137 Works

Data from: Genetic mapping of two components of reproductive isolation between two sibling species of moths, Ostrinia nubilalis and O. scapulalis

Réjane Streiff, Brigitte Courtois, Serge Meusnier & Denis Bourguet
We report the quantitative trait loci (QTL) mapping of reproductive isolation traits between Ostrinia nubilalis (the European corn borer) and its sibling species O. scapulalis (the Adzuki bean borer), focusing on two traits: mating isolation (mi) and pheromone production (Pher). Four genetic maps were generated from two backcross families, with two maps (one chromosomal map and one linkage map) per backcross. We located 165–323 AFLP markers on these four maps, resulting in the identification of...

Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

Angelique D'Hont, France Denoeud, Jean-Marc Aury, Franc-Christophe Baurens, Françoise Carreel, Olivier Garsmeur, Benjamin Noel, Stéphanie Bocs, Gaëtan Droc, Mathieu Rouard, Corinne Da Silva, Jabbari Kamel, Céline Cardi, Julie Poulain, Marlène Souquet, Karine Labadie, Cyril Jourda, Juliette Lengellé, Marguerite Rodier-Goud, Adriana Alberti, Maria Bernard, Margot Correa, Saravanaraj Ayyampalayam, Michael R. McKain, Jim Leebens-Mack … & Patrick Wincker
Bananas (Musa spp.), including dessert and cooking types, are giant perennial monocotyledonous herbs of the order Zingiberales, a sister group to the well-studied Poales, which include cereals. Bananas are vital for food security in many tropical and subtropical countries and the most popular fruit in industrialized countries1. The Musa domestication process started some 7,000 years ago in Southeast Asia. It involved hybridizations between diverse species and subspecies, fostered by human migrations2, and selection of diploid...

Data from: On the origin of sweet potato (Ipomoea batatas (L.) Lam) genetic diversity in New Guinea, a secondary centre of diversity

Caroline Roullier, Rosa Kambouo, Janet Paofa, Doyle McKey & Vincent Lebot
New Guinea is considered the most important secondary centre of diversity for sweet potato (Ipomoea batatas). We analysed nuclear and chloroplast genetic diversity of 417 New Guinea sweet potato landraces, representing agro-morphological diversity collected throughout the island, and compared this diversity with that in tropical America. The molecular data reveal moderate diversity across all accessions analysed, lower than that found in tropical America. Nuclear data confirm previous results, suggesting that New Guinea landraces are principally...

Data from: Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination

Caroline Roullier, Laure Benoit, Doyle B. McKey & Vincent Lebot
The history of sweet potato in the Pacific has long been an enigma. Archaeological, linguistic and ethnobotanical data suggest that prehistoric human-mediated dispersal events contributed to the distribution in Oceania of this American domesticate. According to the “tripartite hypothesis”, sweet potato was introduced into Oceania from South America in pre-Columbian times, and was then later newly introduced, and diffused widely across the Pacific, by Europeans via two historically documented routes from Mexico and the Caribbean....

Data from: Distribution and population structure of the anther smut fungus Microbotryum silenes-acaulis parasitizing an arctic-alpine plant

Britta Bueker, Chris Eberlein, Pierre Gladieux, Angela Schaefer, Alodie Snirc, Dominic Bennett, Dominik Begerow, Michael Hood, Tatiana Giraud & Dominic J. Bennett
Cold-adapted organisms with current arctic-alpine distributions have persisted during the last glaciation in multiple ice-free refugia, leaving footprints in their population structure that contrast with temperate plants and animals. However, pathogens that live within hosts having arctic-alpine distributions have been little studied. Here, we therefore investigated the geographical range and population structure of a fungus parasitizing an arctic-alpine plant. A total of 1437 herbarium specimens of the plant Silene acaulis were examined, and the anther...

