103 Works

Data from: Wolbachia increases susceptibility to Plasmodium infection in a natural system

Flore Zélé, Antoine Nicot, Arnaud Berthomieu, Mylène Weill, Olivier Duron, Ana Rivero & F. Zele
Current views about the impact of Wolbachia on Plasmodium infections are almost entirely based on data regarding artificially transfected mosquitoes. This work has shown that Wolbachia reduces the intensity of Plasmodium infections in mosquitoes, raising the exciting possibility of using Wolbachia to control or limit the spread of malaria. Whether natural Wolbachia infections have the same parasite-inhibiting properties is not yet clear. Wolbachia–mosquito combinations with a long evolutionary history are, however, key for understanding what...

Data from: Population genetics of Manihot esculenta ssp. flabellifolia gives insight into past distribution of xeric vegetation in a postulated forest refugium area in northern Amazonia

Anne Duputié, Marc Delêtre, Jean-Jacques De Granville & Doyle McKey
The Guianas have often been proposed as a forest refugium; however, this view has received little testing. Studies of population genetics of forest taxa suggest that the central part of French Guiana remained forested, while the southern part (currently forested) may have harboured more open vegetation. Insights into the population structure of species restricted to non-forested habitats can help test this hypothesis. Using six microsatellite loci, we investigated the population genetics of French Guianan accessions...

Data from: Root community traits along a land use gradient: evidence of a community-level economics spectrum

Iván Prieto, Catherine Roumet, Remi Cardinael, Christian Dupraz, Christophe Jourdan, John H. Kim, Jean Luc Maeght, Zhun Mao, Alain Pierret, Noelia Portillo, Olivier Roupsard, Chantanousone Thammahacksa & Alexia Stokes
1. There is a fundamental trade-off between leaf traits associated with either resource acquisition or resource conservation. This gradient of trait variation, called the economics spectrum also applies to fine roots but whether it is consistent for coarse roots or at the plant community level remains untested. 2. We measured a set of morphological and chemical root traits at a community level (functional parameters; FP) in 20 plant communities located along land-use intensity gradients and...

Le delta du fleuve Sénégal : un atlas collaboratif

Marie-Christine Cormier Salem, Luc Descroix, Mohamadou Mawloud Diakhate, Elisabeth Habert, Boubou Aldiouma Sy & Labaly Touré

Urogenital schistosomiasis in three different water access in the Senegal river basin: prevalence and monitoring praziquantel efficacy and re-infection levels

Bruno Senghor, Eglantine Mathieu-Begné, Olivier Rey, Souleymane Doucouré, Doudou Sow, Bocar Diop, Mariama Sène, Jérôme Boissier & Cheikh Sokhna
Abstract Background Urogenital schistosomiasis is a neglected tropical disease most prevalent in sub-Saharan Africa. In the Senegal river basin, the construction of the Diama dam led to an increase and endemicity of schistosomiasis. Since 2009, praziquantel has frequently been used as preventive chemotherapy in the form of mass administration to Senegalese school-aged children without monitoring of the treatment efficacy and the prevalence after re-infection. This study aims to determine the current prevalence of urogenital schistosomiasis...

Additional file 4 of Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica

Rayan Awada, Maud Lepelley, David Breton, Aline Charpagne, Claudine Campa, Victoria Berry, Frédéric Georget, Jean-Christophe Breitler, Sophie Léran, Doâa Djerrab, Federico Martinez-Seidel, Patrick Descombes, Dominique Crouzillat, Benoît Bertrand & Hervé Etienne
Additional file 4: Figure S4. RT-qPCR verification of selected genes in five SE developmental stages L1, C1, C2, C3, and E1.

Additional file 2 of Urogenital schistosomiasis in three different water access in the Senegal river basin: prevalence and monitoring praziquantel efficacy and re-infection levels

Bruno Senghor, Eglantine Mathieu-Begné, Olivier Rey, Souleymane Doucouré, Doudou Sow, Bocar Diop, Mariama Sène, Jérôme Boissier & Cheikh Sokhna
Additional file 2: Table S1. Tables of anova tests

Additional file 1 of Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica

Rayan Awada, Maud Lepelley, David Breton, Aline Charpagne, Claudine Campa, Victoria Berry, Frédéric Georget, Jean-Christophe Breitler, Sophie Léran, Doâa Djerrab, Federico Martinez-Seidel, Patrick Descombes, Dominique Crouzillat, Benoît Bertrand & Hervé Etienne
Additional file 1: Figure S1. The availability of large-scale protocols for coffee somatic embryogenesis (SE) guaranteed reliability and development synchronization at each developmental stage as well as biological efficiency.

Additional file 4 of Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica

Rayan Awada, Maud Lepelley, David Breton, Aline Charpagne, Claudine Campa, Victoria Berry, Frédéric Georget, Jean-Christophe Breitler, Sophie Léran, Doâa Djerrab, Federico Martinez-Seidel, Patrick Descombes, Dominique Crouzillat, Benoît Bertrand & Hervé Etienne
Additional file 4: Figure S4. RT-qPCR verification of selected genes in five SE developmental stages L1, C1, C2, C3, and E1.

