51 Works

Leading trait dimensions in flood-tolerant plants

Yingji Pan, Ellen Cieraad, Jean Armstrong, William Armstrong, Beverley Clarkson, Ole Pedersen, Eric Visser, Laurentius Voesenek & Peter Van Bodegom
Background and Aims While trait-based approaches have provided critical insights into general plant functioning, we lack a comprehensive quantitative view on plant strategies in flooded conditions. Plants adapted to flooded conditions have specific traits (e.g. root porosity, low root/shoot ratio and shoot elongation) to cope with the environmental stressors including anoxic sediments, and the subsequent presence of phytotoxic compounds. In flooded habitats, plants also respond to potential nutrient and light limitations, e.g. through the expression...

The EXCITE-network: providing access to leading-edge electron and X-ray microscopy facilities for geo-materials research

Oliver Plümper , Veerl Cnudde , Geertje ter Maat , Sylvia Walter , Richard Wessels & the EXCITE network
Understanding earth materials is critical to creating a sustainable, carbon-neutral society due to their involvement in many vital processes. Earth materials control the feasibility of subsurface energy storage, geothermal energy extraction, and are a source of critical elements. However, perturbations to geological systems can also result in hazards, such as human-induced earthquakes. If we want to tackle current, pressing scientific questions related to sustainable development for a circular economy, there is an urgent need to...

Peak Ring Magnetism: Rock- and mineral-magnetic properties of the Chicxulub impact crater

Bruno Daniel Leite Mendes , Agnes Kontny , Ksenia Gaus , Bonny Kuipers & Mark Dekkers
Large impact structures on Earth like the Chicxulub in Mexico are characterized by magnetic highs but the magneto-mineralogical origin is still poorly constrained and impact-generated melt versus hydrothermal activity models are discussed. The IODP-ICDP expedition 364 drilled into the peak ring of the Chicxulub impact crater, which is characterized by a well-developed hydrothermal system. This system was active for up to 2 Ma, reaching temperatures of 350-450°C. The main goal of our study is the...

Integrated population model for the Mallard in the Netherlands

, Eelke Jongejans, Chris A. M. Van Turnhout, Loes Van Den Bremer, Henk Van Der Jeugd & Erik Kleyheeg
Europe’s highest densities of breeding Mallards (Anas platyrhynchos) are found in the Netherlands, but the breeding population there has declined by ~30% since the 1990s. The exact cause of this decline has remained unclear. Here, we used an integrated population model to jointly analyze Mallard population survey, nest survey, duckling survival and band-recovery data. We used this approach to holistically estimate all relevant vital rates, including duckling survival rates for years for which no explicit...

The shape of aroma: X-ray CT scans of citrus fruits, their separate tissues, and their individual oil glands

Erik Amezquita, Michelle Quigley, Tim Ophelders, Danelle Seymour, Elizabeth Munch & Daniel Chitwood
From preventing scurvy to being part of religious rituals, citrus are intrinsically connected to human health and perception. From tiny mandarins to head-sized pummelos, citrus capability of hybridization provides a vastly diverse array of fruit sizes and shapes, which in turn corresponds to a diversity of flavors and aromas. These sensory qualities are tightly linked to oil glands in the citrus skin. The oil glands are also key to understanding fruit development, and the essential...

High-density genomic characterization of native Croatian sheep breeds

Ivana Drzaic, Ino Curik, Boris Lukic, Mario Shihabi, Meng-Hua Li, Juha Kantanen, Salvatore Mastrangelo, Elena Ciani, Johannes A. Lenstra & Vlatka Cubric-Curik
A recent comprehensive genomic analysis based on 50K SNP profiles has shown that the regional Balkan sheep populations have considerable genetic overlap but are distinctly different from surrounding breeds. All eight Croatian sheep breeds were represented by a small number of individuals per breed. Here, we genotyped 220 individuals representing the native Croatian sheep breeds (Istrian Sheep, Krk Island Sheep, Cres Island Sheep, Rab Island Sheep, Lika Pramenka, Pag Island Sheep, Dalmatian Pramenka, Dubrovnik Sheep)...

