crops, residue return and organic amendments were compared to conventionally managed controls. Peer-reviewed articles published between January of 1990 and May...

MapAffil 2018 dataset -- PubMed author affiliations mapped to cities and their geocodes worldwide with extracted disciplines, inferred GRIDs, and assigned ORCIDs

Vetle Torvik
Prepared by Vetle Torvik 2021-05-07 The dataset comes as a single tab-delimited Latin-1 encoded file (only the City column uses non-ASCII characters). • How was the dataset created? The dataset is based on a snapshot of PubMed (which includes Medline and PubMed-not-Medline records) taken in December, 2018. (NLMs baseline 2018 plus updates throughout 2018). Affiliations are linked to a particular author on a particular article. Prior to 2014, NLM recorded the affiliation of the first...

Data for: An Examination of Data Reuse Practices within Highly Cited Articles of Faculty at a Research University

Heidi J Imker, Hoa Luong, William H Mischo, Mary C Schlembach & Chris Wiley
This dataset was developed as part of a study that assessed data reuse. Through bibliometric analysis, corresponding authors of highly cited papers published in 2015 at the University of Illinois at Urbana-Champaign in nine STEM disciplines were identified and then surveyed to determine if data were generated for their article and their knowledge of reuse by other researchers. Second, the corresponding authors who cited those 2015 articles were identified and surveyed to ascertain whether they...

Data from: Classical Topological Order in the Kinetics of Artificial Spin Ice

Yuyang Lao, Francesco Caravelli, Mohammed Sheikh, Joseph Sklenar, Daniel Gardeazabal, Justin D. Watts, Alan M. Albrecht, Andreas Scholl, Karin Dahmen, Cristiano Nisoli & Peter Schiffer
The dataset includes the data used in the study of Classical Topological Order in the Kinetics of Artificial Spin Ice. This includes the photoemission electron microscopy intensity measurement of artificial spin ice at different temperatures as a function of time. The data includes the raw data, the metadata, and the data cookbook. Please refer to the data cookbook for more information. Note: vertex_population.xlsx file in the meta_data_code folder can be disregarded.

Python code for cost estimation of harvesting uranium from seawater and geospatial comparison of adsorbent performance

Katherine C. Hepler

Targeted ballet program mitigates ataxia and improves agility in moderate-to-advanced multiple sclerosis

Andrew Scheidler, Dominique Kinnett-Hopkins, Yvonne Learmonth, Robert Motl & Citlali Lopez-Ortiz
TBP assessment raw data files of pre- and post- motion capture velocity and center of pressure force plate data. Labels are self-explanatory. The .mat files refer to data exported from the force plate for the time-to-stabilization assessments while the .txt files are the data collected for smoothness of gait assessments. These files do not relate to one another and are from separate assessments. Version2's files are the result from using Python code Data_Bank_Cleaner.py on version1's....

Trust in Science as a Deterrent and a Facilitator of Belief in Conspiracy Theories: Pseudoscience Preys on Audiences that Trust in Science

Ryan Palmer & Dolores Albarracin

Dataset: Ultra-sensitivity of Numerical Landscape Evolution Models to their Initial Conditions

Jeffrey Kwang & Gary Parker
This dataset contains experimental measurements used in the paper, "Ultra-sensitivity of Numerical Landscape Evolution Models to their Initial Conditions." (to be submitted). The data is taken from experimental runs in a miniature landscape model named the eXperimental Landscape Evolution (XLE) facility. In this facility, we complete five >24hr runs at 5 minute temporal resolution. Every five minutes, an planform image was capture, and a digital elevation model (DEM) was generated. For each run, images and...

Data from Species Distribution, Phylogenetic Structure, and Functional Roles of Detritius Inhabiting Fungi Across Contrasting Aquatic Environments

Andrew Miller & Daniel Raudabaugh
This dataset contains the data files for the PhD thesis entitled: Species Distribution, Phylogenetic Structure and Functional Roles of Detritus Inhabiting Fungi Across Contrasting Aquatic Environments by Daniel Bruce Raudabaugh. More specifically, it contains the forward Illumina reads for ITS1, ITS2, Beta-tubulin and LSU in addition to the index files and map files needed to process the reads in QIIME 1.9.1. The sequences represent environmental sequencing from detrital samples from Black Moshannon State park (Pennsylvania),...

CyberGIS-Jupyter HAND Example Notebook

Dandong Yin & Shaowen Wang
The dataset contains a complete example (inputs, outputs, codes, intermediate results, visualization webpage) of executing Height Above Nearest Drainage HAND workflow with CyberGIS-Jupyter.

Honeybee trophallaxis event data for The origin of heavy tails in honeybee and human interaction times

Sang Hyun Choi, Vikyath Rao, Tim Gernat, Adam Hamilton, Gene Robinson & Nigel Goldenfeld
Filtered trophallaxis interactions for two honeybee colonies, each containing 800 worker bees and one queen. Each colony consists of bees that were administered a juvenile hormone analogy, a vehicle treatment, or a sham treatment to determine the effect of colony perturbation on the duration of trophallaxis interactions. Columns one and two display the unique identifiers for each bee involved in a particular trophallaxis exchange, and columns three and four display the Unix timestamp of the...

