17 Works

Data from: Capturing neutral and adaptive genetic diversity for conservation in a highly structured tree species

Isabel Rodríguez-Quilón, Luis Santos-Del-Blanco, María Jesús Serra-Varela, Jarkko Koskela, Santiago César González-Martínez & Ricardo Alía
Preserving intraspecific genetic diversity is essential for long-term forest sustainability in a climate change scenario. Despite that, genetic information is largely neglected in conservation planning, and how conservation units should be defined is still heatedly debated. Here, we use maritime pine (Pinus pinaster Ait.), an outcrossing long lived tree with a highly fragmented distribution in the Mediterranean biodiversity hotspot, to prove the importance of accounting for genetic variation - at both neutral molecular markers and...

Data from: Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low-coverage draft genome, SNP and SSR markers

Sanna Olsson, Pedro Seoane Zonjic, Rocío Bautista, M. Gonzalo Claros, Santiago C. González-Martínez, Ivan Scotti, Caroline Scotti-Saintagne, Olivier J. Hardy & Myriam Heuertz
Population genetic studies in tropical plants are often challenging because of limited information on taxonomy, phylogenetic relationships and distribution ranges, scarce genomic information and logistic challenges in sampling. We describe a strategy to develop robust and widely applicable genetic markers based on a modest development of genomic resources in the ancient tropical tree species Symphonia globulifera L.f. (Clusiaceae), a keystone species in African and Neotropical rainforests. We provide the first low-coverage (11X) fragmented draft genome...

Data from: Grape moth density in Bordeaux vineyards depends on local habitat management despite effects of landscape heterogeneity on their biological control

Adrien Rusch, Lionel Delbac & Denis Thiéry
1. Biological control of crop pests is a major ecosystem service affected by several variables acting at multiple spatial scales. Among these variables, heterogeneity at the habitat and landscape scales are known key drivers of trophic interactions and pest density in agroecosystems. However, studies that try to disentangle their relative effects in perennial cropping systems are scarce and nothing is known about their impacts on insect pest density and pesticide applications. 2. We examined the...

Data from: Loss of connectivity among island-dwelling Peary caribou following sea ice decline

Deborah A. Jenkins, Nicolas Lecomte, James A. Schaefer, Steffen M. Olsen, Didier Swingedouw, Steeve D. Côté, Loïc Pellissier & Glenn Yannic
Global warming threatens to reduce population connectivity for terrestrial wildlife through significant and rapid changes to sea ice. Using genetic fingerprinting, we contrasted extant connectivity in island-dwelling Peary caribou in northern Canada with continental-migratory caribou. We next examined if sea-ice contractions in the last decades modulated population connectivity and explored the possible impact of future climate change on long-term connectivity among island caribou. We found a strong correlation between genetic and geodesic distances for both...

Data from: Genetic differentiation of the pine processionary moth at the southern edge of its range: contrasting patterns between mitochondrial and nuclear markers

Mhamed El Mokhefi, Carole Kerdelhué, Christian Burban, Andrea Battisti, Gahdab Chakali & Mauro Simonato
The pine processionary moth (Thaumetopoea pityocampa) is an important pest of coniferous forests at the southern edge of its range in Maghreb. Based on mitochondrial markers, a strong genetic differentiation was previously found in this species between western (pityocampa clade) and eastern Maghreb populations (ENA clade), with the contact zone between the clades located in Algeria. We focused on the moth range in Algeria, using both mitochondrial (a 648 bp fragment of the tRNA-cox2) and...

Data from: Avian pest control in vineyards is driven by interactions between bird functional diversity and landscape heterogeneity

Luc Barbaro, Adrien Rusch, Evalyne W. Muiruri, Bastien Gravellier, Denis Thiery & Bastien Castagneyrol
Insectivorous birds are increasingly recognized for the crucial pest control services they provide to agroecosystems. While both the foraging activity and functional diversity of birds are enhanced by multiscale habitat heterogeneity, little is known about how these relationships may influence avian top-down control of insects. Specifically, interactive effects of bird community structure and habitat heterogeneity on pest control across spatial scales have rarely been explored. We sampled bird communities and measured avian predation on plasticine...