Deepwater Systems Reloaded: Advances on our understanding on submarine lobe deposits

Yvonne T. Spychala , David M. Hodgson , Joris T. Eggenhuisen , Stephen Flint , Christopher Stevenson , Mike Tilston , Ian A. Kane , Amadine Prelat & Florian Pohl
Submarine lobes are high aspect ratio sand-rich deposits that are fed by turbidity currents and debris flows via channels in deep-marine settings. As a major component of submarine fans, they represent 1) an important archive of palaeo-environmental change, 2) sinks for organic carbon and pollutants, and 3) are also of economic interest. Classic models describe lobes as purely depositional tabular sheets that thin and fine from an apex. Over the last decade, outcrop studies, numerical...

sj-docx-1-cll-10.1177_09636897221124485 – Supplemental material for Identification of Immune Infiltration and Effective Immune Biomarkers in Acute Lung Injury by Bioinformatics Analysis

Dandan Ling, Xiang Zhang, Jiamin Wu, Qianyun Xu, Zhiyong He & Jun Zhang
Supplemental material, sj-docx-1-cll-10.1177_09636897221124485 for Identification of Immune Infiltration and Effective Immune Biomarkers in Acute Lung Injury by Bioinformatics Analysis by Dandan Ling, Xiang Zhang, Jiamin Wu, Qianyun Xu, Zhiyong He and Jun Zhang in Cell Transplantation

sj-docx-1-cll-10.1177_09636897221124485 – Supplemental material for Identification of Immune Infiltration and Effective Immune Biomarkers in Acute Lung Injury by Bioinformatics Analysis

Dandan Ling, Xiang Zhang, Jiamin Wu, Qianyun Xu, Zhiyong He & Jun Zhang
Supplemental material, sj-docx-1-cll-10.1177_09636897221124485 for Identification of Immune Infiltration and Effective Immune Biomarkers in Acute Lung Injury by Bioinformatics Analysis by Dandan Ling, Xiang Zhang, Jiamin Wu, Qianyun Xu, Zhiyong He and Jun Zhang in Cell Transplantation

Additional file 1 of Randomized controlled trials in de-implementation research: a systematic scoping review

Aleksi J. Raudasoja, Petra Falkenbach, Robin W. M. Vernooij, Jussi M. J. Mustonen, Arnav Agarwal, Yoshitaka Aoki, Marco H. Blanker, Rufus Cartwright, Herney A. Garcia-Perdomo, Tuomas P. Kilpeläinen, Olli Lainiala, Tiina Lamberg, Olli P. O. Nevalainen, Eero Raittio, Patrick O. Richard, Philippe D. Violette, Jorma Komulainen, Raija Sipilä & Kari A. O. Tikkinen
Additional file 1: eFigure1. Flow diagram. eFigure 2. Published studies per medical content area. eFigure 3. Risk of bias per question. eFigure 4. Risk of bias inside intervention categories. eFigure 5. Intervention components in single-component interventions. eMethods 1. Search strategies. eMethods 2. Risk of Bias Tool for RCTs of complex interventions. eMethods 3. Refined version of intervention taxonomy for de-implementation interventions. eMethods 4. Rationale for refined intervention taxonomy. eMethods 5. Rationale for outcome hierarchy of...

Additional file 2 of Randomized controlled trials in de-implementation research: a systematic scoping review

Aleksi J. Raudasoja, Petra Falkenbach, Robin W. M. Vernooij, Jussi M. J. Mustonen, Arnav Agarwal, Yoshitaka Aoki, Marco H. Blanker, Rufus Cartwright, Herney A. Garcia-Perdomo, Tuomas P. Kilpeläinen, Olli Lainiala, Tiina Lamberg, Olli P. O. Nevalainen, Eero Raittio, Patrick O. Richard, Philippe D. Violette, Jorma Komulainen, Raija Sipilä & Kari A. O. Tikkinen
Additional file 2. Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) Checklist.