Monet - Blue Waters Network Dataset

Jha Saurabh, Patke Archit, Showerman Mike, Enos Jeremy, Bauer Greg, Kalbarczyk Zbigniew, Iyer Ravishankar & Kramer William
This dataset contains collected and aggregated network information from NCSA’s Blue Waters system, which is comprised of 27,648 nodes connected via Cray Gemini* 3D torus (dimension 24x24x24) interconnect, from Jan/01/2017 to May/31/2017. Network performance counters for links are exposed via Cray's gpcdr (https://github.com/ovis-hpc/ovis/wiki/gpcdr-kernel-module) kernel module. Lightweight Distributed Metric Service ([LDMS](https://github.com/ovis-hpc/ovis)) is used to sampled the performance counters at 60 second intervals. Please read "README.md" file. Acknowledgement: This dataset is collected as a part of the...

Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic sampling

Jennifer E. Nowak, Andrew D. Sweet, Jason D. Weckstein & Kevin P. Johnson
Multiple sequence alignments from concatenated nuclear and mitochondrial genes and resulting phylogenetic tree files of fruit doves and their close relatives. Files include: BEAST input XML file (fruit_dove_beast_input.xml); a maximum clade credibility tree from a BEAST analysis (fruit_dove_beast_mcc.tre); concatenated multiple sequence alignment NEXUS files for the novel dataset (fruit_dove_concatenated_alignment.nex, 76 taxa, 4,277 characters) and the dataset with additional sequences (fruit_dove_plus_cibois_data_concatenated_alignment.nex, 204 taxa, 4,277 characters), both of which contain a MrBayes block including partition information; and...

Correlation Between Soil Quality Indictors including β-glucosidase, Fluorescein Diacetate Hydrolysis and Permanganate Oxidizable Carbon, and Ecosystem Functions represented by Crop Productivity and Greenhouse Gas Emissions

Yushu Xia & Michelle Wander
We summarize peer reviewed literature reporting associations between for three soil quality indicators (SQIs) (β-glucosidase (BG), fluorescein diacetate (FDA) hydrolysis, and permanganate oxidizable carbon (POXC)) and crop yield and greenhouse gas emissions. Peer-reviewed articles published between January of 1990 and May 2018 were searched using the Thomas Reuters Web of Science database (Thomas Reuters, Philadelphia, Pennsylvania) and Google Scholar to identify studies reporting results for: “β-glucosidase”, “permanganate oxidizable carbon”, “active carbon”, “readily oxidizable carbon”, or...

Data for STREETS: A Novel Camera Network Dataset for Traffic Flow

Corey Snyder & Minh Do
This dataset accompanies the paper "STREETS: A Novel Camera Network Dataset for Traffic Flow" at Neural Information Processing Systems (NeurIPS) 2019. Included are: *Over four million still images form publicly accessible cameras in Lake County, IL. The images were collected across 2.5 months in 2018 and 2019. *Directed graphs describing the camera network structure in two communities in Lake County. *Documented non-recurring traffic incidents in Lake County coinciding with the 2018 data. *Traffic counts for...

Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

Erin K. Molloy & Tandy Warnow
This repository includes scripts and datasets for the paper, "FastMulRFS: Fast and accurate species tree estimation under generic gene duplication and loss models." Note: The results from estimating species trees with ASTRID-multi (included in this repository) are *not* included in the FastMulRFS paper. We estimated species trees with ASTRID-multi in the fall of 2019, but ASTRID-multi had an important bug fix in January 2020. Therefore, the ASTRID-multi species trees in this repository should be ignored.

Honeybee F2F event data for The origin of heavy tails in honeybee and human interaction times

Sang Hyun Choi, Vikyath D. Rao, Tim Gernat, Adam R. Hamilton, Gene E. Robinson & Nigel Goldenfeld
Dataset for F2F events of honeybees. F2F events are defined as face-to-face encounters of two honeybees that are close in distance and facing each other but not connected by the proboscis, thus not engaging in trophallaxis. The first and the second columns show the unique id's of honeybees participating in F2F events. The third column shows the time at which the F2F event started while the fourth column shows the time at which it ended....

Trained models for Multilingual Joint Fine-tuning of Transformer models for identifying Trolling, Aggression and Cyberbullying at TRAC 2020

Sudhanshu Mishra, Shivangi Prasad & Shubhanshu Mishra
Models and predictions for submission to TRAC - 2020 Second Workshop on Trolling, Aggression and Cyberbullying Our approach is described in our paper titled: Mishra, Sudhanshu, Shivangi Prasad, and Shubhanshu Mishra. 2020. “Multilingual Joint Fine-Tuning of Transformer Models for Identifying Trolling, Aggression and Cyberbullying at TRAC 2020.” In Proceedings of the Second Workshop on Trolling, Aggression and Cyberbullying (TRAC-2020). The source code for training this model and more details can be found on our code...

World Values Survey and World Bank Data for measuring perceptions of expertise in developing nations

Katherine Copas
This dataset include data pulled from the World Bank 2009, the World Values Survey wave 6, Transparency International from 2009. The data were used to measure perceptions of expertise from individuals in nations that are recipients of development aid as measured by the World Bank.

SaltProc output for TAP MSR and MSBR online reprocessing depletion simulations

Andrei Rykhlevskii & Kathryn D. Huff

Registration Year

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  • University of Illinois
  • University of Illinois at Urbana Champaign
  • University of Illinois System
  • University of Illinois at Urbana-Champaign
  • University of Minnesota
  • University of Florida
  • University of Utah
  • University of Montana
  • University of Michigan-Ann Arbor
  • United States Department of Agriculture