Empowerment-based support program for vulnerable populations living with diabetes, obesity or high blood pressure: a scoping review

Julia Eïd & Annabel Desgrées du Loû
Abstract Background The management of chronic diseases such as diabetes, obesity and high blood pressure is a major global health challenge, particularly among the most disadvantaged populations. Beyond the biomedical management of these diseases, comprehensive support that takes into account the peoples’ economic and social situation is fundamental. The objective of this scoping review is to create an inventory and an analysis of the different types of support for these chronic diseases among disadvantaged, immigrant...

Adaptation et résilience des agricultures en Afrique de l'Ouest : innovations agroécologiques et intégration des territoires

Ndjido Kane, Didier Orange & Laure Brun-Diallo

Amyotrophic lateral sclerosis mortality rates in Latin America and the Caribbean: a meta-analysis

Daniells Erazo, Jaime Luna, Pierre-Marie Preux, Marco Tulio Medina, Julien Magne, Farid Boumediene & Philippe Couratier
Background: Recent studies have described a low occurrence of Amyotrophic Lateral Sclerosis (ALS) in Latin America. Significant differences in ALS risk have been reported among ethnic populations in the region. We conducted a meta-analysis using population-based data to describe ALS mortality rates in Latin America. We explored sources of heterogeneity among key covariates. Methods: National mortality registries from Latin American countries were searched to identify ALS deaths according to the International Classification of Diseases (ICD-9:...

Agroecological transformation for sustainable food systems : insight on France-CGIAR research

Kwesi Atta-Krah, Jean-Luc Chotte, Chantal Gascuel, Vincent Gitz, Etienne Hainzelin, Bernard Hubert, Marcela Quintero & Fergus Sinclair

Data and R code from \"Grazing and ecosystem service delivery in global drylands\"

Fernando T. Maestre, Yoann Le Bagousse-Pinguet, David Eldridge, Hugo Saiz, Enrique Valencia, Miguel Berdugo, juan gaitan, Nicolas GROSS, Beatriz Gozalo, Victoria Ochoa, Miguel García-Gómez, Sergio Asensio, Betty J. Mendoza, César Plaza, Paloma Díaz-Martínez, Ana Rey, HANG-WEI HU, Ji-Zheng He, Anika Lehmann, Matthias C. Rillig, Simone Cesarz, Nico Eisenhauer, Eduardo Moreno Jiménez, Osvaldo E. Sala, Mehdi Abedi … & Biodesert consortium
There are two zip files with the data and R scripts used in the article "Maestre, F. T. et al. 2022. Grazing and ecosystem service delivery in global drylands. Science 378, 915–920".
The file "Main_Data_code.zip" contains the data and R code used in the main analyses of the paper. These data also include the location and major environmental characteristics of the plots surveyed.
The file "Livestock_data_code.zip" contains the data and R code used in...

Phylogenetic study of the New Caledonian endemic genus Adenodaphne (Lauraceae) confirms its synonymy with Litsea

Jérôme Munzinger, Gordon McPherson, Stacey Meyer & Chrissen Gemmill
The genus Adenodaphne is currently considered endemic to New Caledonia, but its distinction from Litsea is questionable based on morphological similarity. An earlier phylogenetic analysis (ITS) including one species of Adenodaphne and two Asian species of Litsea did support their close relationship but did not permit resolution of their generic boundary. We sampled the four species of Adenodaphne currently recognized (11 accessions) and 11 of the 13 endemic species of Litsea currently recognized, plus one...

Additional file 2 of Molecular investigation of malaria-infected patients in Djibouti city (2018–2021)

Rahma Abdi Moussa, Nasserdine Papa Mze, Houssein Yonis Arreh, Aicha Abdillahi Hamoud, Kahiya Mohamed Alaleh, Abdoul-Razak Yonis Omar, Warsama Osman Abdi, Samatar Kayad Guelleh, Abdoul-Ilah Ahmed Abdi, Mohamed Houmed Aboubaker, Leonardo K. Basco, Bouh Abdi Khaireh & Hervé Bogreau
Additional file 2: Figure S1. Age of patients by malaria status from four health facilities in Djibouti city between 2019 and 2021.

Molecular investigation of malaria-infected patients in Djibouti city (2018–2021)

Rahma Abdi Moussa, Nasserdine Papa Mze, Houssein Yonis Arreh, Aicha Abdillahi Hamoud, Kahiya Mohamed Alaleh, Abdoul-Razak Yonis Omar, Warsama Osman Abdi, Samatar Kayad Guelleh, Abdoul-Ilah Ahmed Abdi, Mohamed Houmed Aboubaker, Leonardo K. Basco, Bouh Abdi Khaireh & Hervé Bogreau
Abstract Background The Republic of Djibouti is a malaria endemic country that was in pre-elimination phase in 2006–2012. From 2013, however, malaria has re-emerged in the country, and its prevalence has been increasing every year. Given the co-circulation of several infectious agents in the country, the assessment of malaria infection based on microscopy or histidine-rich protein 2 (HRP2)-based rapid diagnostic tests (RDT) has shown its limitations. This study, therefore, aimed to assess the prevalence of...