Randomized controlled trials in de-implementation research: a systematic scoping review

Aleksi J. Raudasoja, Petra Falkenbach, Robin W. M. Vernooij, Jussi M. J. Mustonen, Arnav Agarwal, Yoshitaka Aoki, Marco H. Blanker, Rufus Cartwright, Herney A. Garcia-Perdomo, Tuomas P. Kilpeläinen, Olli Lainiala, Tiina Lamberg, Olli P. O. Nevalainen, Eero Raittio, Patrick O. Richard, Philippe D. Violette, Jorma Komulainen, Raija Sipilä & Kari A. O. Tikkinen
Abstract Background Healthcare costs are rising, and a substantial proportion of medical care is of little value. De-implementation of low-value practices is important for improving overall health outcomes and reducing costs. We aimed to identify and synthesize randomized controlled trials (RCTs) on de-implementation interventions and to provide guidance to improve future research. Methods MEDLINE and Scopus up to May 24, 2021, for individual and cluster RCTs comparing de-implementation interventions to usual care, another intervention, or...

Randomized controlled trials in de-implementation research: a systematic scoping review

Aleksi J. Raudasoja, Petra Falkenbach, Robin W. M. Vernooij, Jussi M. J. Mustonen, Arnav Agarwal, Yoshitaka Aoki, Marco H. Blanker, Rufus Cartwright, Herney A. Garcia-Perdomo, Tuomas P. Kilpeläinen, Olli Lainiala, Tiina Lamberg, Olli P. O. Nevalainen, Eero Raittio, Patrick O. Richard, Philippe D. Violette, Jorma Komulainen, Raija Sipilä & Kari A. O. Tikkinen
Abstract Background Healthcare costs are rising, and a substantial proportion of medical care is of little value. De-implementation of low-value practices is important for improving overall health outcomes and reducing costs. We aimed to identify and synthesize randomized controlled trials (RCTs) on de-implementation interventions and to provide guidance to improve future research. Methods MEDLINE and Scopus up to May 24, 2021, for individual and cluster RCTs comparing de-implementation interventions to usual care, another intervention, or...

Additional file 2 of Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

Tine De Coster, Heleen Masset, Olga Tšuiko, Maaike Catteeuw, Yan Zhao, Nicolas Dierckxsens, Ainhoa Larreategui Aparicio, Eftychia Dimitriadou, Sophie Debrock, Karen Peeraer, Marta de Ruijter-Villani, Katrien Smits, Ann Van Soom & Joris Robert Vermeesch
Additional file 2: Figure S2. Analysis of blastomeres following multipolar zygotic division. A) Interpretation of haplarithm plots. Overview of chromosome-wise haplarithm patterns for distinct genomic constitutions (i.e. biparental disomy, paternal monosomy and paternal meiotic/dispermic uniparental heterodisomy). Corresponding whole-genome errors (i.e. biparental diploid or androgenetic) are characterized by the manifestation of those patterns throughout the (majority of the) genome. Defined single-cell BAF values of the segmented P1, P2, M1 and M2, form haplotype blocks, demarcated by...

Additional file 8 of Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

Tine De Coster, Heleen Masset, Olga Tšuiko, Maaike Catteeuw, Yan Zhao, Nicolas Dierckxsens, Ainhoa Larreategui Aparicio, Eftychia Dimitriadou, Sophie Debrock, Karen Peeraer, Marta de Ruijter-Villani, Katrien Smits, Ann Van Soom & Joris Robert Vermeesch
Additional file 8: Figure S8. Anuclear blastomeres and fragments. A) Phylogenetic tree based on reassembled mitochondrial genomes of 11 anuclear blastomeres and two anuclear fragments, showing a common ancestor for sequenced blastomeres and fragments retrieved from the same embryo. One anuclear blastomere was not included. B) Box plots and median values of the number of raw reads per 10 Mb bin (y-axis) per chromosome (chr1 - chrX) and for the mitochondrial DNA (chrM) (x-axis) as...