Data from: Modeling additive and non-additive effects in a hybrid population using genome-wide genotyping: prediction accuracy implications

Jean-Marc Bouvet, Garel Makouanzi, David Cros & Philippe Vigneron
Hybrids are broadly used in plant breeding and accurate estimation of variance components is crucial for optimizing genetic gain. Genome-wide information may be used to explore models designed to assess the extent of additive and non-additive variance and test their prediction accuracy for the genomic selection. Ten linear mixed models, involving pedigree- and marker-based relationship matrices among parents, were developed to estimate additive (A), dominance (D) and epistatic (AA, AD and DD) effects. Five complementary...

Data from: Fine nurse variations explain discrepancies in the stress-interaction relationship in alpine regions

Fabien Anthelme, Rosa I. Meneses, Nerida N. Huaman Valero, Paola Pozo & Olivier Dangles
Despite a large consensus on increasing facilitation among plants with increasing stress in alpine regions, a number of different outcomes of interaction have been observed, which impedes the generalisation of the ‘stress-gradient hypothesis’ (SGH). With the aim to reconcile the different viewpoints on the stress-interaction relationship in alpine environments we hypothesized that fine nurse variations within a single life form (cushion) may explain this pattern variability To test this hypothesis, we compared the magnitude of...

Data from: Root traits are related to plant water-use among rangeland Mediterranean species

Florian Fort, Florence Volaire, Lydie Guilioni, Karim Barkaoui, Marie-Laure Navas & Catherine Roumet
1. Understanding the water-use of plants is timely under increasing drought stress due to climate change. Despite the crucial role of roots in water uptake, relationships between water-use and root traits are seldom considered. 2. Combining a functional traits-based approach with a water balance model, we tested whether root functional traits are related to spatial and temporal water-use among 12 Mediterranean rangeland species grown in common garden monocultures. Soil water content was monitored for 10...

Data from: Life-history traits of Macrolophus pygmaeus with different prey foods

Serigne Sylla, Karamoko Diarra & Thierry Brévault
Macrolophus pygmaeus Rambur (Hemiptera: Miridae) is a generalist predatory mirid widely used in augmentative biological control of various insect pests in greenhouse tomato production in Europe, including the invasive tomato leafminer, Tuta absoluta (Meyrick) (Lepidoptera, Gelechiidae). However, its biocontrol efficacy often relies on the presence of alternative prey. The present study aimed at evaluating the effect of various prey foods (Ephestia kuehniella eggs, Bemisia tabaci nymphs, Tuta absoluta eggs and Macrosiphum euphorbiae nymphs) on some...

A meta-analysis of biological impacts of artificial light at night

Dirk Sanders, Enric Frago, Rachel Kehoe, Christophe Patterson & Kevin Gaston
This is a database of published studies, that measuered how the exposure to artificial light at night impacts the physiology, daily activity patterns and life-history traits. The data were collected using a systematic review with searches in Web of Science and Scopus. We also provide the R-code that was used to analyse the dataset with meta-analytic models in MCMCglmm.

Data from: Globally consistent impact of tropical cyclones on the structure of tropical and subtropical forests

Thomas Ibanez, Gunnar Keppel, Christophe Menkes, Thomas W. Gillespie, Matthieu Lengaigne, Morgan Mangeas, Gonzalo Rivas-Torres & Philippe Birnbaum
1. Tropical cyclones (TCs) are large-scale disturbances that regularly impact tropical forests. Although long-term impacts of TCs on forest structure have been proposed, a global test of the relationship between forest structure and TC frequency and intensity is lacking. We test on a pantropical scale whether TCs shape the structure of tropical and subtropical forests in the long-term. 2. We compiled forest structural features (stem density, basal area, mean canopy height and maximum tree size)...

Estimating heritability in honeybees: comparison of three major methods based on empirical and simulated datasets

Hélène Jourdan-Pineau, Gaëlle Antoine, Julien Galataud, Hélène Delatte, Christophe Simiand & Johanna Clémencet
The genetic contribution to phenotypic variation (namely the heritability) affects the response to selection. In honeybee, the haplodiploid sex determination does not allow the straightforward use of classical quantitative genetics methods to estimate heritability and genetic correlation. Nevertheless, specific methods have been developed for about 40 years. In particular, sibling analyses are frequently used with three main methods: an historical model using the average colony relatedness, a half-sibs/full-sibs model and the more recent animal model....

