245 Works

Data from: Community-wide changes in inter-taxonomic temporal co-occurrence resulting from phenological shifts

Fangyuan Hua, Junhua Hu, Yang Liu, Xingli Giam, Tien Ming Lee, Hao Luo, Jia Wu, Qiaoyi Liang, Jian Zhao, Xiaoyan Long, Hong Pang, Biao Wang, Wei Liang, Zhengwang Zhang, Xuejie Gao & Jiang Zhu
Global climate change is known to affect the assembly of ecological communities by altering species’ spatial distribution patterns, but little is known about how climate change may affect community assembly by changing species’ temporal co-occurrence patterns, which is highly likely given the widely observed phenological shifts associated with climate change. Here we analyzed a 29-year phenological data set comprising community-level information on the timing and span of temporal occurrence in 11 seasonally occurring animal taxon...

Corticosteroid prevents COVID-19 progression within its therapeutic window: a multicentre, proof-of-concept, observational study

Yang Li, Xian Zhou, Tao Li, Shiji Chan, Yiqi Yu, Jing-Wen Ai, Haocheng Zhang, Feng Sun, Qiran Zhang, Lei Zhu, Lingyun Shao, Bin Xu & Wenhong Zhang
Critically ill patients with coronavirus diseases 2019 (COVID-19) are of grave concern. Those patients usually underwent a stage of excessive inflammation before developing acute respiratory distress syndrome. In this study, we test the hypothesis that short-term, low-to-moderate-dose corticosteroids would benefit patients when used in the early phase of excessive inflammation, namely, the therapeutic window. Among a Shanghai cohort and a validation cohort, we enrolled COVID-19 patients showing marked radiographic progression. Short-term, low-to-moderate-dose corticosteroids were considered...

Corticosteroid prevents COVID-19 progression within its therapeutic window: a multicenter, proof-of-concept, observational study.

Yang Li, Xian Zhou, Tao Li, Shiji Chan, Yiqi Yu, Jing-Wen Ai, Haocheng Zhang, Feng Sun, Qiran Zhang, Lei Zhu, Lingyun Shao, Bin Xu & Wenhong Zhang
Background: Critically ill patients with COVID-19 are of grave concern. Those patients usually underwent a stage of excessive inflammation before developing acute respiratory distress syndrome. In this study, we test the hypothesis that short-term, low-to-moderate-dose corticosteroids would benefit patients when used in the early phase of excessive inflammation namely, the therapeutic window. Methods: Among a Shanghai cohort and a validation cohort, we enrolled COVID-19 patients showing marked radiographic progression. Short-term, low-to-moderate-dose corticosteroids were considered for...

Data from: Community-level economics spectrum of fine-roots driven by nutrient limitations in subalpine forests

Fanglan Li, Hui Hu, M. Luke McCormack, Defeng Feng, Xin Liu & Weikai Bao
1. Fine-root traits show remarkable variation with plant community structure and environmental shifts, but there is limited understanding of how trait covariation that exists among fine-root traits shifts among different communities, especially in forests. We explored links among the fine-root traits of forest communities to determine whether community root traits shift predictably according to an economics framework along environmental gradients. 2. Measurements of root morphology, nitrogen, phosphorus and carbon concentrations, and measures of standing root...

RR3DD: an RNA global structure-based RNA three-dimensional structural classification database

Xu Hong, Jinfang Zheng, Juan Xie, Xiaoxue Tong, Xudong Liu, Qi Song, Sen Liu & Shiyong Liu
The three-dimensional (3D) structure of RNA usually plays an important role in the recognition with RNA-binding protein. Along with the discovering of RNAs, several RNA databases are developed to study the functions of RNA based on sequence, secondary structure, local 3D structural motif and global structure. Based on RNA function and structure, different RNAs are classified and stored in SCOR and DARTS, respectively. The classification of RNA structures is useful in RNA structure prediction and...

RETRACTED ARTICLE: KIAA1429 promotes osteosarcoma progression by promoting stem cell properties and is regulated by miR-143-3p

Qicai Han, Jie Yang, Hao Yang, Chao Li, Juan Li & Yuan Cao
We, the Editors and Publisher of the journal Cell Cycle, have retracted the following article: Qicai Han, Jie Yang, Hao Yang, Chao Li, Juan Li & Yuan Cao (2020) KIAA1429 promotes osteosarcoma progression by promoting stem cell properties and is regulated by miR-143-3p, Cell Cycle, 19:10, 1172-1185, DOI: 10.1080/15384101.2020.1749465 Since publication, concerns have been raised about similarity of the data in another published article: Yang J, Han Q, Li C, Yang H, Chen X, Wang...

