420 Works

AGI grade-guided chaiqin chengqi decoction treatment for predicted moderately severe and severe acute pancreatitis (CAP trial): study protocol of a randomised, double-blind, placebo-controlled, parallel-group, pragmatic clinical trial

Zhiyao Chen, Xiaonan Yang, Jia Guo, Tao Jin, Ziqi Lin, Ping Zhu, Jing Li, Ling Li, Xin Sun, Dan Du, Kun Jiang, Yanqiu He, Fei Cai, Lan Li, Cheng Hu, Qingyuan Tan, Wei Huang, Lihui Deng & Qing Xia
Abstract Background Acute pancreatitis (AP) is a common digestive disease with increased incidence globally but without internationally licenced pharmacological therapy. Moderately severe and severe acute pancreatitis (MSAP/SAP) contributes predominately for its morbidities and mortality and has been managed in West China Hospital for decades using the traditional Chinese medicinal formula chaiqin chengqi decoction (CQCQD). The current study tests whether the early administration of CQCQD will result in improved clinical outcomes in predicted MSAP/SAP patients. Methods...

Additional file 2 of AGI grade-guided chaiqin chengqi decoction treatment for predicted moderately severe and severe acute pancreatitis (CAP trial): study protocol of a randomised, double-blind, placebo-controlled, parallel-group, pragmatic clinical trial

Zhiyao Chen, Xiaonan Yang, Jia Guo, Tao Jin, Ziqi Lin, Ping Zhu, Jing Li, Ling Li, Xin Sun, Dan Du, Kun Jiang, Yanqiu He, Fei Cai, Lan Li, Cheng Hu, Qingyuan Tan, Wei Huang, Lihui Deng & Qing Xia
Additional file 2. PRECIS-2 scores of chaiqin chengqi decoction for predicted moderately severe and severe acute pancreatitis (CAP trial) domains.

Additional file 1 of Clinical application of artificial neural network (ANN) modeling to predict BRCA1/2 germline deleterious variants in Chinese bilateral primary breast cancer patients

Yan Li, Lili Chen, Jinxing Lv, Xiaobin Chen, Bangwei Zeng, Minyan Chen, Wenhui Guo, Yuxiang Lin, Liuwen Yu, Jialin Hou, Jing Li, Peng Zhou, Wenzhe Zhang, Shengmei Li, Xuan Jin, Weifeng Cai, Kun Zhang, Yeyuan Huang, Chuan Wang & Fangmeng Fu
Supplementary Material 1

Clinical application of artificial neural network (ANN) modeling to predict BRCA1/2 germline deleterious variants in Chinese bilateral primary breast cancer patients

Yan Li, Lili Chen, Jinxing Lv, Xiaobin Chen, Bangwei Zeng, Minyan Chen, Wenhui Guo, Yuxiang Lin, Liuwen Yu, Jialin Hou, Jing Li, Peng Zhou, Wenzhe Zhang, Shengmei Li, Xuan Jin, Weifeng Cai, Kun Zhang, Yeyuan Huang, Chuan Wang & Fangmeng Fu
Abstract Background Bilateral breast cancer (BBC), as well as ovarian cancer, are significantly associated with germline deleterious variants in BRCA1/2, while BRCA1/2 germline deleterious variants carriers can exquisitely benefit from poly (ADP-ribose) polymerase (PARP) inhibitors. However, formal genetic testing could not be carried out for all patients due to extensive use of healthcare resources, which in turn results in high medical costs. To date, existing BRCA1/2 deleterious variants prediction models have been developed in women...

Clinical application of artificial neural network (ANN) modeling to predict BRCA1/2 germline deleterious variants in Chinese bilateral primary breast cancer patients

Yan Li, Lili Chen, Jinxing Lv, Xiaobin Chen, Bangwei Zeng, Minyan Chen, Wenhui Guo, Yuxiang Lin, Liuwen Yu, Jialin Hou, Jing Li, Peng Zhou, Wenzhe Zhang, Shengmei Li, Xuan Jin, Weifeng Cai, Kun Zhang, Yeyuan Huang, Chuan Wang & Fangmeng Fu
Abstract Background Bilateral breast cancer (BBC), as well as ovarian cancer, are significantly associated with germline deleterious variants in BRCA1/2, while BRCA1/2 germline deleterious variants carriers can exquisitely benefit from poly (ADP-ribose) polymerase (PARP) inhibitors. However, formal genetic testing could not be carried out for all patients due to extensive use of healthcare resources, which in turn results in high medical costs. To date, existing BRCA1/2 deleterious variants prediction models have been developed in women...