Data from: Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms)

Julien Massoni, Thomas L. P. Couvreur & Hervé Sauquet
With 10,000 species, Magnoliidae are the largest clade of flowering plants outside monocots and eudicots. Despite an ancient and rich fossil history, the tempo and mode of diversification of Magnoliidae remain poorly known. Using a molecular data set of 12 markers and 220 species (representing >75% of genera in Magnoliidae) and six robust, internal fossil age constraints, we estimate divergence times and significant shifts of diversification across the clade. In addition, we test the sensitivity...

Data from: The effects of food web structure on ecosystem function exceeds those of precipitation

M. Kurtis Trzcinski, Diane S. Srivastava, Bruno Corbara, Olivier Dézerald, Céline Leroy, Jean-François Carrias, Alain Dejean & Régis Céréghino
Ecosystems are being stressed by climate change, but few studies have tested food web responses to changes in precipitation patterns and the consequences to ecosystem function. Fewer still have considered whether results from one geographic region can be applied to other regions, given the degree of community change over large biogeographic gradients. We assembled, in one field site, three types of macroinvertebrate communities within water-filled bromeliads. Two represented food webs containing both a fast filter...

Data from: Asexual queen succession in the higher termite Embiratermes neotenicus

Romain Fougeyrollas, Klára Dolejšová, David Sillam-Dussès, Virginie Roy, Chantal Poteaux, Robert Hanus & Yves Roisin
Asexual queen succession (AQS), in which workers, soldiers and dispersing reproductives are produced sexually while numerous non-dispersing queens arise through thelytokous parthenogenesis, has recently been described in three species of lower termites of the genus Reticulitermes. Here, we show that AQS is not an oddity restricted to a single genus of lower termites, but a more widespread strategy occurring also in the most advanced termite group, the higher termites (Termitidae). We analysed the genetic structure...

Data from: Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography

William J. Baker, Thomas L. P. Couvreur & Thomas L.P. Couvreur
AIM: Palms (Arecaceae/Palmae) are a model group for evolutionary studies in the tropics. Family-wide data on taxonomy, phylogenetics and distribution are now available, but a general framework of palm evolution is still lacking. The overall aim of this study, published in two companion papers, is to seek evolutionary explanations for the geographical distribution of palm lineages and species diversity patterns at global and regional levels. In this first paper we undertake a detailed analysis of...

Data from: Heritable variation in host tolerance and resistance inferred from a wild host– parasite system

Elise Mazé-Guilmo, Géraldine Loot, David James Páez, Thierry Lefèvre, Simon Blanchet, T. Lefevre, D. J. Paez & E. Maze-Guilmo
Hosts have evolved two distinct defence strategies against parasites: resistance (which prevents infection or limit parasite growth) and tolerance (which alleviates the fitness consequences of infection). However, heritable variation in resistance and tolerance and the genetic correlation between these two traits have rarely been characterized in wild host populations. Here, we estimate these parameters for both traits in Leuciscus burdigalensis, a freshwater fish parasitized by Tracheliastes polycolpus. We used a genetic database to construct a...

Data from: Reef accessibility impairs the protection of sharks

Jean-Baptiste Juhel, Laurent Vigliola, David Mouillot, Michel Kulbicki, Tom B. Letessier, Jessica J. Meeuwig & Laurent Wantiez
1. Reef sharks are declining worldwide under ever increasing fishing pressure with potential consequences on ecosystem functioning. Marine protected areas (MPAs) are currently one of the management tools to counteract the pervasive impacts of fishing. However, MPAs in which reef sharks are abundant tend to be located in remote and underexploited areas preventing a fair assessment of management effectiveness beyond remoteness from human activities. 2. Here we determine the conditions under which MPAs can effectively...

Data from: Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae)

María José Sanín, Patricia Zapata, Jean-Christophe Pintaud, Gloria Galeano, Adriana Bohórquez, Joseph Tohme & Michael Møller Hansen
Allele_scores_Ceroxylon_quindiuense_complexThese are allele scores (diploid) for populations studied in cited articlegenepop_Cquindicomplex2.txt

Data from: Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo-Pacific

Théo Gaboriau, Fabien Leprieur, David Mouillot & Nicolas Hubert
The role of speciation processes in shaping current biodiversity patterns represents a major scientific question for ecologists and biogeographers. Hence, numerous methods have been developed to determine the geography of speciation based on co-occurrence between sister-species. Most of these methods rely on the correlation between divergence time and several metrics based on the geographic ranges of sister-taxa (i.e. overlap, asymmetry). The relationship between divergence time and these metrics has scarcely been examined in a spatial...

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