1,170 Works

Late paleozoic–mesozoic subduction and accretion of the paleo-pacific plate: insights from the ocean plate stratigraphy of the wandashan accretionary complex, NE China

Yong Liang, Han Zheng, Huan Li, Michael W. Förster & Zhihan Li
The Wandashan accretionary complex (AC) is located in the easternmost part of Northeast China and consists of the Raohe complex in the east and Yuejinshan complex in the west. It represents an excellent location for insights into Paleo-Pacific subduction and accretion processes. However, the protolith (mainly contains Ocean Plate Stratigraphy ‘OPS’ and ophiolite) nature and tectonic evolution of the Wandashan AC are under debate. This contribution reports three representative geological sections, conducts the OPS reconstruction,...

Short divalent ethacrynic amides as pro-inhibitors of glutathione S-transferase isozyme Mu and potent sensitisers of cisplatin-resistant ovarian cancers

Bangtian Xu, Tingting Tong, Xin Wang, Fang Liu, Xiang Zhang, Xiaolei Hu, Xinpeng Li, Xiaolan Yang & Fei Liao
The linking of ethacrynic acid with ethylenediamine and 1,4-butanediamine gave EDEA and BDEA, respectively, as membrane-permeable divalent pro-inhibitors of glutathione S-transferase (GST). Their divalent glutathione conjugates showed subnanomolar inhibition and divalence-binding to GSTmu (GSTM) (PDB: 5HWL) at ∼0.35 min−1. In cisplatin-resistant SK-OV-3, COC1, SGC7901 and A549 cells, GSTM activities probed by 15 nM BDEA or EDEA revealed 5-fold and 1.0-fold increases in cisplatin-resistant SK-OV-3 and COC1 cells, respectively, in comparison with the susceptible parental cells....

Short divalent ethacrynic amides as pro-inhibitors of glutathione S-transferase isozyme Mu and potent sensitisers of cisplatin-resistant ovarian cancers

Bangtian Xu, Tingting Tong, Xin Wang, Fang Liu, Xiang Zhang, Xiaolei Hu, Xinpeng Li, Xiaolan Yang & Fei Liao
The linking of ethacrynic acid with ethylenediamine and 1,4-butanediamine gave EDEA and BDEA, respectively, as membrane-permeable divalent pro-inhibitors of glutathione S-transferase (GST). Their divalent glutathione conjugates showed subnanomolar inhibition and divalence-binding to GSTmu (GSTM) (PDB: 5HWL) at ∼0.35 min−1. In cisplatin-resistant SK-OV-3, COC1, SGC7901 and A549 cells, GSTM activities probed by 15 nM BDEA or EDEA revealed 5-fold and 1.0-fold increases in cisplatin-resistant SK-OV-3 and COC1 cells, respectively, in comparison with the susceptible parental cells....

Gamma-ray irradiation induced dislocation loops in hexagonal zirconium

Chengze Liu, Huan Li, Jianping Xu, Ge Wang, Xing Zhao, Bin Zhao & Jinping Wu
With doses simulating those received by spent nuclear fuel (SNF) facilities, gamma-ray (γ-ray) irradiation experiments were conducted on hexagonal zirconium. γ-ray irradiation–induced crystalline defects were observed in the hexagonal zirconium and characterized. Monte Carlo calculations combined with Transmission Electron Microscopy characterizations revealed that the energy of primary knock-on atoms could reach the threshold energy (Ed) of zirconium atoms and result in dislocation loops within the α-zirconium grains. The influence of γ dose on dislocation loop...