Classification and expression analysis of cucumber (Cucumis sativus L.) callose synthase (CalS) family genes and localization of CsCalS4, a protein involved in pollen development

Hongyun Wang, Shoujun Cao, Tao Li, Lili Zhang, Jiangang Yao, Xiubo Xia & Ruiqing Zhang
Callose plays an important role in plant development and response to multiple biotic and abiotic stresses. Callose synthase (CalS; EC 2.4.1.34), the main enzyme in callose synthesis, has been studied in a number of crops but not in cucumber (Cucumis sativus L.). In this study, 10 genes encoding putative callose synthase were identified and classified into four clades. Expression levels of the 10 CsCalS genes, which varied considerably, were detected in most analyzed organs. Transcription...

ATG7-mediated autophagy facilitates embryonic stem cell exit from naive pluripotency and marks commitment to differentiation

Jilong Zhou, Hainan He, Jing-Jing Zhang, Xin Liu, Wang Yao, Chengyu Li, Tian Xu, Shu-Yuan Yin, Dan-Ya Wu, Cheng-Li Dou, Qiao Li, Jiani Xiang, Wen-Jing Xiong, Li-Yan Wang, Jun-Ming Tang, Zhouyiyuan Xue, Xia Zhang & Yi-Liang Miao
Macroautophagy/autophagy is a conserved cellular mechanism to degrade unneeded cytoplasmic proteins and organelles to recycle their components, and it is critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. Whereas autophagy is essential for early development of embryos, no information exists regarding its functions during the transition from naive-to-primed pluripotency. Here, by using an in vitro transition model of ESCs to epiblast-like cells (EpiLCs), we find that dynamic changes in ATG7-dependent autophagy are...

Eukaryotic translation initiation factor 3 subunit B could serve as a potential prognostic predictor for breast cancer

Shaoran Song, Jie Liu, Miao Zhang, Xiaoqian Gao, Wei Sun, Peijun Liu, Yaochun Wang & Juan Li
The EIF3 gene family is essential in controlling translation initiation during the cell cycle. The significance of the EIF3 subunits as prognostic markers and therapeutic targets in breast cancer is not yet clear. We analyzed the expression of EIF3 subunits in breast cancer on the GEPIA and Oncomine databases and compared their expression in breast cancer and normal tissues using BRCA data downloaded from TCGA. Then we performed clinical survival analysis on the Kaplan–Meier Plotter...

Eukaryotic translation initiation factor 3 subunit B could serve as a potential prognostic predictor for breast cancer

Shaoran Song, Jie Liu, Miao Zhang, Xiaoqian Gao, Wei Sun, Peijun Liu, Yaochun Wang & Juan Li
The EIF3 gene family is essential in controlling translation initiation during the cell cycle. The significance of the EIF3 subunits as prognostic markers and therapeutic targets in breast cancer is not yet clear. We analyzed the expression of EIF3 subunits in breast cancer on the GEPIA and Oncomine databases and compared their expression in breast cancer and normal tissues using BRCA data downloaded from TCGA. Then we performed clinical survival analysis on the Kaplan–Meier Plotter...

Protective effect and mechanism of low P50 haemoglobin oxygen carrier on isolated rat heart

Wentao Zhou, Shen Li, Shasha Hao, Honghui Zhang, Tao Li, Wanjing Li, Jiaxin Liu, Hong Wang & Chengmin Yang
The protection of the isolated heart is very important in heart transplantation surgery, meanwhile, the ischaemia/reperfusion (I/R) of the isolated heart is the main cause of its damage. A timely supply of oxygen can significantly improve the prevention of myocardial ischaemia, however, the cardioprotective solution does not have an oxygen supply function. Haemoglobin Based on Oxygen Carriers (HBOCs) is a kind of nano-oxygen drug, which can effectively and timely supply oxygen to hypoxic organs and...

