6 Works

Data from: A comprehensive transcriptome of early development in yellowtail kingfish (Seriola lalandi)

Alok Patel, Phillip Dettleff, Eric Hernández, Victor Martinez & E. Hernandez
Seriola lalandi is an ecologically and economically important species that is globally distributed in temperate and subtropical marine waters. The aim of this study was to identify large numbers of genic single nucleotide polymorphisms (SNPs) and differential gene expression (DGE) related to the early development of normal and deformed S. lalandi larvae using high-throughput RNA-seq data. A de novo assembly of reads generated 40 066 genes ranging from 300 bases to 64 799 bases with...

Data from: Scale-dependent responses of pollination and seed dispersal mutualisms in a habitat transformation scenario

Francisco E. Fontúrbel, Pedro Jordano & Rodrigo Medel
Transformed habitats are the result of deliberate replacement of native species by an exotic monoculture, involving changes in biotic and abiotic conditions. Despite this, transformed habitats are becoming more common and constitute a major biodiversity change driver, little is known about the scale-dependent responses of plant-animal mutualisms. Aiming to test the multi-scale responses of pollination and seed dispersal in a habitat transformation scenario, we examined a gradient of native and transformed habitats at three spatial...

Data from: The oldest, slowest forests in the world? Exceptional biomass and slow carbon dynamics of Fitzroya cupressoides temperate rainforests in southern Chile

Rocio B. Urrutia-Jalabert, Yadvinder Malhi, Antonio Lara & Rocio Urrutia-Jalabert
Old-growth temperate rainforests are, per unit area, the largest and most long-lived stores of carbon in the terrestrial biosphere, but their carbon dynamics have rarely been described. The endangered Fitzroya cupressoides forests of southern South America include stands that are probably the oldest dense forest stands in the world, with long-lived trees and high standing biomass. We assess and compare aboveground biomass, and provide the first estimates of net primary productivity (NPP), carbon allocation and...

Data from: An integrative approach to understanding the evolution and diversity of Copiapoa (Cactaceae), a threatened endemic Chilean genus from the Atacama Desert

Isabel Larridon, Helmut E. Walter, Pablo C. Guerrero, Milén Duarte, Mauricio A. Cisternas, Carol Peña Hernández, Kenneth Bauters, Pieter Asselman, Paul Goetghebeur & Marie-Stéphanie Samain
PREMISE OF THE STUDY: Species of the endemic Chilean cactus genus Copiapoa have cylindrical or (sub)globose stems that are solitary or form (large) clusters and typically yellow flowers. Many species are threatened with extinction. Despite being icons of the Atacama Desert and well loved by cactus enthusiasts, the evolution and diversity of Copiapoa has not yet been studied using a molecular approach. METHODS: Sequence data of three plastid DNA markers (rpl32-trnL, trnH-psbA, ycf1) of 39...

Data from: Orchid phylogenomics and multiple drivers of their extraordinary diversification

Thomas J. Givnish, Daniel Spalink, Mercedes Ames, Stephanie P. Lyon, Steven J. Hunter, Alejandro Zuluaga, William J. D. Iles, Mark A. Clements, Mary T. K. Arroyo, James Leebens-Mack, Lorena Endara, Ricardo Kriebel, Kurt M. Neubig, W. Mark Whitten, Norris H. Williams & Kenneth M. Cameron
Orchids are the most diverse family of angiosperms, with over 25 000 species, more than mammals, birds and reptiles combined. Tests of hypotheses to account for such diversity have been stymied by the lack of a fully resolved broad-scale phylogeny. Here, we provide such a phylogeny, based on 75 chloroplast genes for 39 species representing all orchid subfamilies and 16 of 17 tribes, time-calibrated against 17 angiosperm fossils. A supermatrix analysis places an additional 144...

Data from: Recurrent evolution of melanism in South American felids

Alexsandra Schneider, Corneliu Henegar, Kenneth Day, Devin Absher, Constanza Napolitano, Leandro Silveira, Victor A. David, Stephen J. O’Brien, Marilyn Menotti-Raymond, Gregory S. Barsh & Eduardo Eizirik
Morphological variation in natural populations is a genomic test bed for studying the interface between molecular evolution and population genetics, but some of the most interesting questions involve non-model organisms that lack well annotated reference genomes. Many felid species exhibit polymorphism for melanism but the relative roles played by genetic drift, natural selection, and interspecies hybridization remain uncertain. We identify mutations of Agouti signaling protein (ASIP) or the Melanocortin 1 receptor (MC1R) as independent causes...

Registration Year

  • 2015
    6

Resource Types

  • Dataset
    6

Affiliations

  • University of Chile
    6
  • Ghent University
    1
  • Centre for Australian National Biodiversity Research
    1
  • University of Georgia
    1
  • University of California, Berkeley
    1
  • University of Wisconsin-Madison
    1
  • Saint Petersburg State University
    1
  • Pontifical Catholic University of Rio Grande do Sul
    1
  • University Austral de Chile
    1
  • Florida Museum of Natural History
    1