205,514 Works

MosquitoAlert/Data: v1.200.2019

Agustí Escobar Rubies & Mosquito Alert
Release of version 1.200.2019

CamFlow/information-flow-patch 5.2.1

Thomas Pasquier
Create a patch that implements the changes (and more) to the LSM framework suggested in the paper: Verifying the reliability of operating system-level information flow control systems in linux, Georget et al., ACM/IEEE Workshop on Formal Methods in Software Engineering (FormliSE'17) 2017.

MUSDB18 - a corpus for music separation

Zafar Rafii, Antoine Liutkus, Fabian-Robert Stöter, Stylianos Ioannis Mimilakis & Rachel Bittner
The sigsep musdb18 data set consists of a total of 150 full-track songs of different styles and includes both the stereo mixtures and the original sources, divided between a training subset and a test subset. Its purpose is to serve as a reference database for the design and the evaluation of source separation algorithms. The objective of such signal processing methods is to estimate one or more sources from a set of mixtures, e.g. for...

MUSDB18 - a corpus for music separation

Zafar Rafii, Antoine Liutkus, Fabian-Robert Stöter, Stylianos Ioannis Mimilakis & Rachel Bittner
The sigsep musdb18 data set consists of a total of 150 full-track songs of different styles and includes both the stereo mixtures and the original sources, divided between a training subset and a test subset. Its purpose is to serve as a reference database for the design and the evaluation of source separation algorithms. The objective of such signal processing methods is to estimate one or more sources from a set of mixtures, e.g. for...

geomdl v5.2.8

Onur Rauf Bingol
Update control_points module Fix a bug in operations.refine_knotvector failing to work with Bezier-type geometries Fix a bug in normal vector evaluation for curves (as discussed in #49 and #50) Minor improvements and documentation updates

casimp/pyxe: XRD Strain Analysis

Chris Simpson
v 0.9.1 Added temperature dependent strain calculations Generalised monoI12 module Updated docs Bug fixes v 0.9: Large scale breaking changes to all aspects of projects Multi peak (Pawley) fitting Cleaner interface Significant testing

acclimate

Sven Willner & Christian Otto
Acclimate - Model for economic loss propagation

jmenglund/predsim: v0.7.0

Markus Englund
predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy. The code has been tested with Python 3.3 and 3.6. Source...

root-project/root: First release of the v6-18 series.

Fons Rademakers, Philippe Canal, Axel Naumann, Olivier Couet, Lorenzo Moneta, Vassil Vassilev, Danilo Piparo, Gerardo Ganis, Sergey Linev, Bertrand Bellenot, Wouter Verkerke, Enrico Guiraud, Pere Mato, Guilherme Amadio, Matevž Tadel, Andrei Gheata, Jakob Blomer, Oksana Shadura, Kim Albertsson, Brian P Bockelman, Iliana Betsou, Javier Cervantes Villanueva, Alexandra Dobrescu, Giulio Eulisse, Stephan Hageboeck … & Stefan Wunsch
See https://root.cern/content/release-61800 for the highlights and a link to the release notes.

LanguageMachines/libfolia: v2.2

Ko Van Der Sloot & Maarten Van Gompel
Bug fix release. Folia::Engine choked on some complex FoLiA. Solved by refactoring and in fact simplifying some code. (Frog issue #77 revealed this) added flush() on document output to streams. (frog issue #72) improved output in debugging mode

Simulations of POPC lipid bilayer in water solution at various NaCl, KCl and CaCl2 concentrations using ECC-POPC force field

Josef Melcr
Classical molecular dynamics simulations of a POPC lipid bilayer in water solution at various NaCl, KCl and CaCl2 concentrations using ECC-POPC force field parameters, SPC/E water model and ECC-ions. file names report molar fraction of cations (i.e. not bulk concentrations) simulations performed with Gromacs 5.1.4 (*.xtc files) and openMM 7 (*.dcd files) simulation length 300 ns temperature 313 K (otherwise noted) Gromacs simulation setting is in the file npt_lipid_bilayer.mdp

tidalcycles/Tidal: IICON

Alex McLean, Lennart Melzer, Ben Gold, David Ogborn, Vivid-Synth, Julian Rohrhuber, XiNNiW, Tony Day, Pd3v, Nini-Faroux, Tpltnt, Matt Spendlove, Steve Purcell, Esteban Betancur, Alfredo Di Napoli, Lars Fabian Tuchel, Mauro , Bernhard Wagner, Guy John, Erich Grunewald, R Tyler McLaughlin, Mads Kjeldgaard, Garrison Jensen, Olig1905, Calum Gunn … & Adam Bergmark
'chew' - like bite, but speeds playback rate up and down variable probability for ? in mini notation chooseBy takes modulo of index to avoid out of bounds errors 'rate' control param Fix dependencies for parsec/colour

arose/nglview: v2.6.0

Hai Nguyen, Alexander Rose, Jan Janssen, Hugo , Martin K. Scherer, Stefan Doerr, David Dotson, Max Linke, Yunqi Shao, Richard Gowers, Npm-To-Cdn-Bot (By Forbes Lindesay), Martin-Hunt, Lily Wang & Joe Greener
IPython widget to interactively view molecular structures and trajectories