Additional file 4 of CT radiomics-based long-term survival prediction for locally advanced non-small cell lung cancer patients treated with concurrent chemoradiotherapy using features from tumor and tumor organismal environment

Nai-Bin Chen, Mai Xiong, Rui Zhou, Yin Zhou, Bo Qiu, Yi-Feng Luo, Su Zhou, Chu Chu, Qi-Wen Li, Bin Wang, Hai-Hang Jiang, Jin-Yu Guo, Kang-Qiang Peng, Chuan-Miao Xie & Hui Liu
Additional File 4. Tumor response after CCRT in the low-risk and high-risk group

CT radiomics-based long-term survival prediction for locally advanced non-small cell lung cancer patients treated with concurrent chemoradiotherapy using features from tumor and tumor organismal environment

Nai-Bin Chen, Mai Xiong, Rui Zhou, Yin Zhou, Bo Qiu, Yi-Feng Luo, Su Zhou, Chu Chu, Qi-Wen Li, Bin Wang, Hai-Hang Jiang, Jin-Yu Guo, Kang-Qiang Peng, Chuan-Miao Xie & Hui Liu
Abstract Background Definitive concurrent chemoradiotherapy (CCRT) is the standard treatment for locally advanced non-small cell lung cancer (LANSCLC) patients, but the treatment response and survival outcomes varied among these patients. We aimed to identify pretreatment computed tomography-based radiomics features extracted from tumor and tumor organismal environment (TOE) for long-term survival prediction in these patients treated with CCRT. Methods A total of 298 eligible patients were randomly assigned into the training cohort and validation cohort with...

Data and Code.zip

Haoyuan Hong, Desheng Wang, A-Xing Zhu & Yi Wang
The data and code of the paper titled "A prototype-based sampling method for spatial data sampling and its application in landslide susceptibility mapping".

Redo Total Aortic Arch Replacement in Patients with Aortic Dissection After Open-Heart Surgery and Long-Term Follow-Up Results

Feng Gao, Yipeng Ge, Yongliang Zhong, Xijing Zhuang & Junming Zhu
ABSTRACT Introduction: The objectives of this study were to investigate the main treatment strategies and long-term follow-up results of aortic dissection surgery after open-heart surgery (ADSOHS) and to analyze the risk factors that cause ADSOHS. Methods: One hundred thirty-seven patients with ADSOHS hospitalized in our hospital from January 2009 to December 2018 were selected as the research object. Long-term follow-up results, complications, mortality, and changes of cardiac function before and after operation were used to...

Redo Total Aortic Arch Replacement in Patients with Aortic Dissection After Open-Heart Surgery and Long-Term Follow-Up Results

Feng Gao, Yipeng Ge, Yongliang Zhong, Xijing Zhuang & Junming Zhu
ABSTRACT Introduction: The objectives of this study were to investigate the main treatment strategies and long-term follow-up results of aortic dissection surgery after open-heart surgery (ADSOHS) and to analyze the risk factors that cause ADSOHS. Methods: One hundred thirty-seven patients with ADSOHS hospitalized in our hospital from January 2009 to December 2018 were selected as the research object. Long-term follow-up results, complications, mortality, and changes of cardiac function before and after operation were used to...

CAFs-derived SCUBE1 promotes malignancy and stemness through the Shh/Gli1 pathway in hepatocellular carcinoma

Jungang Zhao, Rizhao Li, Jiacheng Li, Ziyan Chen, Zixia Lin, Baofu Zhang, Liming Deng, Gang Chen & Yi Wang
Abstract Background The tumour microenvironment and cirrhotic liver are excellent sources of cancer-associated fibroblasts (CAFs), which participate in carcinogenesis. Thus, it is important to clarify the crosstalk between CAFs and HCC cells and the related mechanism in regulating carcinogenesis. Methods Human hepatocellular carcinoma (HCC) tissues and matched adjacent normal tissues were obtained from HCC patients. Immunohistochemistry, Western blotting (WB) and RT–qPCR were performed to detect the expression of SCUBE1. The roles of SCUBE1 in inducing...