Data from: Fungal disease incidence along tree diversity gradients depends on latitude in European forests

Diem Nguyen, Bastien Castagneyrol, Helge Bruelheide, Filippo Bussotti, Virginie Guyot, Hervé Jactel, Bogdan Jaroszewicz, Fernando Valladares, Jan Stenlid & Johanna Boberg
European forests host a diversity of tree species that are increasingly threatened by fungal pathogens, which may have cascading consequences for forest ecosystems and their functioning. Previous experimental studies suggest that foliar and root pathogen abundance and disease severity decrease with increasing tree species diversity, but evidences from natural forests are rare. Here, we tested whether foliar fungal disease incidence was negatively affected by tree species diversity in different forest types across Europe. We measured...

Data from: Allatostatin A signalling in Drosophila regulates feeding and sleep and is modulated by PDF

Jiangtian Chen, Wencke Reiher, Christiane Hermann-Luibl, Azza Sellami, Paola Cognigni, Shu Kondo, Charlotte Helfrich-Förster, Jan A. Veenstra & Christian Wegener
Feeding and sleep are fundamental behaviours with significant interconnections and cross-modulations. The circadian system and peptidergic signals are important components of this modulation, but still little is known about the mechanisms and networks by which they interact to regulate feeding and sleep. We show that specific thermogenetic activation of peptidergic Allatostatin A (AstA)-expressing PLP neurons and enteroendocrine cells reduces feeding and promotes sleep in the fruit fly Drosophila. The effects of AstA cell activation are...

Data from: Direct litter interference and indirect soil competitive effects of two contrasting phenotypes of a spiny legume shrub drive the forb composition of an oromediterranean community

Richard Michalet, Jean-Paul Maalouf & Patrick Al Hayek
Contrasting phenotypes of foundation species are known to differentially affect understorey plants. However, there is little knowledge on both the mechanisms of competition (resource competition versus interference) of stress-tolerant phenotypes and the importance of indirect interactions. In an oromediterranean community from Mount Lebanon we assessed the effects on understorey forbs of two contrasting phenotypes, a tight competitive from stressful habitat and a loose facilitative from more benign habitat. In a dry south and a wet...

Data from: Signatures of local adaptation in candidate genes of oaks (Quercus spp.) in respect to present and future climatic conditions

Christian Rellstab, Stefan Zoller, Lorenz Walthert, Isabelle Lesur, Andrea R. Pluess, René Graf, Catherine Bodénès, Christoph Sperisen, Antoine Kremer & Felix Gugerli
Testing how populations are locally adapted and predicting their response to their future environment is of key importance in view of climate change. Landscape genomics is a powerful approach to investigate genes and environmental factors involved in local adaptation. In a pooled amplicon sequencing approach of 94 genes in 71 populations, we tested if >3'500 single nucleotide polymorphisms (SNPs) in the three most common oak species in Switzerland (Quercus petraea, Q. pubescens, Q. robur) show...

Data from: Temporal change and determinants of maternal reproductive success in an expanding oak forest stand

Gabriel Gerzabek, Sylvie Oddou-Muratorio & Arndt Hampe
Global change is generating widespread local-scale expansions of tree populations. During demographic expansions, even small differences in individual reproductive success can generate large differences in the genetic composition of the resulting population. Colonizing tree populations almost invariably show highly skewed distributions of seed production, but the evolution of this reproductive skew during plant recruitment remains understudied. We examine how recruit mortality modifies initial patterns of acorn dispersal and maternal reproductive success in a recently established,...

Data from: Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew

Chloé E. L. Delmas, Frédéric Fabre, Jérôme Jolivet, Isabelle D. Mazet, Sylvie Richart Cervera, Laurent Delière & François Delmotte
An understanding of the evolution of pathogen quantitative traits in response to host selective pressures is essential for the development of durable management strategies for resistant crops. However, we still lack experimental data on the effects of partial host resistance on multiple phenotypic traits (aggressiveness) and evolutionary strategies in pathogens. We performed a cross-inoculation experiment with four grapevine hosts and 103 isolates of grapevine downy mildew (Plasmopara viticola) sampled from susceptible and partially resistant grapevine...

