593 Works

Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic sampling

Jennifer E. Nowak, Andrew D. Sweet, Jason D. Weckstein & Kevin P. Johnson
Multiple sequence alignments from concatenated nuclear and mitochondrial genes and resulting phylogenetic tree files of fruit doves and their close relatives. Files include: BEAST input XML file (fruit_dove_beast_input.xml); a maximum clade credibility tree from a BEAST analysis (fruit_dove_beast_mcc.tre); concatenated multiple sequence alignment NEXUS files for the novel dataset (fruit_dove_concatenated_alignment.nex, 76 taxa, 4,277 characters) and the dataset with additional sequences (fruit_dove_plus_cibois_data_concatenated_alignment.nex, 204 taxa, 4,277 characters), both of which contain a MrBayes block including partition information; and...

Data for STREETS: A Novel Camera Network Dataset for Traffic Flow

Corey Snyder & Minh Do
This dataset accompanies the paper "STREETS: A Novel Camera Network Dataset for Traffic Flow" at Neural Information Processing Systems (NeurIPS) 2019. Included are: *Over four million still images form publicly accessible cameras in Lake County, IL. The images were collected across 2.5 months in 2018 and 2019. *Directed graphs describing the camera network structure in two communities in Lake County. *Documented non-recurring traffic incidents in Lake County coinciding with the 2018 data. *Traffic counts for...

A feasibility study to test a novel approach to dietary weight loss with a focus on assisting informed decision making in food selection

Mindy Lee, Catherine Applegate, Annabelle Shaffer, Abrar Emamaddin, John Erdman & Manabu Nakamura
This small dataset is a raw data of anthropometric and dietary intake data.

Author-ity 2009 - PubMed author name disambiguated dataset

Vetle I. Torvik & Neil R. Smalheiser
Author-ity 2009 baseline dataset. Prepared by Vetle Torvik 2009-12-03 The dataset comes in the form of 18 compressed (.gz) linux text files named authority2009.part00.gz - authority2009.part17.gz. The total size should be ~17.4GB uncompressed. • How was the dataset created? The dataset is based on a snapshot of PubMed (which includes Medline and PubMed-not-Medline records) taken in July 2009. A total of 19,011,985 Article records and 61,658,514 author name instances. Each instance of an author name...

Fire and drought effects on soils invaded by Microstegium vimineum in southern Illinois

Jennifer Fraterrigo & Mara Rembelski
We measured the effects of fire or drought treatment on plant, microbial and biogeochemical responses in temperate deciduous forests invaded by the annual grass Microstegium vimineum with a history of either frequent fire or fire exclusion. Please note, on Documentation tab / Experimental or Sampling Design, “15 (XVI)” should be “16 (XVI)”.

Dataset for \"The necessity of lateral channel migration in the evolution of non-dendritic drainage networks to full dendricity and the persistence of dynamic networks\"

Jeffrey S. Kwang, Abigail L. Langston & Gary Parker
*This is the third version of the dataset*. New changes in this 3rd version: 1.replaces simulations where the initial condition consists of a sinusoidal channel with topographic perturbations with simulations where the initial condition consists of a sinusoidal channel without topographic perturbations. These simulations better illustrate the transformation of a nondendritic network into a dendritic one. 2. contains two additional simulations showing how total domain size affects the landscape's dynamism. 3. changes dataset title to...

Reproduction and hybridization in Celastrus scandens and C. orbiculatus at the Indiana Dunes National Park

David N. Zaya, Stacey A. Leicht-Young, Noel B. Pavlovic & Mary V. Ashley
These data are from an observational study and small experiment investigating reproductive biology and hybridization between two plants, Celastrus scandens L. and Celastrus orbiculatus Thunb. (Celastraceae). These data were collected during the 2008 growing season from the Indiana Dunes National Park (formerly Indiana Dunes National Lakeshore), just east of the municipality of Ogden Dunes, Indiana, USA. The five data files provide information on floral output of the two species, fertilization rate, fruit set rate, hybridization...

Multi-model urban climate projections data from: Global multi-model projections of local urban climates

Lei Zhao, Keith Oleson, Elie Bou-Zeid, Eric Scott Krayenhoff, Andrew Bray, Qing Zhu, Zhonghua Zheng, Chen Chen & Michael Oppenheimer
This dataset contains the emulated global multi-model urban climate projections under RCP 8.5 and RCP 4.5 used in the article "Global multi-model projections of local urban climates" (https://www.nature.com/articles/s41558-020-00958-8). Details about this dataset and the local urban climate emulator are described in the article. This dataset documents the monthly mean projections of urban temperatures and urban relative humidity of 26 CMIP5 Earth system models (ESMs) from 2006 to 2100 across the globe. This dataset may be...