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

Development and validation of an LC-MS/MS method for pharmacokinetic study of lobetyolin in rats

Haitao Tian, Pan Zhao, Jing Li, Zhipeng Deng, Gaobin Pu & Hong Wang
Abstract A simple and selective liquid chromatography tandem with mass spectrometry (LC-MS/ MS) method for quantification of lobetyolin in rat plasma was developed and validated. Chromatographic separation was achieved on a Thermo ODS C18 reversed-phase column using 0.1% aqueous formic acid-methanol (50:50, v/v) in an isocratic elution mode at a flow rate of 0.4 mL.min-1. LC/MS performance was done in a positive ion ESI mode and the MS/MS transitions were monitored at m/z 419.3 [M+Na]+...

Biodose Tools: An R shiny Application for Biological Dosimetry

Alfredo Hernández, David Endesfelder, Jochen Einbeck, Pedro Puig, Mohamed Amine Benadjaoud, Manuel Higueras, Elizabeth Ainsbury, Gaëtan Gruel, Ursula Oestreicher, Leonardo Barrios & Joan Francesc Barquinero
Introduction In the event of a radiological accident or incident, the aim of biological dosimetry is to convert the yield of a specific biomarker of exposure to ionizing radiation into an absorbed dose. Since the 1980s, various tools have been used to deal with the statistical procedures needed for biological dosimetry, and in general those who made several calculations for different biomarkers were based on closed source software. Here we present a new open source...

Biodose Tools: an R shiny application for biological dosimetry

Alfredo Hernández, David Endesfelder, Jochen Einbeck, Pedro Puig, Mohamed Amine Benadjaoud, Manuel Higueras, Elizabeth Ainsbury, Gaëtan Gruel, Ursula Oestreicher, Leonardo Barrios & Joan Francesc Barquinero
In the event of a radiological accident or incident, the aim of biological dosimetry is to convert the yield of a specific biomarker of exposure to ionizing radiation into an absorbed dose. Since the 1980s, various tools have been used to deal with the statistical procedures needed for biological dosimetry, and in general those who made several calculations for different biomarkers were based on closed source software. Here we present a new open source program,...

Evolution of optical vortices in gradient media and curved spaces

Yuhang Yin, Qilin Duan, Jing Li, Chengwei Qiu & Huanyang Chen
Light propagation in gradient media and curved spaces induce intriguing phenomena, such as focusing and self-imaging, thus deriving a wide range of applications. However, these systems are limited to excitations without orbital angular momentum, which may obliterate unforeseen results. Here, we demonstrate the reconstructions (or called imaging to some extent) of optical vortices in two dimensional (2D) gradient media and three-dimensional (3D) curved spaces. We present the evolution of optical vortices in two types of...

Evolution of optical vortices in gradient media and curved spaces

Yuhang Yin, Qilin Duan, Jing Li, Chengwei Qiu & Huanyang Chen
Light propagation in gradient media and curved spaces induce intriguing phenomena, such as focusing and self-imaging, thus deriving a wide range of applications. However, these systems are limited to excitations without orbital angular momentum, which may obliterate unforeseen results. Here, we demonstrate the reconstructions (or called imaging to some extent) of optical vortices in two dimensional (2D) gradient media and three-dimensional (3D) curved spaces. We present the evolution of optical vortices in two types of...

Supplementary document for Nanowire-in-Bowl-shaped Piezoelectric Cavity Structure for SERS Directional Detection of Nanoplastics less than 50 nm - 6231470.pdf

Enze Lv, Junkun Wang, Jing Li, Xiaofei Zhao, Yu Jing, shicai xu, Zhen Li, yuan man, Mei xue & JiHua Xu
Supplementary material

Supplementary document for Nanowire-in-Bowl-shaped Piezoelectric Cavity Structure for SERS Directional Detection of Nanoplastics less than 50 nm - 6231470.pdf

Enze Lv, Junkun Wang, Jing Li, Xiaofei Zhao, Yu Jing, shicai xu, Zhen Li, yuan man, Mei xue & JiHua Xu
Supplementary material

sj-xlsx-2-cep-10.1177_03331024221146317 - Supplemental material for Genome-wide DNA methylation analysis in an antimigraine-treated preclinical model of cortical spreading depolarization