Estimation of reinforced urn processes under left-truncation and right-censoring

Luis Antonio Souto Arias, Pasquale Cirillo & Cornelis W. Oosterlee
We propose a nonparametric estimator for bivariate left-truncated and right-censored (LTRC) observations that combines the Expectation-Maximization (EM) algorithm and the Reinforced Urn Process (RUP). The resulting Expectation-Reinforcement (ER) algorithm allows for the inclusion of experts' knowledge in the form of a prior distribution, thus belonging to the class of Bayesian models. This can be relevant in applications where the data is incomplete, due to biases in the sampling process, as in the case of left-truncation...

Functional niche constraints on carnivore assemblages (mammalia: carnivora) in the Americas: What facilitates coexistence through space and time?

Andrés Arias-Alzate, Felber J. Arroyave, Oscar Y. Romero Goyeneche, Rafael Hurtado Heredia, José F. Gonzalez-Maya, Joaquín Arroyo-Cabrales, A. Townsend Peterson & Enrique Martínez-Meyer
Aim: Mammalian carnivores are among the best studied groups in terms of evolutionary history. However, the effects of species interactions in shaping community assemblages remain poorly understood. We hypothesize that indirect interactions via ecological trait filtering play a key role in structuring carnivoran assemblages, mediate coexistence, and thus should show high functional diversity in space and time at continental scales. Location: Americas. Taxon: Mammalian carnivores (Mammalia: Carnivora). Methods: We followed a macroecological perspective via ecological...

Decoupled dust deposition and ocean productivity in the Antarctic Zone of the Southern Ocean over the past 1.5 million years

Michael E. Weber , Ian Bailey , Sidney R. Hemming , Yasmina M. Martos , Brendan T. Reilly , Thomas A. Ronge , Stefanie Brachfeld , Trevor Williams , Maureen Raymo , Simon T. Belt , Hendrik Vogel , Victoria Peck , Linda Armbrecht , Alix Cage , Fabricio G. Cardillo , Zhiheng Du , Gerson Fauth , Christopher J. Fogwill , Marga Garcia , Marlo Garnsworthy , Anna Glüder , Michelle Guitard , Marcus Gutjahr , Iván Hernández-Almeida , Frida S. Hoem … & Xufeng Zheng
Southern Ocean paleoceanography provides key insights into how iron fertilization and oceanic productivity developed through Pleistocene ice-ages and their role in influencing the carbon cycle. We report the first high-resolution record of dust deposition and ocean productivity for the Antarctic Zone, close to the main dust source, Patagonia. Our deep-ocean records cover the last 1.5 Ma, thus doubling that from Antarctic ice-cores. We find a ≥10-fold increase in dust deposition during glacials and a ≤5-fold...

OneGeochemistry: Enabling a coordinated online global network of multiple distributed geochemical repositories and databases

Kerstin Annette Lehnert , Lesley Wyborn , Dominik Hezel , Alexander Prent , Kirsten Elger , Geertje ter Maat , Marthe Klöcking & Jens Klump
Since the discipline of ‘geochemistry’ was first defined in 1838, geochemical data has been pervasively acquired and used in the Earth, environmental and planetary sciences and become fundamental for understanding past, present, and future processes in natural systems. Initially, geochemical data was published in hard-copy literature, but as analytical systems became computerised, major digital databases emerged (EarthChem, PetDB, OZCHEM and GEOROC) which revolutionised data access. They have proven the power of re-use of geochemical data...

GPS vertical time series of solid Earth deformation for the southern Antarctic Peninsula 2010-2020

Achraf Koulali, Pippa Whitehouse, Peter Clarke, Michiel van den Broeke, Grace Nield, Matt King, Michael Bentley, Bert Wouters & Terry Wilson
This dataset contains vertical GPS time series observed from selected sites in the southern Antarctic Peninsula. The dataset contains raw time series and time series corrected for the effect of elastic deformation - induced from the RACMO surface mass balance (SMB) model with a 5.5 km horizontal resolution (van Wessem et al. 2018). Hence there are two time series files for each of ten sites, presented as CSV files. There is a README file which...