Additional file 1 of Transcriptome analysis of intestine from alk-SMase knockout mice reveals the effect of alk-SMase

Jiang Zhu, Lingqi Wang, Zhongwu Guo, Tao Zhang & Ping Zhang
Additional file 1. The list of differentially expressed genes

Mining and characterization of the PKS–NRPS hybrid for epicoccamide A: a mannosylated tetramate derivative from Epicoccum sp. CPCC 400996

Tao Zhang, Guowei Cai, Xiaoting Rong, Jingwen Xu, Bingya Jiang, Hao Wang, Xinxin Li, Lu Wang, Ran Zhang, Wenni He & Liyan Yu
Abstract Background Genomic analysis indicated that the genomes of ascomycetes might carry dozens of biosynthetic gene clusters (BGCs), yet many clusters have remained enigmatic. The ascomycete genus Epicoccum, belonging to the family Didymellaceae, is ubiquitous that colonizes different types of substrates and is associated with phyllosphere or decaying vegetation. Species of this genus are prolific producers of bioactive substances. The epicoccamides, as biosynthetically distinct mannosylated tetramate, were first isolated in 2003 from Epicoccum sp. In...

Additional file 2 of Comprehensive analysis of the differences between left- and right-side colorectal cancer and respective prognostic prediction

Mengye Niu, Chengyang Chen, Xian Gao, Yi Guo, Bingzhou Zhang, Xin Wang, Shihao Chen, Xupeng Niu, Chao Zhang, Like Li, Zhongxin Li, Zengren Zhao & Xia Jiang
Additional file 2: Fig. S2. (A) The comparison of immune infiltration levels between high-risk and low-risk groups in L_cancer patients, based on CIBERSORT. (B) The Stromal Score difference, Immune Score difference, ESTIMATE Score difference, and tumor purity difference between high-risk and low-risk groups in L_cancer patients. (C) The immune checkpoint-related gene expression levels in high-risk and low-risk groups in L_cancer patients. (D) The tumor mutation burden difference between high-risk and low-risk groups in L_cancer patients....

Network pharmacology and in vivo experiment-based strategy to investigate mechanisms of JingFangFuZiLiZhong formula for ulcerative colitis

Mengyuan Wang, Jianan Li, Yuzhang Yin, Liying Liu, Yifei Wang, Ying Qu, Yanqiu Hong, Shuangshuang Ji, Tao Zhang, Nan Wang, Jinlong Liu, Xu Cao, Xiaobin Zao & Shuxin Zhang
Ulcerative colitis (UC), a chronic inflammatory disease, often cause carcinogenesis, disability, and intestinal perforation. The JingFangFuZiLiZhong formula (JFFZLZ) shows a good effect against UC in the clinic. Hence, we aim to investigate the mechanisms between JFFZLZ and UC via network pharmacology data mining and in vivo experiments. We obtained active constituents and related targets from public databases. The overlapped genes between JFFZLZ and UC targets were further analysed by enrichment analysis. The active constituents and...

Additional file 1 of iTRAQ-based proteomic analysis of Deinococcus radiodurans in response to 12C6+ heavy ion irradiation

Yuan Gao, Naikang Li, Yanxia Zhou, Zhenpeng Zhang, Yao Zhang, Pengcheng Fan, Hangfan Zhou, Tao Zhang, Lei Chang, Huiying Gao, Yanchang Li, Xianjiang Kang, Qiong Xie, Zhitang Lyu & Ping Xu
Additional file 1. Preparation for iTRAQ quantitative proteomics study.

Additional file 4 of iTRAQ-based proteomic analysis of Deinococcus radiodurans in response to 12C6+ heavy ion irradiation

Yuan Gao, Naikang Li, Yanxia Zhou, Zhenpeng Zhang, Yao Zhang, Pengcheng Fan, Hangfan Zhou, Tao Zhang, Lei Chang, Huiying Gao, Yanchang Li, Xianjiang Kang, Qiong Xie, Zhitang Lyu & Ping Xu
Additional file 4. High correlation between the two technical replicates. The scatterplot of two technical replicates treated with 20/80/160 Gy heavy ion irradiation.

Additional file 5 of iTRAQ-based proteomic analysis of Deinococcus radiodurans in response to 12C6+ heavy ion irradiation

Yuan Gao, Naikang Li, Yanxia Zhou, Zhenpeng Zhang, Yao Zhang, Pengcheng Fan, Hangfan Zhou, Tao Zhang, Lei Chang, Huiying Gao, Yanchang Li, Xianjiang Kang, Qiong Xie, Zhitang Lyu & Ping Xu
Additional file 5. String analysis of 113 overlapped differential proteins in our dataset.