Marta Vila-Pueyo, Ester Cuenca-León, Ana C. Queirós, Marta Kulis, Cèlia Sintas, Bru Cormand, José Ignacio Martín-Subero, Patricia Pozo-Rosich, Noèlia Fernàndez-Castillo & Alfons Macaya
Supplemental material, sj-xlsx-2-cep-10.1177_03331024221146317 for Genome-wide DNA methylation analysis in an antimigraine-treated preclinical model of cortical spreading depolarization by Marta Vila-Pueyo, Ester Cuenca-León, Ana C. Queirós, Marta Kulis, Cèlia Sintas, Bru Cormand, José Ignacio Martín-Subero, Patricia Pozo-Rosich, Noèlia Fernàndez-Castillo, Alfons Macaya in Cephalalgia

Vari-focal liquid microlens array using electrically responsive fluid actuated by ring array patterned electrode

Miao Xu, Yating Liu, Senhao Li, Jing Li, Lyudi Zhang & Hongbo Lu
A transparent fluid dibutyl adipate (DBA) is suitable for fabricating the adaptive lens due to its unique deformation under a direct current (DC) electric field. In this report, a DBA liquid microlens array (LMA) with tunable focal length is demonstrated. A hydrophobic layer deposited in the ring-array patterns on the electrode induced the formation of the DBA liquid microdroplets array self-assembly. The electronegative DBA liquid tends to move to the anode at a DC voltage....

Development and validation of a practical machine learning model to predict sepsis after liver transplantation

Chaojin Chen, Bingcheng Chen, Jing Yang, Xiaoyue Li, Xiaorong Peng, Yawei Feng, Rongchang Guo, Fengyuan Zou, Shaoli Zhou & Ziqing Hei
Postoperative sepsis is one of the main causes of mortality after liver transplantation (LT). Our study aimed to develop and validate a predictive model for postoperative sepsis within 7 d in LT recipients using machine learning (ML) technology. Data of 786 patients received LT from January 2015 to January 2020 was retrospectively extracted from the big data platform of Third Affiliated Hospital of Sun Yat-sen University. Seven ML models were developed to predict postoperative sepsis....

Machine Learning Radiomics Model for External and Internal Respiratory Motion Correlation Prediction in Lung Tumor

Xiangyu Zhang, Xinyu Song, Guangjun Li, Lian Duan, Guangyu Wang, Guyu Dai, Ying Song, Jing Li & Sen Bai
Objectives: The complexity and specificity of lung tumor motion render it necessary to determine the external and internal correlation individually before applying indirect tumor tracking. However, the correlation cannot be determined from patient respiratory and tumor clinical characteristics before treatment. The purpose of this study is to present a machine learning model for an external/internal correlation prediction that is based on computed tomography (CT) radiomic features. Methods: 4-dimensional computed tomography (4DCT) images of 67 patients...

Understanding Multidirectional Climate Change Impacts on Local Livelihoods through the Lens of Local Ecological Knowledge: A Study in Western Amazonia

Mariana de Oliveira Estevo, André Braga Junqueira, Victoria Reyes-García & João Vitor Campos-Silva
Climate-related changes taking place in Amazonia substantially impact social-ecological systems, affecting local livelihoods strongly reliant on natural resources. Here, we investigate climate change impacts on different livelihood activities in western Amazonia, through the lens of local ecological knowledge. We conducted semi-structured interviews and surveys with ∼400 residents from 24 communities spread across a ∼600 km stretch of the Juruá River. Residents reported a vast set of changes, many referring to changes in the atmospheric system...

Additional file 1 of Facile approach for surfactant-free synthesis of Au@ginsenoside Rh2 nanoparticles and researches on anticancer activity

Hua Yao, Xupeng Mu, Zhenhong Wei, Xiuying Li, Liya Wu, Yongri Jin, Xuwen Li, Jing Li & Jinlan Jiang
Additional file 1: Characterization of Au@ginsenoside Rh2 NPs and results of cell uptake and cell proliferation.

Additional file 1 of Facile approach for surfactant-free synthesis of Au@ginsenoside Rh2 nanoparticles and researches on anticancer activity

Hua Yao, Xupeng Mu, Zhenhong Wei, Xiuying Li, Liya Wu, Yongri Jin, Xuwen Li, Jing Li & Jinlan Jiang
Additional file 1: Characterization of Au@ginsenoside Rh2 NPs and results of cell uptake and cell proliferation.