Data from: Asymmetric evolutionary responses to sex-specific selection in a hermaphrodite

Nicolás Bonel, Elsa Noël, Tim Janicke, Kevin Sartori, Elodie Chapuis, Adeline Ségard, Stefania Meconcelli, Benjamin Pélissié, Violette Sarda & Patrice David
Sex allocation theory predicts that simultaneous hermaphrodites evolve to an evolutionary stable resource allocation, whereby any increase in investment to male reproduction leads to a disproportionate cost on female reproduction and vice-versa. However, empirical evidence for sexual trade-offs in hermaphroditic animals is still limited. Here, we tested how male and female reproductive traits evolved under conditions of reduced selection on either male or female reproduction for 40 generations in a hermaphroditic snail. This selection favors...

A worldwide assessment of soil macroinvertebrate communities

Patrick Lavelle, Jerome Mathieu, Alister Spain, George Brown, Carlos Fragoso, Emmanuel Lapied, Adriana De Aquino, Isabelle Barois, Edmundo Barrios, Eleusa Barros, Juan Camilo Bedano, Eric Blanchart, Mark Caulfield, Yamileth Chagueza, Jun Dai, Thibaud Decaens, Anahi Domninquez, Yamileth Dominquez, Alex Feijoo, Patricia Folgaraiti, Steven Fonte, Norma Gorosito, Esperanza Huerta, Juan Jose Jimenez, Courtland Kelly … & Cesar Botero
Soil macroinvertebrate communities have been assessed worldwide using the standard ISO/TSBF sampling procedure. The Macrofauna database currently comprises 3694 sites distributed throughout 41 countries, from 55º S latitude to 57ºN, sea level to over 4000m in elevation, in total annual total rainfall regimes between 500 and >3000mm and 5 to 32ºC mean temperature. These communities are significantly influenced by climatic parameters, soil texture and vegetation cover. Abundance and diversity were highest in tropical rain forests...

Agroecosystem diversification with legumes or non-legumes improves differently soil fertility according to soil type

Marie Sauvadet, Jean Trap, Gaëlle Damour, Claude Plassard, Karel Van Den Meersche, Raphaël Achard, Clémentine Allinne, Patrice Autfray, Isabelle Bertrand, Eric Blanchart, Péninna Deberdt, Séguy Enock, Jean-Daniel Essobo, Grégoire Freschet, Mickaël Hedde, Elias De Melo Virginio Filho, Bodovololona Rabary, Miora Rakotoarivelo, Richard Randriamanantsoa, Béatrice Rhino, Aude Ripoche, Elisabeth Rosalie, Stéphane Saj, Thierry Becquer, Philippe Tixier … & Jean-Michel Harmand
Plant diversification through crop rotation or agroforestry is a promising way to improve sustainability of agroecosystems. Nonetheless, criteria to select the most suitable plant communities for agroecosystems diversification facing contrasting environmental constraints need to be refined. Here, we compared the impacts of 24 different plant communities on soil fertility across six tropical agroecosystems: either on highly weathered Ferralsols, with strong P limitation, or on partially weathered soils derived from volcanic material, with major N limitation....

Microbiome diversity and reproductive incompatibility induced by the prevalent endosymbiont Arsenophonus in two species of African cassava Bemisia tabaci whiteflies

Hajar El Hamss, Maruthi Gowda, Helene Delatte, Saptarshi Ghosh, M. N. Maruthi, Hélène Delatte & John Colvin
This dataset contains data from two-part experiments described in the paper: “El Hamss, H., Ghosh, S., M. N., M., Delatte, H., & Colvin, J. (2021). Microbiome diversity and reproductive incompatibility induced by the prevalent endosymbiont Arsenophonus in two species of African cassava Bemisia tabaci whiteflies. Ecology and Evolution, 00, 1–10. https://doi.org/10.1002/ece3.840”. The experiment investigates the effects of Arsenophonus on whitefly reproduction and microbiome diversity. In the first experiment (“crossing experiment”), the effect of Arsenophonus is...

