5 Works

Data from: A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

John E. McCormack, Michael G. Harvey, Brant C. Faircloth, Nicholas G. Crawford, Travis C. Glenn & Robb T. Brumfield
Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous lineages. We applied a new phylogenomic approach to resolve relationships in Neoaves using target enrichment (sequence capture) and high-throughput sequencing of ultraconserved elements (UCEs) in avian genomes. We collected sequence data from UCE loci for 32 members of Neoaves and one outgroup (chicken) and analyzed data sets that differed...

Data from: Dynamics of coral reef benthic assemblages of the Abrolhos Bank, eastern Brazil: inferences on natural and anthropogenic drivers

Ronaldo B. Francini-Filho, Ericka O. C. Coni, Pedro M. Meirelles, Gilberto M. Amado-Filho, Fabiano L. Thompson, Guilherme H. Pereira-Filho, Alex C. Bastos, Douglas P. Abrantes, Camilo M. Ferreira, Fernando Z. Gibran, Arthur Z. Güth, Paulo Y. G. Sumida, Nara L. Oliveira, Les Kaufman, Carolina V. Minte-Vera & Rodrigo L. Moura
The Abrolhos Bank (eastern Brazil) encompasses the largest and richest coral reefs of the South Atlantic. Coral reef benthic assemblages of the region were monitored from 2003 to 2008. Two habitats (pinnacles’ tops and walls) were sampled per site with 3-10 sites sampled within different reef areas. Different methodologies were applied in two distinct sampling periods: 2003-2005 and 2006-2008. Spatial coverage and taxonomic resolution were lower in the former than in the latter period. Benthic...

Data from: Coalescent and biophysical models of stepping-stone gene flow in Neritid snails

Eric D. Crandall, Eric A. Treml & Paul H. Barber
Marine species in the Indo-Pacific have ranges that can span thousands of kilometers, yet studies increasingly suggest that mean larval dispersal distances are less than historically assumed. Gene flow across these ranges must therefore rely to some extent on larval dispersal among intermediate “stepping-stone” populations in combination with long-distance dispersal far beyond the mean of the dispersal kernel. We evaluate the strength of stepping-stone dynamics by employing a spatially explicit biophysical model of larval dispersal...

Data from: The evolution of locomotor rhythmicity in tetrapods

Callum F. Ross, Richard W. Blob, David R. Carrier, Monica A. Daley, Stephen M. Deban, Brigitte Demes, Janaya L. Gripper, Jose Iriarte-Diaz, Brandon Michael Kilbourne, Tobias Landberg, John D. Polk, Nadja Schilling & Bieke Vanhooydonck
Differences in rhythmicity (relative variance in cycle period) between mammal, fish, and lizard feeding systems have been hypothesized to be associated with differences in their sensorimotor control systems. We tested this hypothesis by examining whether the locomotion of tachymetabolic tetrapods (birds and mammals) is more rhythmic than that of bradymetabolic tetrapods (lizards, alligators, turtles, salamanders). Species averages of intra-individual coefficients of variation in cycle period were compared while controlling for gait and substrate. Variance in...

Data from: More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

Nicholas G. Crawford, Brant C. Faircloth, John E. McCormack, Robb T. Brumfield, Kevin Winker & Travis C. Glenn
We present the first genomic-scale analysis addressing the phylogenetic position of turtles, using over 1,000 loci from representatives of all major reptile lineages including tuatara. Previously, studies of morphological traits positioned turtles either at the base of the reptile tree or with lizards, snakes, and tuatara (lepidosaurs), whereas molecular analyses typically allied turtles with crocodiles and birds (archosaurs). A recent analysis of shared microRNA families found that turtles are more closely related to lepidosaurs. To...

Registration Year

  • 2012

Resource Types

  • Dataset


  • Boston University
  • University of Georgia
  • Louisiana State University of Alexandria
  • University of California Los Angeles
  • University of Antwerp
  • Federal University of Paraíba
  • University of Queensland
  • Universidade Federal Rural do Rio de Janeiro
  • Universidade Estadual de Santa Cruz
  • University of Chicago