Additional file 7 of iTRAQ-based proteomic analysis of Deinococcus radiodurans in response to 12C6+ heavy ion irradiation

Yuan Gao, Naikang Li, Yanxia Zhou, Zhenpeng Zhang, Yao Zhang, Pengcheng Fan, Hangfan Zhou, Tao Zhang, Lei Chang, Huiying Gao, Yanchang Li, Xianjiang Kang, Qiong Xie, Zhitang Lyu & Ping Xu
Additional file 7: Supplementary file1. Preparation for iTRAQ quantitative proteomics study, related to additional file 1

Exploring Collaborative Care Effects on the Mental and Physical Health of Patients With and Without Violent Victimization Histories

Keith L. Hullenaar, Frederick P. Rivara, Jin Wang & Douglas F. Zatzick
Collaborative care is a multicomponent intervention delivered by frontline social work, nursing, and physician providers to address patients’ physical, emotional, and social needs. We argued that collaborative care may particularly benefit patients with a violent victimization history because it practices three principles of trauma-informed care: patient–provider collaboration, preventing repeat trauma in clinical and community settings, and delivering comprehensive mental and physical healthcare. We conducted an exploratory secondary data analysis of a collaborative care randomized clinical...

Additional file 2 of The H2A.Z-KDM1A complex promotes tumorigenesis by localizing in the nucleus to promote SFRP1 promoter methylation in cholangiocarcinoma cells

Qi Wang, Yongqiang Qi, Fei Xiong, Da Wang, Bing Wang & Yongjun Chen
Additional file 2: Fig. S2. The site of H2A.Z or HP1α binds to SFRP1 promoter. (A) The ChIP assay analysis of H2A.Z or HP1α enrichment in the SFRP1 promoter in HEK293T cells. IgG served as a negative control. Relative enrichment fold=[%(ChIP/Input)]/[%(IgG/Input)]. (B) Dual luciferase assays demonstrate that H2A.Z attenuates the SFRP1 promoter-controlled luciferase activity in HEK293T and ICC cells (pDNA: empty plasmid vector; pGL3: empty pGL3 plasmid vector; pDNA-H2A.Z: pcDNA-H2A.Z plasmid; SFRP1-pGL3: The SFRP1 promoter...

Additional file 5 of The H2A.Z-KDM1A complex promotes tumorigenesis by localizing in the nucleus to promote SFRP1 promoter methylation in cholangiocarcinoma cells

Qi Wang, Yongqiang Qi, Fei Xiong, Da Wang, Bing Wang & Yongjun Chen
Additional file 5. Supplement.

Additional file 10 of CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP72

Zhenguang Ying, Kaifang Wang, Junfeng Wu, Mingyu Wang, Jing Yang, Xia Wang, Guowei Zhou, Haibin Chen, Hongwu Xu, Stephen Cho Wing Sze, Feng Gao, Chunman Li & Ou Sha
Additional file 10. All Original and uncropped blots images used in manuscript.

Additional file 7 of CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP72

Zhenguang Ying, Kaifang Wang, Junfeng Wu, Mingyu Wang, Jing Yang, Xia Wang, Guowei Zhou, Haibin Chen, Hongwu Xu, Stephen Cho Wing Sze, Feng Gao, Chunman Li & Ou Sha
Additional file 7. Raw data for Table 1.

Additional file 8 of CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP72

Zhenguang Ying, Kaifang Wang, Junfeng Wu, Mingyu Wang, Jing Yang, Xia Wang, Guowei Zhou, Haibin Chen, Hongwu Xu, Stephen Cho Wing Sze, Feng Gao, Chunman Li & Ou Sha
Additional file 8. Verification reports of HCR-KO cell line.

Supplementary document for Pump-guided Nonlinear Metasurfaces for Phase Conjugation - 6109813.pdf

Pengyu Fu & Yue Li
Addtional simulation

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