18 Works
Disease data of Triphragmium ulmariae on Filipendula ulmaria in the Skeppsvik archipelago
Jiasui Zhan, Lars Ericson, Jose González-Jiménez & Jeremy Burdon
The data set provides information on the incidence, prevalence and severity of a rust fungus Triphragmium ulmariae occurring in populations of the herbaceous perennial Filipendula ulmaria growing on a range of islands in the Skeppsvik archipelago, northern Sweden. These data, together with information on the size of individual host populations, has been used to monitor the impact of the disease on host population growth rates and temporal and spatial dynamics in a natural plant pathogen...
Symptoms and oxylipins in plasma before and after exposure to rooms in which individuals have both experienced and not experienced building-related symptoms – an exploratory study
Anna-Sara Claeson, Johan Sommar & Ingrid Liljelind
The aim of this study was to investigate if there are differences in symptom ratings and plasma concentrations of oxylipins as a measure of acute inflammation between individuals with building-related symptoms (BRS) and referents during exposure to rooms where people experienced BRS and rooms where they did not experience BRS. Medically examined individuals with BRS and healthy, age and sex matched referents working in the same building were exposed for 60 min. Ratings of symptoms...
BMI1 promotes steroidogenesis through maintaining redox homeostasis in mouse MLTC-1 and primary Leydig cells
Tingting Gao, Meng Lin, Binbin Shao, Qiao Zhou, Yufeng Wang, Xia Chen, Dan Zhao, Xiuliang Dai, Cong Shen, Hongbo Cheng, Shenmin Yang, Hong Li, Bo Zheng, Xingming Zhong, Jun Yu, Li Chen & Xiaoyan Huang
In males, aging is accompanied by decline in serum testosterone levels due to impairment of testicular Leydig cells. The polycomb protein BMI1 has recently been identified as an anti-aging factor. In our previous study, BMI1 null mice showed decreased serum testosterone and Leydig cell population, excessive oxidative stress and p16/p19 signaling activation. However, a cause-and-effect relationship between phenotypes and pathways was not investigated. Here, we used the rescue approach to study the role of oxidative...
Data associated with the manuscript \"On Lake Methane: Spatial Variability in Stable Carbon Isotopic Composition and the Potential Importance of Groundwater Input\"
Jonathan Schenk, Henrique Oliveira Sawakuchi, Anna Sieczko, Gustav Pajala, David Rudberg, Emelie Hagberg, Kjell Fors, Hjalmar Laudon, Jan Karlsson & David BastvikenData from: Bryophyte community assembly on young land uplift islands – dispersal and habitat filtering assessed using species traits
Andreas Karlsson Tiselius, Sofi Lundbäck, Niklas Lönnell, Roland Jansson & Mats Dynesius
Aim: To assess habitat filtering and dispersal limitation in spore plant community assembly using bryophytes on recently emerged land uplift islands as study system. Location: Gulf of Bothnia, northern Europe. Taxa: Bryophytes, including the spore plant phyla Bryophyta (mosses) and Marchantiophyta (liverworts). Methods: The species compositions of 20 coastal land uplift islands differing in age, area, connectivity, and habitat composition were recorded in the field. In addition, we compiled a list of the regional species...
Data from: Multidecadal changes in functional diversity lag behind the recovery of taxonomic diversity
Nathan Jay Baker, Francesca Pilotto, Phillip J. Haubrock, Burkhard Beudert & Peter Haase
1. While there has been increasing interest in how taxonomic diversity is changing over time, less is known about how long-term taxonomic changes may affect ecosystem functioning and resilience. Exploring long-term patterns of functional diversity can provide key insights into the capacity of a community to carry out ecological processes and the redundancy of species’ roles. 2. We focus on a protected freshwater system located in a national park in southeast Germany. We use a...
Vascular plant community surveys across different reindeer grazing regimes in the Fennoscandian tundra
Kate Gibson, Johan Oloffson, Arne Mooers & Melanie Monroe
This dataset contains data from the experiment described in "Gibson K., Olofsson, J. Mooers, A. Ø., & Monroe, M. J. (2021) Pulse grazing by reindeer (Rangifer tarandus) can increase the phylogenetic diversity of vascular plant communities in the Fennoscandian tundra. Ecology and Evolution. In press." The data is from a multi-year (2004-2007) quasi-experimental study in Northern Fennoscandia, which was designed to analyze the effect of reindeer grazing on vascular plant community diversity. Our study design...
Predator-prey overlap in three dimensions: cod benefit from capelin coming near the seafloor
Johanna Fall, Edda Johannesen, Göran Englund, Geir Odd Johansen & Øyvind Fiksen
Spatial overlap between predator and prey is a prerequisite for predation, but the degree of overlap is not necessarily proportional to prey consumption. This is because many of the behavioural processes that precede ingestion are non-linear and depend on local prey densities. In aquatic environments, predators and prey distribute not only across a surface, but also vertically in the water column, adding another dimension to the interaction. Integrating and simplifying behavioural processes across space and...
Symptoms and oxylipins in plasma before and after exposure to rooms in which individuals have both experienced and not experienced building-related symptoms – an exploratory study
Anna-Sara Claeson, Johan Sommar & Ingrid Liljelind
The aim of this study was to investigate if there are differences in symptom ratings and plasma concentrations of oxylipins as a measure of acute inflammation between individuals with building-related symptoms (BRS) and referents during exposure to rooms where people experienced BRS and rooms where they did not experience BRS. Medically examined individuals with BRS and healthy, age and sex matched referents working in the same building were exposed for 60 min. Ratings of symptoms...
