244 Works

Bodr: Bodr 10

Egon Willighagen
Release notes are available from: http://chem-bla-ics.blogspot.co.uk/2013/08/the-blue-obelisk-data-repositorys-10.html

Ambit.Js: Release 0.0.2

Egon Willighagen
Second release: extended support for the Substance API initial support for the Bundle API examples online at http://enanomapper.github.io/ambit.js/ API documentation online at http://enanomapper.github.io/ambit.js/api/

Metabolite BridgeDb ID Mapping Database (20170826)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 154, and Wikidata (26 August 2017) as data sources. Two significant changes: Mappings to the EPA CompTox Dashboard have been added (about 36 thousand) and it is using a newer HMDB 3.6 version with many more compounds. If you experience problems, please report on the project page. See the attached QC for more details on the changes.
If you use this data in...

Metabolite BridgeDb ID Mapping Database (20170826)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 154, and Wikidata (26 August 2017) as data sources. Two significant changes: Mappings to the EPA CompTox Dashboard have been added (about 36 thousand) and it is using a newer HMDB 3.6 version with many more compounds. If you experience problems, please report on the project page. See the attached QC for more details on the changes.
If you use this data in...

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170709)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170709)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

WikiPathways SD file (v.2)

Egon Willighagen
Second release of a Structure Data File (SDF) containing metabolites found in WikiPathways. The file is created with SMILES strings from Wikidata based on the ID mappings to metabolites in the pathways, and converted into a SD file with CDK 1.5.14.

WikiPathways SD file (v.2)

Egon Willighagen
Second release of a Structure Data File (SDF) containing metabolites found in WikiPathways. The file is created with SMILES strings from Wikidata based on the ID mappings to metabolites in the pathways, and converted into a SD file with CDK 1.5.14.

Metabolite BridgeDb ID Mapping Database (20170408)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 150, and Wikidata (8 April 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170408)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 150, and Wikidata (8 April 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Metabolite BridgeDb ID Mapping Database (20170504)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 151, and Wikidata (4 May 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170504)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 151, and Wikidata (4 May 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20171203)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 4.0 (3 December 2017), ChEBI 158, and Wikidata (3 December 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite this data set, and the BridgeDb, ChEBI, and HMDB articles.

Metabolite BridgeDb ID Mapping Database (20171008)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 156, and Wikidata (8 October 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite that data set, and the BridgeDb, ChEBI, and HMDB articles.

Metabolite BridgeDb ID Mapping Database (20171008)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 156, and Wikidata (8 October 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite that data set, and the BridgeDb, ChEBI, and HMDB articles.

Capturing reuse in altmetrics

Egon Willighagen
A brief idea

Nanotoxicity from Ionization Enthalpy

Egon Willighagen
Data from the "Using nano-QSAR to predict the cytotoxicity of metal oxide nanoparticles" paper in Nature Nanotechnology (doi:10.1038/nnano.2011.10) showing the main finding.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Resource Types

  • Dataset
    69
  • Software
    64
  • Text
    56
  • Collection
    39
  • Image
    9
  • Other
    5
  • Audiovisual
    2

Publication Year

  • 2018
    4
  • 2017
    78
  • 2016
    51
  • 2015
    67
  • 2014
    20
  • 2013
    15
  • 2012
    7
  • 2011
    2

Registration Year

  • 2018
    7
  • 2017
    117
  • 2016
    66
  • 2015
    28
  • 2014
    15
  • 2013
    7
  • 2012
    4

Data Centers

  • figshare Academic Research System
    145
  • ZENODO - Research. Shared.
    89
  • Faculty of 1000 Research Ltd
    6
  • ResearchGate
    2
  • National Cancer Institute, Bioconductor
    1
  • University of Cambridge
    1