10 Works

Data from: Logging-induced changes in habitat network connectivity shape behavioral interactions in the wolf-caribou-moose system

Nicolas Courbin, Daniel Fortin, Christian Dussault & R. Courtois
Habitat connectivity influences the distribution dynamics of animals. Connectivity can therefore shape trophic interactions, but little empirical evidence is available, especially for large mammals. In forest ecosystems, logging alters functional connectivity among habitat patches, and such activities can affect the spatial game between large herbivores and their predators. We used graph theory to evaluate how harvesting-induced changes in habitat connectivity influence patch choice and residency time of GPS-collared caribou (Rangifer tarandus caribou) and moose (Alces...

Data from: The availability of research data declines rapidly with article age

Timothy H. Vines, Arianne Y. K. Albert, Rose L. Andrew, Florence Débarre, Dan G. Bock, Michelle T. Franklin, Kimberly J. Gilbert, Jean-Sébastien Moore, Sébastien Renaut & Diana J. Rennison
Policies ensuring that research data are available on public archives are increasingly being implemented at the government, funding agency, and journal level. These policies are predicated on the idea that authors are poor stewards of their data, particularly over the long term, and indeed many studies have found that authors are often unable or unwilling to share their data. However, there are no systematic estimates of how the availability of research data changes with time...

Data from: Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish

Marie Filteau, Scott A. Pavey, Jérôme St-Cyr & Louis Bernatchez
BACKGROUND: A functional understanding of processes involved in adaptive divergence is one of the awaiting opportunities afforded by high throughput transcriptomic technologies. Functional analysis of co-expressed genes has succeeded in the biomedical field in identifying key drivers of disease pathways. However, in ecology and evolutionary biology, functional interpretation of transcriptomic data is still limited. RESULTS: Here we used Weighted Gene Co-Expression Network Analysis (WGCNA) to identify modules of co-expressed genes in muscle and brain tissue...

Data from: Spatial heterogeneity in the strength of plant-herbivore interactions under predation risk: the tale of bison foraging in wolf country

Léa Harvey & Daniel Fortin
Spatial heterogeneity in the strength of trophic interactions is a fundamental property of food web spatial dynamics. The feeding effort of herbivores should reflect adaptive decisions that only become rewarding when foraging gains exceed 1) the metabolic costs, 2) the missed opportunity costs of not foraging elsewhere, and 3) the foraging costs of anti-predator behaviour. Two aspects of these costs remain largely unexplored: the link between the strength of plant-herbivore interactions and the spatial scale...

Data from: The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

Pierre-Alexandre Gagnaire, Scott A. Pavey, Eric Normandeau & Louis Bernatchez
During speciation-with-gene-flow, effective migration varies across the genome as a function of several factors, including proximity of selected loci, recombination rate, strength of selection, and number of selected loci. Genome scans may provide better empirical understanding of the genome-wide patterns of genetic differentiation, especially if the variance due to the previously mentioned factors is partitioned. In North American lake whitefish (Coregonus clupeaformis), glacial lineages that diverged in allopatry about 60,000 years ago and came into...

Data from: Nonparallelism in MHC IIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next generation sequencing

Scott A. Pavey, Maelle Sevellec, Éric Normandeau, Fabien C. Lamaze, Pierre-Alexandre Gagnaire, Marie Filteau, François Olivier Hébert, Halim Maaroufi, Louis Bernatchez & William Adam
Major histocompatibility (MHC) immune system genes may evolve in response to pathogens in the environment. Because they also may affect mate choice, they are candidates for having great importance in ecological speciation. Here, we use next-generation sequencing to test the general hypothesis of parallelism in patterns of MHCIIβ diversity and bacterial infections among five dwarf and normal whitefish sympatric pairs. A second objective was to assess the functional relationships between specific MHCIIβ alleles and pathogens...

Data from: Inbreeding depression in intra-provenance crosses driven by founder relatedness in white spruce

Trevor K. Doerksen, Jean Bousquet & Jean Beaulieu
Genetic means for height growth differed between intra- and inter-provenance crosses, which we hypothesized was due partly to unidentified relatedness among intra-provenance base parents resulting in mild inbreeding and inbreeding depression among their offspring. A dense array of 5,844 single nucleotide polymorphisms was used to directly construct a genomic relationship matrix (G) that had four elements ranging from 0.17 to 0.24, between five intra-provenance base parents. Adjusting the numerator relationship matrix for this relatedness among...

Data from: The diet of Myotis lucifugus across Canada: assessing foraging quality and diet variability

Elizabeth L. Clare, William O. C. Symondson, Hugh Broders, François Fabianek, Erin E. Frazer, Alistair MacKenzie, Andrew Boughen, Rachel Hamilton, Craig K. R. Willis, Felix Martinez-Nuñez, Allyson K. Menzies, Kaleigh J. O. Norquay, Mark Brigham, Joseph Poissant, Jody Rintoul, Robert M. R. Barclay, Jesika P. Reimer & Erin E. Fraser
Variation in prey resources influences the diet and behaviour of predators. When prey become limiting, predators may travel farther to find preferred food or adjust to existing local resources. When predators are habitat limited, local resource abundance impacts foraging success. We analysed the diet of Myotis lucifugus (little brown bats) from Nova Scotia (eastern Canada) to the Northwest Territories (north-western Canada). This distribution includes extremes of season length and temperature and encompasses colonies on rural...

Data from: Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation

Vincent Bourret, Mélanie Dionne, Matthew Peter Kent, Sigbjørn Lien, Louis Bernatchez & Bourret Vincent
A growing number of studies are examining the factors driving historical and contemporary evolution in wild populations. By combining surveys of genomic variation with a comprehensive assessment of environmental parameters, such studies can increase our understanding of the genomic and geographical extent of local adaptation in wild populations. We utilized a large-scale landscape genomics approach to examine adaptive and neutral differentiation across 54 North American populations of Atlantic salmon representing seven previously defined genetically distinct...

Data from: Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis)

François Olivier Hébert, Sébastien Renaut & Louis Bernatchez
Latest technological developments in evolutionary biology bring new challenges in documenting the intricate genetic architecture of species in the process of divergence. Sympatric populations of lake whitefish represent one of the key systems to investigate this issue. Despite the value of random genotype-by-sequencing methods and decreasing cost of sequencing technologies, it remains challenging to investigate variation in coding regions, especially in the case of recently duplicated genomes as in salmonids, as this greatly complicates whole...

Registration Year

  • 2013
    10

Resource Types

  • Dataset
    10

Affiliations

  • Université Laval
    10
  • University of British Columbia
    2
  • Saint Mary's University
    1
  • Queen Mary University of London
    1
  • University of Winnipeg
    1
  • Western University
    1
  • University of Regina
    1
  • Cardiff University
    1
  • University of Exeter
    1
  • University of Calgary
    1