Additional file 4: Relationship between probability of identity (PID), probability of identity between siblings (PIDsib) and the number of genotyped SNP or microsatellite loci.

Additional file 5: Comparison of microsatellite- and SNP-based genetic variation.

Additional file 2: Summary statistics associated with nuclear genome sequencing, assembly and annotation.

Abstract Background Allegheny woodrats (Neotoma magister) are found in metapopulations distributed throughout the Interior Highlands and Appalachia. Historically these metapopulations persisted as relatively fluid networks, enabling gene flow between subpopulations and recolonization of formerly extirpated regions. However, over the past 45 years, the abundance of Allegheny woodrats has declined throughout the species’ range due to a combination of habitat destruction, declining hard mast availability, and roundworm parasitism. In an effort to initiate genetic rescue of...

Additional file 3: SNP genotypes of woodrats sampled in Indiana, New Jersey, Ohio and Pennsylvania. The spreadsheet labeled “Raw Data” includes the genotypes for 318 individuals genotyped at 134 SNP loci.

Additional file 3: SNP genotypes of woodrats sampled in Indiana, New Jersey, Ohio and Pennsylvania. The spreadsheet labeled “Raw Data” includes the genotypes for 318 individuals genotyped at 134 SNP loci.

Additional file 4: Relationship between probability of identity (PID), probability of identity between siblings (PIDsib) and the number of genotyped SNP or microsatellite loci.

While biological invasions have the potential for large negative impacts on local communities and ecological interactions, increasing evidence suggests that species once considered major problems can decline over time. Declines often appear driven by natural enemies, diseases, or evolutionary adaptations that selectively reduce populations of naturalized species and their impacts. Using permanent long-term monitoring locations, we document declines of Alliaria petiolata (garlic mustard) in eastern North America with distinct local and regional dynamics as a...

Background: Allegheny woodrats (Neotoma magister) are found in metapopulations distributed throughout the Interior Highlands and Appalachia. Historically these metapopulations persisted as relatively fluid networks, enabling gene flow between subpopulations and recolonization of formerly extirpated regions. However, over the past 45 years, Allegheny woodrat populations have experienced population declines throughout their range due to a combination of habitat destruction, declining hard mast availability, and roundworm parasitism. In an effort to initiate genetic rescue of a small,...

Additional file 2: Summary statistics associated with nuclear genome sequencing, assembly and annotation.

Additional file 1: Microsatellite genotypes of woodrats sampled in 2009, 2011 and 2012 in the Palisades, NJ. The spreadsheets labeled “Raw Data” and “data GenAlEx” include the genotypes for twenty-eight individuals genotyped at 11 microsatellite loci. These individuals had relatively low genetic variability, as indicated by number of alleles (spreadsheets AFP and AGL), observed heterozygosity and expected heterozygosity (spreadsheet HFP).

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Additional file 1: Microsatellite genotypes of woodrats sampled in 2009, 2011 and 2012 in the Palisades, NJ. The spreadsheets labeled “Raw Data” and “data GenAlEx” include the genotypes for twenty-eight individuals genotyped at 11 microsatellite loci. These individuals had relatively low genetic variability, as indicated by number of alleles (spreadsheets AFP and AGL), observed heterozygosity and expected heterozygosity (spreadsheet HFP).

Additional file 5: Comparison of microsatellite- and SNP-based genetic variation.

Abstract Background Allegheny woodrats (Neotoma magister) are found in metapopulations distributed throughout the Interior Highlands and Appalachia. Historically these metapopulations persisted as relatively fluid networks, enabling gene flow between subpopulations and recolonization of formerly extirpated regions. However, over the past 45 years, the abundance of Allegheny woodrats has declined throughout the species’ range due to a combination of habitat destruction, declining hard mast availability, and roundworm parasitism. In an effort to initiate genetic rescue of...