Heterogeneous evolution of sex chromosomes in the torrent frog genus Amolops

Jun Ping, Yun Xia, Jianghong Ran & Xiaomao Zeng
In sharp contrast with birds and mammals, sex chromosomes have been described as homomorphic in cold-blooded vertebrates. This sex-chromosome homomorphy has been suggested to result from high turnovers when they are often observed across deeply diverged clades. However, little is known about the tempo and mode of sex chromosome evolution among most closely related species. Here, we examine patterns of sex chromosome evolution among nine species of the torrent frog genus Amolops. Through the analysis...

Key frames assisted hybrid encoding for photorealistic compressive video sensing

Honghao Huang, Jiajie Teng, Yu Liang, Chengyang Hu, Minghua Chen, Sigang Yang & Hongwei Chen
Snapshot compressive imaging (SCI) encodes high-speed scene video into a snapshot measurement and then computationally makes reconstructions, allowing for efficient high-dimensional data acquisition. Numerous algorithms, ranging from regularization-based optimization and deep learning, are being investigated to improve reconstruction quality, but they are still limited by the ill-posed and information-deficient nature of the standard SCI paradigm. To overcome these drawbacks, we propose a new key frames assisted hybrid encoding paradigm for compressive video sensing, termed KH-CVS,...

Lensless holographic microscope with a time and memory-saving algorithm for large-volume imaging of organoids

Weiqiang Zheng, Juan Wang, Yunhong Zhou, Qiang Zeng, Cheng Zhang, Li Liu, Hui Yu & YUTING YANG
Organoids, the 3D culture systems derived from stem cells, are promising models for human organs. But organoid study requires large-volume imaging with single cell resolution, which is beyond the spatial bandwidth limit of conventional optical microscopy. Herein, we propose a lensless holographic microscope empowered with a time and memory-saving algorithm. It solves the tradeoff between the imaging field of view, resolution and processing speed, and provides a practical tools for organoids’ study. We first build...

Additional file 1 of Realized niche shift of an invasive widow spider: drivers and impacts of human activities

Zhenhua Luo, Monica A. Mowery, Xinlan Cheng, Qing Yang, Junhua Hu & Maydianne C. B. Andrade
Additional file 1. Table S1: Occurrence records of Latrodectus hasselti included in this study.

Validity and reliability of a semi-quantitative food frequency questionnaire in groups at high risk for cardiovascular diseases

Ni Yan, Nan Li, Wanlu Liu, Xiaoxia Li, Xiuying Liu, Pengju Zhang, Can Liu, Juan Li, Jiangwei Qiu, Yuhong Zhang & Yi Zhao
Abstract Background Diet is a modifiable risk factor for cardiovascular diseases (CVD), but there is still a lack of tools to assess dietary intakes of this high-risk population in Ningxia, China. Objective We aim to evaluate the validity and reliability of the semi-quantitative food frequency questionnaire (SFFQ) in the groups in Ningxia using a 24-hour dietary recall method. Method Two hundred five participants were included in the analysis. The two FFQs were 6 months apart,...

Genetic, biological and epidemiological study on a cluster of H9N2 avian influenza virus infections among chickens, a pet cat, and humans at a backyard farm in Guangxi, China

Jing Yang, Jianhua Yan, Cheng Zhang, Shanqin Li, Manhua Yuan, Chunge Zhang, Chenguang Shen, Yang Yang, Lifeng Fu, Guanlong Xu, Weifeng Shi, Zhenghai Ma, Ting Rong Luo & Yuhai Bi
During an investigation in October 2018, two people with diarrhoea, mild abdominal pain, and mild arthralgia symptoms in Guangxi, China, were identified as infected by H9N2 avian influenza virus (AIV). Four H9N2 AIVs were isolated from one of two patients, a pet cat, and a dead chicken (two respective isolates from its lung and kidney tissues) bred by the patients at a backyard farm. Epidemiological investigation indicated that the newly bought chicken died first, and...

Anomalous π modes by floquet engineering in optical lattices with long-range coupling

Shengjie Wu, Wange Song, Zhiyuan Lin, Chen Chen, Shining Zhu & Tao Li
Photonic Floquet topological insulators provide a powerful tool to manipulate the optical fields, which have been extensively studied with only nearest-neighbor coupling. Here, we demonstrate that nontrivial Floquet topological phase and photonic π modes are brought from long-range coupling in a one-dimensional periodically driven optical lattice. Interestingly, the long-range coupling is found to give rise to new Floquet π modes that do not exist in the traditional Floquet lattices. We interpret the underlying physics by...