CamDavidsonPilon/lifelines: v0.22.1

Cameron Davidson-Pilon, Jonas Kalderstam, Paul Zivich, Ben Kuhn, Andrew Fiore-Gartland, Luis Moneda, Gabriel , Daniel WIlson, Alex Parij, Kyle Stark, Steven Anton, Lilian Besson, Jona , Harsh Gadgil, Dave Golland, Sean Hussey, Ravin Kumar, Javad Noorbakhsh, Andreas Klintberg, Eric Martin, Eduardo Ochoa, Dylan Albrecht, Dhuynh, Dmitry Medvinsky, Denis Zgonjanin … & André F. Rendeiro
0.22.1 New features New univariate model, GeneralizedGammaFitter. This model contains many sub-models, so it is a good model to check fits. added a warning when a time-varying dataset had instantaneous deaths. added a initial_point option in univariate parametric fitters. initial_point kwarg is present in parametric univariate fitters .fit event_table is now an attribute on all univariate fitters (if right censoring) improvements to lifelines.utils.gamma API changes In AFT models, the column names in confidence_intervals_ has changed...

buddhi1980/mandelbulber2: Continuous build

Krzysztof Marczak, Sebastian Jennen, Mclarekin, Coast77777777777, Rikard Falkeborn, Bermarte, Orbitcowboy, Biberino, Jeroen Rijckaert, Bruno Duyé, Luchansky, Psyriccio, Probonopd, Danuni, Valera Rozuvan, The Gitter Badger, Martin Herkt & KnifeOfPi
Travis CI build log: https://travis-ci.org/buddhi1980/mandelbulber2/builds/558501920

Towards a Framework for Predictive Mathematical Modeling of the Biomechanical Forces Causing Brain Tumor Mass-Effect

Daniel Abler, Russell Rockne & Philippe Büchler
GBMs present with different growth phenotypes, ranging from invasive lesions without notable mass-effect to strongly displacing lesions that induce mechanical stresses and result in healthy-tissue deformation, midline shift or herniation. Biomechanical forces, such as those resulting from displacive tumor growth, are recognized to shape the tumor environment and to contribute to tumor progression. We therefore expect that biomechanical forces exerted by lesions on the brain parenchyma have implications on the biophysical level, and that they...

Towards a Framework for Predictive Mathematical Modeling of the Biomechanical Forces Causing Brain Tumor Mass-Effect

Daniel Abler, Russell Rockne & Philippe Büchler
GBMs present with different growth phenotypes, ranging from invasive lesions without notable mass-effect to strongly displacing lesions that induce mechanical stresses and result in healthy-tissue deformation, midline shift or herniation. Biomechanical forces, such as those resulting from displacive tumor growth, are recognized to shape the tumor environment and to contribute to tumor progression. We therefore expect that biomechanical forces exerted by lesions on the brain parenchyma have implications on the biophysical level, and that they...

bmcfee/pumpp: 0.5.0

Brian McFee, Waldir Pimenta & Justin Salamon
This release drops support for python 2.7 The feature transformation API has been extended to allow explicit selection of data types (float32 by default). A quantization method has been added to automatically convert real-valued features (eg spectral magnitudes) to low-precision integer values (uint8). This is triggered automatically when features are constructed with dtype='uint8'. The layer construction API has been expanded to eventually support frameworks outside of Keras.

prjemian/spec2nexus: 2021.0.1

Pete R Jemian & John Hammonds
plugin loading and documentation

SantanderMetGroup/transformeR: submission downscaleR EMS paper

Joaquin Bedia, Miturbide, Jose M. Gutierrez, Matteo De Felice & Ana
New in 1.5.1 Minor bug fix in binaryGrid New helper matchStations for consistent reordering of station datasets Improvement in subsetGrid for preservation of all station metadata

E-Cell System version 4

Kazunari Kaizu, Kozo Nishida, Yuki Sakamoto, Suguru Kato, Toru Niina, Naoki Nishida, Naohiro Aota, Moriyoshi Koizumi & Koichi Takahashi
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena

globalbioticinteractions/elton 0.5.12

Jorrit Poelen, Tobias Kuhn & Katrin Leinweber
Features n/a Improvements upgrade to globi libs v0.12.6 (see https://github.com/jhpoelen/eol-globi-data/releases/tag/v0.12.6) for supporting interactions.csv for template datasets Bugs n/a

OpenPIV/openpiv-python: Updated structure for easier import and installation using binary wheels

Alex Liberzon, Davide Lasagna, Mathias Aubert, Pete Bachant, Jakirkham, Ranleu, Joe Borg, Cameron Dallas & Boyko Vodenicharski
OpenPIV is an open source Particle Image Velocimetry analysis software written in Python, Matlab and C++

jhpoelen/eol-globi-data v0.12.6

Jorrit Poelen, James Simons, Chris Mungall, José R. Ferrer Paris, Robert Reiz, Tmitchell1, Proopnarine, Shannon VanWagner & Brian Hayden
Features n/a Improvements support interactions.csv as well as interactions.tsv to reduce friction for template datasets. Bug fixes n/a

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