15 Works

Data from: The leaf economic and plant size spectra of European forest understory vegetation

Josep Padullés Cubino, Idoia Biurrun, Gianmaria Bonari, Tatiana Braslavskaya, Xavier Font, Ute Jandt, Florian Jansen, Valerijus Rašomavičius, Wolfgang Willner & Milan Chytrý
Forest understories play a vital role in ecosystem functioning and the provision of ecosystem services. However, the extent to which environmental conditions drive dominant ecological strategies in forest understories at the continental scale remains understudied. Here, we used ~29,500 forest vegetation plots sampled across Europe and classified into 25 forest types to explore the relative role of macroclimate, soil pH, and tree canopy cover in driving abundance-weighted patterns in the leaf economic spectrum (LES) and...

Dataset for estimation of the biotic and climatic niche breadths and geographic range size of beech (Fagus) species worldwide

Qiong Cai, Erik Welk, Chengjun Ji, Wenjing Fang, Francesco Maria Sabatini, Jianxiao Zhu, Jiangling Zhu, Zhiyao Tang, Fabio Attorre, Juan Antonio Campos, Andraž Čarni, Milan Chytrý, Süleyman Çoban, Jürgen Dengler, Jiri Dolezal, Richard Field, József Pál Frink, Hamid Gholizadeh, Adrian Indreica, Ute Jandt, Dirk Nikolaus Karger, Jonathan Lenoir, Robert K. Peet, Remigiusz Pielech, Michele De Sanctis … & Helge Bruelheide
This dataset could be used to test whether the commonly observed positive range size–niche breadth relationship, as posited by the “niche breadth hypothesis”, exists for Fagus, one of the most dominant and widespread broad‐leaved deciduous tree genera in temperate forests of the Northern Hemisphere. There are many ways to estimate niche breadth. Here, we estimated biotic and climatic niche breadths per species using plot‐based co‐occurrence data and climate data, respectively. The range sizes of the...

Interaction network for eleven Cucurbita pepo sites in Guatemala

Patricia Landaverde-González, Eunice Enriquez & Juan Nuñez Farfan
In recent years, evidence has been found that plant-pollinator interactions are altered by land-use and that genetic diversity also plays a role. However, how land-use and genetic diversity influence plant-pollinator interactions, particularly in the Neotropics, where many endemic plants exist is still an open question. Cucurbita pepo is a monoecious plant and traditional crop wide distributed, with high rates of molecular evolution, landraces associated with human cultural management and a history of coevolution with bees,...

Transcriptomic signatures of ageing vary in solitary and social forms of an orchid bee

Alice Séguret, Eckart Stolle, Fernando Fleites-Ayil, Javier Quezada-Euán, Klaus Hartfelder, Karen Meusemann, Mark Harrison, Antonella Soro & Robert Paxton
Eusocial insect queens are remarkable in their ability to maximise both fecundity and longevity, thus escaping the typical trade-off between these two traits. Several mechanisms have been proposed to underlie the remoulding of the trade-off, such as reshaping of the juvenile hormone pathway, or caste-specific susceptibility to oxidative stress. However, it remains a challenge to disentangle the molecular mechanisms underlying the remoulding of the trade-off in eusocial insects from caste-specific physiological attributes that have subsequently...

Pacific Introduced Flora (PacIFLora)

Michael Wohlwend, Dylan Craven, Patrick Weigelt, Hanno Seebens, Marten Winter, Holger Kreft, Wayne Dawson, Franz Essl, Mark Van Kleunen, Jan Pergl, Petr Pyšek, James Space, Philip Thomas & Tiffany Knight
The Pacific region has the highest density of naturalized plant species worldwide, which makes it an important area for research on the ecology, evolution and biogeography of biological invasions. While different data sources on naturalized plant species exist for the Pacific, there is no taxonomically and spatially harmonized database available for different subsets of species and islands. A comprehensive, accessible database containing the distribution of naturalized vascular plant species in the Pacific will enable new...