Data from: Reindeer control over subarctic treeline alters soil fungal communities with potential consequences for soil carbon storage
Henni Ylänne, Rieke L. Madsen, Carles Castaño, Daniel B. Metcalfe & Karina E. Clemmensen
Here we present the data and R script from “Reindeer control over subarctic treeline alters soil fungal communities with potential consequences for soil carbon storage” by Henni Ylänne, Rieke L. Madsen, Carles Castaño, Daniel B. Metcalfe and Karina E. Clemmensen (Global Change Biology, 2021). In this study we reported the impacts of grazing regime and mountain birch vicinity on the abundance, diversity and community composition of the soil fungal community, and explored how the soil...
Decreased temperature increases the expression of a disordered bacterial late embryogenesis abundant (LEA) protein that enhances natural transformation
Terhi Maula, Nelli Vahvelainen, Helena Tossavainen, Tuuli Koivunen, Marja T. Pöllänen, Anders Johansson, Perttu Permi & Riikka Ihalin
Late embryogenesis abundant (LEA) proteins are important players in the management of responses to stressful conditions, such as drought, high salinity, and changes in temperature. Many LEA proteins do not have defined three-dimensional structures, so they are intrinsically disordered proteins (IDPs) and are often highly hydrophilic. Although LEA-like sequences have been identified in bacterial genomes, the functions of bacterial LEA proteins have been studied only recently. Sequence analysis of outer membrane interleukin receptor I (BilRI)...
Decreased temperature increases the expression of a disordered bacterial late embryogenesis abundant (LEA) protein that enhances natural transformation
Terhi Maula, Nelli Vahvelainen, Helena Tossavainen, Tuuli Koivunen, Marja T. Pöllänen, Anders Johansson, Perttu Permi & Riikka Ihalin
Late embryogenesis abundant (LEA) proteins are important players in the management of responses to stressful conditions, such as drought, high salinity, and changes in temperature. Many LEA proteins do not have defined three-dimensional structures, so they are intrinsically disordered proteins (IDPs) and are often highly hydrophilic. Although LEA-like sequences have been identified in bacterial genomes, the functions of bacterial LEA proteins have been studied only recently. Sequence analysis of outer membrane interleukin receptor I (BilRI)...
In-vitro digestion models: a critical review for human and fish and a protocol for in-vitro digestion in fish
Ricky Wang, Mahtab Mohammadi, Amir Mahboubi & Mohammad J. Taherzadeh
Digestive systems in human, animals, and fish are biological reactors and membranes to digest food and extract nutrients. Therefore, static and dynamic models of in-vitro digestion systems are developed to study e.g. novel food and feed before in-vivo studies. Such models are well developed for human, but not to the same extent for animals and fish. On the other hand, recent advances in aquaculture nutrition have created several potential fish meal replacements, and the assessment...
Large and small herbivores have strong effects on tundra vegetation in Scandinavia and Alaska
Elin Lindén, Laura Gough & Johan Olofsson
Large and small mammalian herbivores are present in most vegetated areas in the Arctic, and often have large impacts on plant community composition and ecosystem functioning. The relative importance of different herbivores and especially how their specific impact on the vegetation varies across the Arctic is however poorly understood. Here, we investigate how large and small herbivores influence vegetation density and plant community composition in four arctic vegetation types in Scandinavia and Alaska. We used...
In-vitro digestion models: a critical review for human and fish and a protocol for in-vitro digestion in fish
Ricky Wang, Mahtab Mohammadi, Amir Mahboubi & Mohammad J. Taherzadeh
Digestive systems in human, animals, and fish are biological reactors and membranes to digest food and extract nutrients. Therefore, static and dynamic models of in-vitro digestion systems are developed to study e.g. novel food and feed before in-vivo studies. Such models are well developed for human, but not to the same extent for animals and fish. On the other hand, recent advances in aquaculture nutrition have created several potential fish meal replacements, and the assessment...
Stoichiometric mismatch causes a warming-induced regime shift in experimental plankton communities
Sebastian Diehl, Stella A. Berger, Wojciech Uszko & Herwig Stibor
Many plant and algal communities respond to warming with shifts towards more carbon-rich species and growth forms, thus diluting essential elements in their biomass and intensifying the stoichiometric mismatch with herbivore nutrient requirements. The dataset is from a 95-day mesocosm experiment on the spring succession of an assembled plankton community in which we manipulated temperature (ambient vs. +3.6°C) and presence vs. absence of two types of grazers (ciliates and Daphnia) in a 2x2x2 factorial design...
Chinook salmon environmental data and allele frequency matrix
Yara Alshwairikh, Rebekah Horn, Travis Seaborn, Shawn Narum, Lisette Waits, William Swain, Steve Stephens-Cardenas, Jenny Olsson & Shayla Kroeze
Many species that undergo long breeding migrations, such as anadromous fishes, face highly heterogeneous environments along their migration corridors and at their spawning sites. These environmental challenges encountered at different life stages may act as strong selective pressures and drive local adaptation. However, the relative influence of environmental conditions along the migration corridor compared to the conditions at spawning sites on driving selection is still unknown. In this study, we performed genome-environment associations (GEA) to...
Camera trap data: Density dependence of daily activity in three ungulate species
J. Ignacio Ramirez
Daily activity in herbivores reflects a balance between finding food and safety. The safety-in-numbers theory predicts that living in higher population densities increases safety, which should affect this balance. High-density populations are thus expected to show a more even distribution of activity – i.e. spread – and higher activity levels across the day. We tested these predictions for three ungulate species; red deer (Cervus elaphus), roe deer (Capreolus capreolus) and wild boar (Sus scrofa). We...
Affiliations
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Umeå University18
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Swedish University of Agricultural Sciences3
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University of Borås2
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University of Jyväskylä2
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West China Hospital of Sichuan University1
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Zhejiang University1
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Guizhou Academy of Agricultural Sciences1
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Southwest Medical University1
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Jilin University1
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Air Force Medical University1