What do 5G networks, Bill Gates, Agenda 21, and QAnon have in common? Sources, distribution, and characteristics

Itai Himelboim, Porismita Borah, Danielle Ka Lai Lee, Jeonghyun (Janice) Lee, Yan Su, Anastasia Vishnevskaya & Xizhu Xiao
Mounting uncertainties regarding the coronavirus disease (COVID-19) pandemic and the popularity of social media created fertile grounds for conspiracy theories to flourish, leading to a global “infodemic.” We examine information sources used to support five popular COVID-19-related conspiracy theories on Twitter to identify (1) their primary building blocks, (2) similarities and dissimilarities across COVID-19 conspiracy theories, and (3) the relationship between type of message content and content distribution. Findings show that statements of belief and...

What do 5G networks, Bill Gates, Agenda 21, and QAnon have in common? Sources, distribution, and characteristics

Itai Himelboim, Porismita Borah, Danielle Ka Lai Lee, Jeonghyun (Janice) Lee, Yan Su, Anastasia Vishnevskaya & Xizhu Xiao
Mounting uncertainties regarding the coronavirus disease (COVID-19) pandemic and the popularity of social media created fertile grounds for conspiracy theories to flourish, leading to a global “infodemic.” We examine information sources used to support five popular COVID-19-related conspiracy theories on Twitter to identify (1) their primary building blocks, (2) similarities and dissimilarities across COVID-19 conspiracy theories, and (3) the relationship between type of message content and content distribution. Findings show that statements of belief and...

Additional file 1 of AGI grade-guided chaiqin chengqi decoction treatment for predicted moderately severe and severe acute pancreatitis (CAP trial): study protocol of a randomised, double-blind, placebo-controlled, parallel-group, pragmatic clinical trial

Zhiyao Chen, Xiaonan Yang, Jia Guo, Tao Jin, Ziqi Lin, Ping Zhu, Jing Li, Ling Li, Xin Sun, Dan Du, Kun Jiang, Yanqiu He, Fei Cai, Lan Li, Cheng Hu, Qingyuan Tan, Wei Huang, Lihui Deng & Qing Xia
Additional file 1. SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents.

Additional file 1 of Metabolic profiling and pharmacokinetic studies of Baihu-Guizhi decoction in rats by UFLC-Q-TOF–MS/MS and UHPLC-Q-TRAP-MS/MS

Yan He, Zhenkun Zhou, Weijie Li, Yanqiong Zhang, Ruoyao Shi, Tao Li, Linlin Jin, Hongliang Yao, Na Lin & Hao Wu
Additional file 1: Figure S1. The chemical structure and corresponding mass spectrum of absorbed components in vivo.

Additional file 7 of Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species

Huanhuan Xie, Lei Zhang, Cheng Zhang, Hong Chang, Zhenxiang Xi & Xiaoting Xu
Additional file 7: Table S4. Accession numbers of the CPGs used in the phylogenetic analysis.

Additional file 2 of Metabolic profiling and pharmacokinetic studies of Baihu-Guizhi decoction in rats by UFLC-Q-TOF–MS/MS and UHPLC-Q-TRAP-MS/MS

Yan He, Zhenkun Zhou, Weijie Li, Yanqiong Zhang, Ruoyao Shi, Tao Li, Linlin Jin, Hongliang Yao, Na Lin & Hao Wu
Additional file 2: Figure S2. The chromatograms of mixed standards and serum sample after BHGZD gavage.

Additional file 4 of Metabolic profiling and pharmacokinetic studies of Baihu-Guizhi decoction in rats by UFLC-Q-TOF–MS/MS and UHPLC-Q-TRAP-MS/MS

Yan He, Zhenkun Zhou, Weijie Li, Yanqiong Zhang, Ruoyao Shi, Tao Li, Linlin Jin, Hongliang Yao, Na Lin & Hao Wu
Additional file 4: Figure S4. Graphical abstract.

Registration Year

  • 2023
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    5
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Resource Types

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Affiliations

  • Chengdu Institute of Biology
    245
  • Zhejiang University
    183
  • Sun Yat-sen University
    170
  • Shanghai Jiao Tong University
    149
  • Sichuan University
    146
  • First Affiliated Hospital of Anhui Medical University
    146
  • Central South University
    129
  • Fudan University
    128
  • Army Medical University
    127
  • West China Hospital of Sichuan University
    121