Data from: Comparative transcriptomic analysis of the mechanisms underpinning ageing and fecundity in social insects

Judith Korb, Karen Meusemann, Denise Aumer, Abel Bernadou, Daniel Elsner, Barbara Feldmeyer, Susanne Foitzik, Jürgen Heinze, Romain Libbrecht, Silu Lin, Megha Majoe, José Manuel Monroy Kuhn, Volker Nehring, Matteo A. Negroni, Robert J. Paxton, Alice C. Séguret, Marah Stoldt & Thomas Flatt
Exceptional longevity of social insect queens despite their lifelong high fecundity remains poorly understood in ageing biology. To gain insights into the mechanisms that might underlie ageing in social insects, we compared gene expression patterns between young and old castes (both queens and workers) across different lineages of social insects (two termite, two bee and two ant species). After global analyses, we paid particular attention to genes of the insulin/insulin-like growth factor 1 signalling (IIS)/target...

Data for: Winners and losers over 35 years of dragonfly and damselfly distributional change in Germany

Diana Bowler, David Eichenberg, Klaus-Jürgen Conze, Frank Suhling, Kathrin Baumann, Theodor Benken, André Bönsel, Torsten Bittner, Arne Drews, André Günther, Nick Isaac, Falk Petzold, Marcel Seyring, Torsten Spengler, Bernd Trockur, Christoph Willigalla, Helge Bruelheide, Florian Jansen & Aletta Bonn
Aim: Recent studies suggest insect declines in parts of Europe; however, the generality of these trends across different taxa and regions remains unclear. Standardized data are not available to assess large-scale, long-term changes for most insect groups but opportunistic citizen science data is widespread for some. Here, we took advantage of citizen science data to investigate distributional changes of Odonata. Location: Germany Methods: We compiled over 1 million occurrence records from different regional databases. We...

Data from: Landscape genetic analysis suggests stronger effects of past than current landscape structure on genetic patterns of Primula veris

Iris Reinula, Sabrina Träger, Ignacio M. Hernández-Agramonte, Aveliina Helm & Tsipe Aavik
This dataset contains genetic and landscape data of 19 Primula veris populations in Muhu and Saaremaa islands in Estonia. Genetic samples were collected in 2015 and 2016. Landscape data was extracted from maps dated 2016 and 2017 for current data and 1930s for historical data. Data is divided to node- and link-based data. Node-based data contains genetic diversity data of the P. veris populations and landscape data in circular buffers surrounding the populations. Link-based data...

Changes in community-weighted trait mean, functional diversity, soil chemical properties and temperature along an elevational gradient in Tenerife, Canary Islands

Amanda Ratier Backes, Larissa Frey, José Ramón Arévalo & Sylvia Haider
This dataset comprises community-weighted trait means and functional diversity of leaf traits, chemical soil properties and temperature recorded in roadside (disturbed) and interior (less disturbed) plots, along an elevational gradient of 2,300 m in Tenerife, Canary Islands. The leaf traits measured were specific leaf area (SLA), nitrogen, nitrogen to phosphorus ratio, leaf dry matter content (LDMC) and carbon to phosphorus ratio. The soil chemical properties measured were pH, nitrogen, nitrogen to phosphorus ratio, carbon to...

Floristic changes of xerothermic grasslands in Central Germany: A resurvey study based on quasi-permanent plots

Tim Meier, Isabell Hensen & Monika Partzsch
Biodiversity has declined in the dry and semi-dry grasslands of Central Germany over the past three decades, mainly as a result of ‘Global Change’, including changes to traditional land use prac-tices. Such processes have promoted the spread of grass species such as Bromus erectus, which has become increasingly dominant within xerothermic grasslands. The aim of the study was to investi-gate changes in the vegetation of such grasslands over the last two decades by comparing previous...