Diffuser librement et immédiatement votre article scientifique ou son postprint

L’accès immédiat, libre et gratuit au contenu intégral de l’article scientifique est de plus en plus exigé par les gouvernements, les institutions et les bailleurs. Comment s’y conformer ? Cet accès peut concerner la version finale publiée par la revue ou la version postprint, c’est-à-dire la version acceptée du manuscrit de l’auteur. Pour chacune de ces deux versions, cette fiche fait le point sur les conditions établies par les revues, qu’elles soient hybrides ou en...

Proactive community case management decreased malaria prevalence in rural Madagascar: results from a cluster randomized trial

Rila Ratovoson, Andres Garchitorena, Daouda Kassie, Jemima A. Ravelonarivo, Voahangy Andrianaranjaka, Seheno Razanatsiorimalala, Avotra Razafimandimby, Fanjasoa Rakotomanana, Laurie Ohlstein, Reziky Mangahasimbola, Sandro A. N. Randrianirisoa, Jocelyn Razafindrakoto, Catherine M. Dentinger, John Williamson, Laurent Kapesa, Patrice Piola, Milijaona Randrianarivelojosia, Julie Thwing, Laura C. Steinhardt & Laurence Baril
Abstract Background Malaria remains a leading cause of morbidity and mortality worldwide, with progress in malaria control stalling in recent years. Proactive community case management (pro-CCM) has been shown to increase access to diagnosis and treatment and reduce malaria burden. However, lack of experimental evidence may hinder the wider adoption of this intervention. We conducted a cluster randomized community intervention trial to assess the efficacy of pro-CCM at decreasing malaria prevalence in rural endemic areas...

Additional file 1 of Genomic characterization of peste des petits ruminants vaccine seed “45G37/35-k”, Russia

Olivier Kwiatek, Geneviève Libeau, Samia Guendouz, Chloé Corbanini, Andrey Gogin, Andrey Lunitsin, Irina Sindryakova, Denis Koblasov & Arnaud Bataille
Additional file 1. Position and frequency of the 248 nucleotide differences separating the PPR vaccine strains Nigeria/75/1 (Nig75/1) and 45G37/35-k (FRCVM). Nucleotide positions corresponding to mutations associated to the attenuation of Nigeria/75/1 are in bold [14].

Genetic diversity and molecular epidemiology of Middle East Respiratory Syndrome Coronavirus in dromedaries in Ethiopia, 2017–2020

Ziqi Zhou, Abraham Ali, Elias Walelign, Getnet F. Demissie, Ihab El Masry, Takele Abayneh, Belayneh Getachew, Pavithra Krishnan, Daisy Y.M. Ng, Emma Gardner, Yilma Makonnen, Eve Miguel, Véronique Chevalier, Daniel K. Chu, Ray T. Y. So, Sophie Von Dobschuetz, Gezahegne Mamo, Leo L. M. Poon & Malik Peiris
Middle East respiratory syndrome coronavirus (MERS-CoV) is enzootic in dromedary camels and causes zoonotic infection and disease in humans. Although over 80% of the global population of infected dromedary camels are found in Africa, zoonotic disease had only been reported in the Arabia Peninsula and travel-associated disease has been reported elsewhere. In this study, genetic diversity and molecular epidemiology of MERS-CoV in dromedary camels in Ethiopia were investigated during 2017–2020. Of 1766 nasal swab samples...