Data from: Causes and consequences of large clonal assemblies in a poplar hybrid zone

David Macaya-Sanz, Myriam Heuertz, Dorothea Lindtke, Giovanni G. Vendramin, Christian Lexer & Santiago C. Gonzalez-Martinez
Asexual reproduction is a common and fundamental mode of reproduction in plants. Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this study, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with Populus tremula, a species that grows in highly contrasted ecological...

Data from: New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance

Stéphane Decroocq, Amandine Cornille, David Tricon, Sevda Babayeva, Aurélie Chague, Jean-Philippe Eyquard, Raul Karychev, Svetlana Dolgikh, Tatiana Kostritsyna, Shuo Liu, Weisheng Liu, Wenjuan Geng, Kang Liao, Bayram Asma, Zeynal Akparov, Tatiana Giraud, Veronique Decroocq & Bayram M. Asma
Studying domesticated species and their wild relatives allows understanding of the mechanisms of population divergence and adaptation, and identifying valuable genetic resources. Apricot is an important fruit in the Northern hemisphere, where it is threatened by the Plum pox virus (PPV), causing the sharka disease. The histories of apricot domestication and of its resistance to sharka are however still poorly understood. We used 18 microsatellite markers to genotype a collection of 230 wild trees from...

Data from: Climatic drivers of leaf traits and genetic divergence in the tree Annona crassiflora: a broad spatial survey in the Brazilian savannas

Priciane C. Ribeiro, Matheus L. Souza, Larissa A. C. Muller, Vincenzo A. Ellis, Myriam Heuertz, José P. Lemos-Filho & Maria Bernadete Lovato
The Cerrado is the largest South American savanna and encompasses substantial species diversity and environmental variation. Nevertheless, little is known regarding the influence of the environment on population divergence of Cerrado species. Here, we searched for climatic drivers of genetic (nuclear microsatellites) and leaf trait divergence in Annona crassiflora, a widespread tree in the Cerrado. The sampling encompassed all phytogeographic provinces of the continuous area of the Cerrado and included 397 individuals belonging to 21...

Data from: Evidence for low-level hybridization between two allochronic populations of the pine processionary moth, Thaumetopoea pityocampa (Lepidoptera: Notodontidae)

Christian Burban, Mathieu Gautier, Raphael Leblois, Julie Landes, Helena Santos, Maria-Rosa Païva, Manuela Branco & Carole Kerdelhué
Divergence between populations sharing the same habitat can be initiated by different reproductive times, leading to allochronic differentiation. A spatially localized allochronic summer population (SP) of the pine processionary moth Thaumetopoea pityocampa, recently discovered in Portugal, occurs in sympatry with the local winter population (WP). We examined the level of genetic differentiation between the two populations and estimated the current gene flow within the spatial framework of their co-occurrence. Mitochondrial data indicated that the two...

Data from: A collection of European sweet cherry phenology data for assessing climate change

Bénédicte Wenden, José Antonio Campoy, Julien Lecourt, Gregorio López Ortega, Michael Blanke, Sanja Radičević, Elisabeth Schüller, Andreas Spornberger, Danilo Christen, Hugo Magein, Daniela Giovannini, Carlos Campillo, Svetoslav Malchev, José Miguel Peris, Mekjell Meland, Rolf Stehr, Gérard Charlot & José Quero-García
Professional and scientific networks built around the production of sweet cherry (Prunus avium L.) led to the collection of phenology data for a wide range of cultivars grown in experimental sites characterized by highly contrasted climatic conditions. We present a dataset of flowering and maturity dates, recorded each year for one tree when available, or the average of several trees for each cultivar, over a period of 37 years (1978 - 2015). Such dataset is...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of Bordeaux
  • French National Institute for Agricultural Research
  • Forest Research
  • Ecologie des Forêts Méditerranéennes
  • University of Padua
  • Azerbaijan National Academy of Sciences
  • Biologie du Fruit et Pathologie
  • University of Würzburg
  • Ecologie, Systématique et Evolution
  • Santé et Agroécologie du Vignoble