Data from: Testosterone eliminates strategic prosocial behavior

Hana Kutlikova, Lei Zhang, Jack Van Honk & Claus Lamm
Humans are strategically more prosocial when their actions are being watched than when they act alone. Using a psychopharmacogenetic approach, we investigated the computational and endocrinological mechanisms of such audience-driven prosociality. 187 participants received either a single dose of testosterone or a placebo and performed a prosocial and self-oriented reinforcement learning task. Crucially, the task was performed either in private or when being watched. Rival theories of testosterone's role in status-seeking suggest that the hormone...

Thermo-compositional models of the West Gondwana cratons

Nils-Peter Finger , Mikhail K. Kaban , Magdala Tesauro , Walter D. Mooney & Maik Thomas
When Western Gondwana broke apart into the South American and African continents ca.120 Ma ago, some of its cratons were broken apart as well. Following the isopycnic hypothesis, their long-term stability and often neutral to positive buoyancy can be explained by the counteracting effects of cooling (density increase) and iron depletion (density decrease). To separate these effects, we created the presented models following an iterative integrated approach using mainly seismic and gravity data. In the...

Proximal to distal grain-size distribution of basin-floor lobes: A study from the Battfjellet Formation, Central Tertiary Basin, Svalbard

Yvonne T. Spychala , Thymen A.B. Ramaaker , Joris T. Eggenhuisen , Sten-Andreas Grundvåg , Florian Pohl & Sara Wroblewska
The grain-size distribution of sediment particles is an important aspect of the architecture of submarine fans and lobes. It governs depositional sand quality, and reflects distribution of particulate organic carbon and pollutants. Documenting the grain-size distribution of these deep-marine sedimentary bodies can also offer us an insight in the flows that deposited them. Submarine lobes are commonly assumed to linearly fine from an apex, meaning there should be a proportional relation between grain size and...

Additional file 1 of Randomized controlled trials in de-implementation research: a systematic scoping review

Aleksi J. Raudasoja, Petra Falkenbach, Robin W. M. Vernooij, Jussi M. J. Mustonen, Arnav Agarwal, Yoshitaka Aoki, Marco H. Blanker, Rufus Cartwright, Herney A. Garcia-Perdomo, Tuomas P. Kilpeläinen, Olli Lainiala, Tiina Lamberg, Olli P. O. Nevalainen, Eero Raittio, Patrick O. Richard, Philippe D. Violette, Jorma Komulainen, Raija Sipilä & Kari A. O. Tikkinen
Additional file 1: eFigure1. Flow diagram. eFigure 2. Published studies per medical content area. eFigure 3. Risk of bias per question. eFigure 4. Risk of bias inside intervention categories. eFigure 5. Intervention components in single-component interventions. eMethods 1. Search strategies. eMethods 2. Risk of Bias Tool for RCTs of complex interventions. eMethods 3. Refined version of intervention taxonomy for de-implementation interventions. eMethods 4. Rationale for refined intervention taxonomy. eMethods 5. Rationale for outcome hierarchy of...

Additional file 2 of Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

Tine De Coster, Heleen Masset, Olga Tšuiko, Maaike Catteeuw, Yan Zhao, Nicolas Dierckxsens, Ainhoa Larreategui Aparicio, Eftychia Dimitriadou, Sophie Debrock, Karen Peeraer, Marta de Ruijter-Villani, Katrien Smits, Ann Van Soom & Joris Robert Vermeesch
Additional file 2: Figure S2. Analysis of blastomeres following multipolar zygotic division. A) Interpretation of haplarithm plots. Overview of chromosome-wise haplarithm patterns for distinct genomic constitutions (i.e. biparental disomy, paternal monosomy and paternal meiotic/dispermic uniparental heterodisomy). Corresponding whole-genome errors (i.e. biparental diploid or androgenetic) are characterized by the manifestation of those patterns throughout the (majority of the) genome. Defined single-cell BAF values of the segmented P1, P2, M1 and M2, form haplotype blocks, demarcated by...

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  • Utrecht University
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  • Chinese Academy of Medical Sciences & Peking Union Medical College
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  • Jilin Agricultural University
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  • Ghent University
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  • Capital Medical University
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  • Qiqihar University
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