Data from: Successional shifts in tree demographic strategies in wet and dry Neotropical forests

Nadja Rüger, Markus Schorn, Stephan Kambach, Robin L. Chazdon, Caroline E. Farrior, Jorge A. Meave, Rodrigo Muñoz, Michiel Van Breugel, Lucy Amissah, Frans Bongers, Dylan Craven, Bruno Hérault, Catarina C. Jakovac, Natalia Norden, Lourens Poorter, Masha T. Van Der Sande, Christian Wirth, Diego Delgado, Daisy H. Dent, Saara J. DeWalt, Juan M. Dupuy, Bryan Finegan, Jefferson S. Hall, José L. Hernández-Stefanoni & Omar R. Lopez
This dataset summarizes demographic rates, abundances and basal area across a succession of ~800 (sub) tropical tree species to explore generalities in demographic trade-offs and successional shifts in demographic strategies across four Neotropical forests that cover a large rainfall gradient. We used repeated forest inventory data from chronosequences in two wet (Costa Rica, Panama) and two dry forests (Yucatán, Oaxaca, both Mexico) to quantify demographic rates of ~800 tree species. For each forest, we explored...

Data from: Demographic processes shaping genetic variation of the solitarious phase of the desert locust

Marie-Pierre Chapuis, Christophe Plantamp, Laurence Blondin, Christine Pagès, Jean-Michel Vassal & Michel Lecoq
Between plagues, the solitarious desert locust (Schistocerca gregaria) is generally thought to exist as small populations, which are particularly prone to extinction events in arid regions of Africa and Asia. Given the high genetic structuring observed in one geographical area (the Eritrean coast) by former authors, a metapopulation dynamics model involving repeated extinction and colonization events was favored. In this study, we assessed the validity of a demographic scenario involving temporary populations of the solitarious...

Data from: Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation

Benoit Barrès, Jean Carlier, Marc Seguin, Catherine Fenouillet, Christian Cilas & Viginie Ravigné
Understanding the processes by which new diseases are introduced in previously healthy areas is of major interest in elaborating prevention and management policies as well as in understanding the dynamics of pathogen diversity at large spatial scale. In this study, we aimed to decipher the dispersal processes that have led to the emergence of the plant pathogenic fungus Microcyclus ulei, which is responsible for the South American Leaf Blight (SALB) that has affected rubber trees...

Data from: Spatial heterogeneity in landscape structure influences dispersal and genetic structure: empirical evidence from a grasshopper in an agricultural landscape

Bertrand Gauffre, Sophie Mallez, Marie-Pierre Chapuis, Leblois Raphael, Isabelle Litrico, Sabrina Delaunay, Isabelle Badenhausser & Raphael Leblois
Dispersal may be strongly influenced by landscape and habitat characteristics that could either enhance or restrict movements of organisms. Therefore, spatial heterogeneity in landscape structure could influence gene flow and the spatial structure of populations. In the past decades, agricultural intensification has led to the reduction in grassland surfaces, their fragmentation and intensification. As these changes are not homogeneously distributed in landscapes, they have resulted in spatial heterogeneity with generally less intensified hedged farmland areas...

Data from: Taxonomic and functional composition of arthropod assemblages across contrasting Amazonian forests

P. A. Greg Lamarre, Bruno Hérault, Paul V. A. Fine, Vincent Vedel, Roland Lupoli, Italo Mesones, Christopher Baraloto & Greg P. A. Lamarre
Arthropods represent most of global biodiversity, with the highest diversity found in tropical rainforests. Nevertheless, we have a very incomplete understanding of how tropical arthropod communities are assembled. We conducted a comprehensive mass-sampling of arthropod communities within three major habitat types of lowland Amazonian rainforest, including terra firme clay, white-sand, and seasonally-flooded forests in Peru and French Guiana. We examined how taxonomic and functional composition (at the family level) differed across these habitat types in...

Registration Year

  • 2023
  • 2022
  • 2021
  • 2020
  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014

Resource Types

  • Dataset
  • Text
  • Collection
  • Image
  • Other


  • Centre de Coopération Internationale en Recherche Agronomique pour le Développement
  • French National Centre for Scientific Research
  • University of Montpellier
  • University of Pavia
  • Southern Medical University
  • University of California, Irvine
  • Institut Pasteur de Madagascar
  • Institut Pasteur du Cambodge
  • Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle
  • French National Institute for Agricultural Research