Marsh bird occupancy of wetlands managed for waterfowl in the Midwestern USA - Analysis Inputs

Therin M. Bradshaw, Abigail G. Blake-Bradshaw, Auriel M.V. Fournier, Joseph D. Lancaster, John O'Connell, Christopher N. Jacques, Michael W. Eicholtz & Heath M Hagy
Data inputs, and scripts for the analysis detailed in Bradshaw et al, published in PlosONE 2020.

Simulated Land Allocation, Nitrogen Use, and Nitrogen Loss in the Mississippi Atchafalaya River Basin for Various RFS2 (Renewable Fuel Standard) Policy Scenarios

Kelsie Ferin, Luoye Chen, Jia Zhong, Emily Heaton, Madhu Khanna & Andy VanLoocke
Total nitrogen leaching rates were calculated over the Mississippi Atchafalaya River Basin (MARB) using an integrated economic-biophysical modeling approach. Land allocation for corn production and total nitrogen application rates were calculated for crop reporting districts using the Biofuel and Environmental Policy Analysis Model (BEPAM) for 5 RFS2 policy scenarios. These were used as input in the Integrated BIosphere Simulator-Agricultural Version (Agro-IBIS) and the Terrestrial Hydrologic Model with Biogeochemistry (THMB) to calculate the nitrogen loss. Land...

Food selection by spring-migrating green-winged teal 2016-2018

Samuel Klimas, Joshua Osborn, Joseph Lancaster, Chris Jacques, Aaron Yetter & Heath Hagy
The file contains biomass and count data of food items encountered in the digestive tract of collected green-winged teal from the Illinois River Valley during spring 2016-2018. The file also contains biomass of food items collected from core samples collected at sites where the green-winged teal were collected. Together, the consumed and availability food data are used to calculate diet selection. The data also contains information on the teal, collection, sites, and other covariates used...

Dataset for \"Quantification of Magnetic Resonance Spectroscopy data using a combined reference: Application in typically developing infants

Ryan J. Larsen, Borjan Gagoski, Sarah U. Morton, Yangming Ou, Rutvi Vyas, Jonathan Litt, P. Ellen Grant & Bradley P. Sutton

Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

Minhyuk Park, Paul Zaharias & Tandy Warnow
This dataset contains RNASim1000, Cox1-Het datasets as well as analyses of RNASim1000, Cox1-Het, and 1000M1(HF).

Wearable Microphone Impulse Responses

Ryan M. Corey, Naoki Tsuda & Andrew C. Singer
A dataset of acoustic impulse responses for microphones worn on the body. Microphones were placed at 80 positions on the body of a human subject and a plastic mannequin. The impulse responses can be used to study the acoustic effects of the body and can be convolved with sound sources to simulate wearable audio devices and microphone arrays. The dataset also includes measurements with different articles of clothing covering some of the microphones and with...

Dataset of 3D fluid phase distribution from drainage simulations (in micromodel and real rock geometry) examining inertial effects

Yu Chen, Qinjun Kang, Albert Valocchi & Hari Viswanathan
The dataset contains fluid phase distribution obtained from high-resolution drainage simulations in both a heterogenous micromodel and Bentheimer sandstone. The purpose is to investigate the influence of inertial effects on scCO2-brine displacement in complex geometries, where scCO2 is much less viscous than brine or oil meaning that the inertial effects may not be negligible. The direct numerical simulations in this work employ the continuum-surface-force based color-gradient multiple-relaxation-time lattice Boltzmann model combined with a geometrical wetting...

Machine learning enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions

John Ferguson, Samuel Fernandes, Brandon Monier, Nathan Miller, Dylan Allen, Anna Dmitrieva, Peter Schmuker, Roberto Lozano, Ravi Valluru, Edward Buckler, Michael Gore, Patrick Brown, Edgar Spalding & Andrew Leakey
This dataset contains the images of a photoperiod sensitive sorghum accession population used for a GWAS/TWAS study of leaf traits related to water use efficiency in 2016 and 2017. Raw images were produced by Optical topometry (nms files).

Photosynethic Performance Measurements in Biomass Sorghum Varietals in Central Illinois during Four Growing Seasons.

Nikhil S. Jaikumar, Samuel B. Fernandes, Andrew D.B. Leakey, Patrick J. Brown, Samantha S. Stutz, Carl Bernacchi & Stephen P. Long
In a set of field studies across four years, the effect of self-shading on photosynthetic performance in lower canopy sorghum leaves was studied at sites in Champaign County, IL. Photosynthetic parameters in upper and lower canopy leaves, carbon assimilation, electron transport, stomatal conductance, and activity of three C4-specific photosynthetic enzymes, were compared within a genetically diverse range of accessions varying widely in canopy architecture and thereby in the degree of self-shading. Accessions with erect leaves...