Fire alters diversity, composition and structure of dry tropical forests in the Eastern Ghats

Neeraja U. V., Rajendrakumar S., Saneesh C. S., Venkat Dyda & Tiffany M. Knight
Fire is known to have dramatic consequences on forest ecosystems around the world, and on the livelihoods of forest-dependent people. While the Eastern Ghats of India have high abundances of fire-prone dry tropical forests, little is known about how fire influences the diversity, composition and structure of these communities. Our study aims to fill this knowledge gap by examining the effects of presence and absence of recent fire on tropical dry forest communities within Kadiri...

Lepidoptera caterpillars barcodes in FASTA format

Ming-Qiang Wang, Chuan Yan, Arong Luo, Yi Li, Douglas Chesters, Hui-Jie Qiao, Jing-Ting Chen, Qing-Song Zhou, Keping Ma, Helge Bruelheide, Andreas Schuldt, Zhibin Zhang & Chao-Dong Zhu
The dataset contains COI barcodes of Lepidoptera caterpillars collected from a subtropical forest in Jiangxi, China.

Data from: A brief history and popularity of methods and tools used to estimate micro-evolutionary forces

Jonathan Kidner, Panagiotis Theodorou, Martin Husemann, Jan Engler & Martin Taubert
Population genetics is a field of research that predates the current generations of sequencing technology. Those approaches, that were established before massively parallel sequencing methods, have been adapted to these new marker systems (in some cases involving the development of new methods) that allow genome-wide estimates of the four major micro-evolutionary forces – mutation, gene flow, genetic drift and selection. Nevertheless, classic population genetic markers are still commonly used and a plethora of analysis methods...

The effect of niche filtering on plant species abundance in temperate grassland communities

Josep Padullés Cubino, Irena Axmanová, Zdeňka Lososová, Martin Večeřa, Ariel Bergamini, Helge Bruelheide, Jürgen Dengler, Ute Jandt, Florian Jansen, Ricarda Pätsch & Milan Chytrý
1. Niche filtering predicts that abundant species in communities have similar traits that are suitable for the environment. However, niche filtering can operate on distinct axes of trait variation in response to different ecological conditions. Here, we use a trait-based approach to infer niche filtering processes and (1) test if abundant and rare species in grassland communities are differently positioned along distinct axes of trait variation, (2) determine if these trait variation axes, as well...

A target enrichment probe set for resolving the flagellate land plant tree of life

Jesse W. Breinholt, Sarah B. Carey, George P. Tiley, E. Christine Davis, Lorena Endara, Stuart F. McDaniel, Leandro Neves, Emily B. Sessa, Matt Von Konrat, Susan Fawcett, Stefanie M. Ickert-Bond, Paulo H. Labiak, Juan Larraín, Marcus Lehnert, Lily R. Lewis, Nathalie S. Nagalingum, Nikisha Patel, Stefan A. Rensing, Weston Testo, Alejandra Vasco, Juan Carlos Villarreal, Evelyn Webb Williams, J. Gordon Burleigh, Sahut Chantanaorrapint, Leandro G. Neves … & Stefanie M. Ickert‐Bond
Premise of the Study: New sequencing technologies enable the possibility of generating large-scale molecular datasets for constructing the plant tree of life. We describe a new probe set for target enrichment sequencing to generate nuclear sequence data to build phylogenetic trees with any flagellate land plants, including hornworts, liverworts, mosses, lycophytes, ferns, and all gymnosperms. Methods and Results: We leveraged existing transcriptome and genome sequence data to design a set of 56,989 probes for target...

Registration Year

  • 2021

Resource Types

  • Dataset
  • Text


  • Martin Luther University Halle-Wittenberg
  • German Center for Integrative Biodiversity Research
  • Masaryk University
  • University of Vienna
  • University of Rostock
  • Helmholtz Centre for Environmental Research
  • University of the Basque Country
  • Senckenberg Biodiversity and Climate Research Centre
  • University of Göttingen
  • University of Freiburg