Additional file 1 of The novel inflammatory biomarker GlycA and triglyceride-rich lipoproteins are associated with the presence of subclinical myocardial dysfunction in subjects with type 1 diabetes mellitus

Carlos Puig-Jové, Josep Julve, Esmeralda Castelblanco, M Teresa Julián, Núria Amigó, Henrik U Andersen, Tarunveer S Ahluwalia, Peter Rossing, Dídac Mauricio, Magnus T Jensen & Núria Alonso
Supplementary Material 1: Supplementary Fig. 1: Comparison of the distribution of the predicted probabilities showing the classification performance of the presence of MCD between two different models, being the x-axis the predicted probabilities for both classes and the y-axis the count of observations. A: Model 1 includes classical risk variables (age, sex, eGFR, NTproBNP, BMI, diabetes duration and systolic blood pressure >140mmHg). B: Model 2 includes classical risk variables and the NMR-assessed biomarkers. The inclusion...

Phenoxychromone and 4-hydroxyisoflavans from the roots of Glycyrrhiza uralensis

Zulfiqar Ali, Mohammed Hawwal, Bharathi Avula, Amar G. Chittiboyina, Jing Li, Charles Wu & Ikhlas A. Khan
In an attempt to find species specific markers, a phenoxychromone (1) and eight isoflavonoids including six isoflavans (2-7) and two isoflavanones (8 and 9) were isolated from the root of Glycyrrhiza uralensis. Among the isolated phenolic compounds, glycyurelone (1), glycyurelvanins A and B (2 and 3) were found to be undescribed while others, (−)-vestitol (4), conferol A (5), glyasperin C (6), glyasperin D (7), (−)-licoisoflavanone (8), and (−)-3'-(γ,γ-dimethylallyl)kievitone (9) were previously reported. All compounds except...

Abietane diterpenoids with neuroprotective activities from Phlegmariurus carinatus

Yang Liu, Qiang Wang, Dong-Kun Zheng, De Zhang, Zhen Xie, Jia-Wei Hu, Xin-Hua Xie, Jing Li & Shu-Ping Jiang
Two new abietane diterpenoids, phlecarinatone A (1) and phlecarinatone B (2), along with two known analogues (3 and 4), were isolated from Phlegmariurus carinatus. The structures of 1 − 4 were unambiguously elucidated by comprehensive spectroscopic analyses. Abietane diterpenoids were isolated from the plant for the first time. All isolates were tested for their neuroprotective activities against H2O2-induced SH-SY5Y cells injury, and compound 2 showed moderate effect at the concentrations ranging from 5 ∼ 20...

SPRY4 promotes adipogenic differentiation of human mesenchymal stem cells through the MEK–ERK1/2 signaling pathway

Na Li, Yunfei Chen, Haiyan Wang, Jing Li & Robert Chunhua Zhao
Obesity is a chronic metabolic disorder characterized by the accumulation of excess fat in the body. Preventing and controlling obesity by inhibiting the adipogenic differentiation of mesenchymal stem cells (MSCs) and thereby avoiding the increase of white adipose tissue is safe and effective. Recent studies have demonstrated that Sprouty proteins (SPRYs) are involved in cell differentiation and related diseases. However, the role and mechanism of SPRY4 in MSC adipogenic differentiation remain to be explored. Here,...

ferrinetal_c&nmediatewarmingimpactonsoilinsects

Miquel Ferrín Guardiola, Josep Penuelas, Albert Gargallo-Garriga, Amaia Iribar, Ivan Janssens, Sara Marañón-Jiménez, Jérôme Murienne, Andreas Richter, Bjarni D. Sigurdsson & Guille Peguero
This study was conducted at the ForHot research site in Iceland (Sigurdsson et al., 2016) between August 2017 and June 2018 (64°0′N, 21°11′W). Soil type was a Brown Andosol (Arnalds, 2015). Mean annual temperature at the site was 5.1 °C. The coldest and warmest temperatures in the neighboring village of Eyrarbakki in 2016 were -12.3 °C and 21.6 °C, respectively. Average annual precipitation for the same year was 1153 mm (Icelandic Meteorological Office, 2016). The...

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