Dataset for Fifty Ways to Tag your Pubtypes: Multi-Tagger, a Set of Probabilistic Publication Type and Study Design Taggers to Support Biomedical Indexing and Evidence-Based Medicine

Yuanxi Fu & Jodi Schneider
This dataset contains data from extreme-disagreement analysis described in paper “Aaron M. Cohen, Jodi Schneider, Yuanxi Fu, Marian S. McDonagh, Prerna Das, Arthur W. Holt, Neil R. Smalheiser, 2021, Fifty Ways to Tag your Pubtypes: Multi-Tagger, a Set of Probabilistic Publication Type and Study Design Taggers to Support Biomedical Indexing and Evidence-Based Medicine.” In this analysis, our team experts carried out an independent formal review and consensus process for extreme disagreements between MEDLINE indexing and...

Why the Stall? Using Metabolomics to Define the Lack of Upstream Movement of Invasive Bigheaded Carp in the Illinois River

Cory Suski & Jocelyn Curtis-Quick
Bigheaded Carp have spread throughout the Mississippi River basin since the 1970s. Little has stopped the spread as carp have the ability to pass through locks and dams, and they are currently approaching the Great Lakes. However, the location of the leading edge in the Illinois River has stalled for over a decade, even though there is no barrier preventing further advancement towards the Great Lakes. Defining why carp are not moving towards the Great...

A Vector-Based Method for Drainage Network Analysis Based on LiDAR Data

Fangzheng Lyu, Zewei Xu, Xinlin Ma, Shaohua Wang, Zhiyu Li & Shaowen Wang
Drainage network analysis is fundamental to understanding the characteristics of surface hydrology. Based on elevation data, drainage network analysis is often used to extract key hydrological features like drainage networks and streamlines. Limited by raster-based data models, conventional drainage network algorithms typically allow water to flow in 4 or 8 directions (surrounding grids) from a raster grid. To resolve this limitation, this paper describes a new vector-based method for drainage network analysis that allows water...

Dataset for \"Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine\"

Tzu-Kun Hsiao & Jodi Schneider
This dataset includes five files. Descriptions of the files are given as follows: FILENAME: PubMed_retracted_publication_full_v3.tsv - Bibliographic data of retracted papers indexed in PubMed (retrieved on August 20, 2020, searched with the query "retracted publication" [PT] ). - Except for the information in the "cited_by" column, all the data is from PubMed. - PMIDs in the "cited_by" column that meet either of the two conditions below have been excluded from analyses: [1] PMIDs of the...

Data for: Evaluating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model

Nicole Riemer, Yu Yao, Matthew Dawson & Donald Dabdub
This dataset contains simulation results from PartMC-MOSAIC-CAPRAM used in the article ”Eval- uating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model”. In this V2, there are eight folders: one for urban plume simulation to provide the initial particle population for cloud processing, the other four folders are for the four cloud cycles simulated and the last two are for the coagulation cases. Within the urban plume simulation,...

Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign

Fabio Vargas
Airglow images and Meteor radar data used in the paper "Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign".

Data from: A generalist brood parasite modifies use of a host in response to reproductive success

Matthew I. M. Louder, Wendy M. Schelsky, Amber N. Albores & Jeffrey P. Hoover
Avian obligate brood parasites, which rely solely on hosts to raise their young, should choose the highest quality hosts to maximize reproductive output. Brown-headed cowbirds (Molothrus ater) are extreme host generalists, yet female cowbirds could use information based on past reproductive outcomes to make egg-laying decisions thus minimizing fitness costs associated with parasitizing low-quality hosts. We use a long-term (21 years) nest-box study of a single host, the prothonotary warbler (Protonotaria citrea), to show that...

Data from: Variability in potential to exploit different soil organic phosphorus compounds among tropical montane tree species

Brian S. Steidinger, Benjamin L. Turner, Adriana Osorio, James W. Dalling & Adriana Corrales
We hypothesized that tropical plant species with different mycorrhizal associations reduce competition for soil phosphorus (P) by specializing to exploit different soil organic P compounds. We assayed the activity of root/mycorrhizal phosphatase enzymes of four tree species with contrasting root symbiotic relationships–arbuscular mycorrhizal (angiosperm and conifer), ectomycorrhizal and non-mycorrhizal–collected from one of three soil sites within a montane tropical forest. We also measured growth and foliar P of these seedlings in an experiment with P...

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  • University of Illinois
  • University of Illinois at Urbana Champaign
  • University of Illinois Urbana-Champaign
  • University of Minnesota
  • University of Illinois System
  • University of Illinois at Urbana-Champaign
  • University of Florida
  • University of Utah
  • Iowa State University
  • University of Montana