269 Works

Bodr: Bodr 10

Egon Willighagen
Release notes are available from: http://chem-bla-ics.blogspot.co.uk/2013/08/the-blue-obelisk-data-repositorys-10.html

Ambit.Js: Release 0.0.2

Egon Willighagen
Second release: extended support for the Substance API initial support for the Bundle API examples online at http://enanomapper.github.io/ambit.js/ API documentation online at http://enanomapper.github.io/ambit.js/api/

Capturing Reuse In Altmetrics

Egon Willighagen
A brief idea

Metabolite BridgeDb ID Mapping Database (20170709)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170709)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 153, and Wikidata (9 July 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20171008)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 156, and Wikidata (8 October 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite that data set, and the BridgeDb, ChEBI, and HMDB articles.

Metabolite BridgeDb ID Mapping Database (20171008)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 156, and Wikidata (8 October 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite that data set, and the BridgeDb, ChEBI, and HMDB articles.

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170621)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 152, and Wikidata (21 June 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170826)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 154, and Wikidata (26 August 2017) as data sources. Two significant changes: Mappings to the EPA CompTox Dashboard have been added (about 36 thousand) and it is using a newer HMDB 3.6 version with many more compounds. If you experience problems, please report on the project page. See the attached QC for more details on the changes.
If you use this data in...

Metabolite BridgeDb ID Mapping Database (20170826)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6 (26 August 2017), ChEBI 154, and Wikidata (26 August 2017) as data sources. Two significant changes: Mappings to the EPA CompTox Dashboard have been added (about 36 thousand) and it is using a newer HMDB 3.6 version with many more compounds. If you experience problems, please report on the project page. See the attached QC for more details on the changes.
If you use this data in...

Metabolite BridgeDb ID Mapping Database (20171203)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 4.0 (3 December 2017), ChEBI 158, and Wikidata (3 December 2017) as data sources. No significant changes but just updated data.
If you use this data in your research, please cite this data set, and the BridgeDb, ChEBI, and HMDB articles.

The WikiPathways and EU NanoSafety Cluster Use Cases

Egon Willighagen
Use cases of grant information in Wikidata to support projects like WikiPathways and the EU NanoSafety Cluster.

The WikiPathways and EU NanoSafety Cluster Use Cases

Egon Willighagen
Use cases of grant information in Wikidata to support projects like WikiPathways and the EU NanoSafety Cluster.

Metabolite BridgeDb ID Mapping Database (20161012)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 144, and Wikidata (12 October 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20161012)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 144, and Wikidata (12 October 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

NanoWiki 4

Egon Willighagen
Added more source annotation and SMILES info for many materialsm and physchem endpoints are now annotated with ontology terms. Furthermore, nanomaterials can now be typed with a specific ontology term, such as the JRC representative test materials.

NanoWiki (release 4)

Egon Willighagen
Added more source annotation and SMILES info for many materialsm and physchem endpoints are now annotated with ontology terms. Furthermore, nanomaterials can now be typed with a specific ontology term, such as the JRC representative test materials.

Metabolite BridgeDb ID Mapping Database (20161106)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 145, and Wikidata (5 November 2016) as data sources. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20161106)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 145, and Wikidata (5 November 2016) as data sources. See the attached QC for more details on the changes.

NanoWiki (release 4)

Egon Willighagen
Added more source annotation and SMILES info for many materialsm and physchem endpoints are now annotated with ontology terms. Furthermore, nanomaterials can now be typed with a specific ontology term, such as the JRC representative test materials.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Resource Types

  • Dataset
    71
  • Text
    69
  • Software
    66
  • Collection
    39
  • Image
    13
  • Audiovisual
    6
  • Other
    5

Publication Year

  • 2018
    25
  • 2017
    75
  • 2016
    50
  • 2015
    68
  • 2014
    23
  • 2013
    19
  • 2012
    7
  • 2011
    2

Registration Year

  • 2018
    33
  • 2017
    116
  • 2016
    66
  • 2015
    28
  • 2014
    15
  • 2013
    7
  • 2012
    4

Data Centers

  • figshare Academic Research System
    157
  • ZENODO - Research. Shared.
    99
  • Faculty of 1000 Research Ltd
    6
  • National Cancer Institute, Bioconductor
    2
  • ResearchGate
    2
  • U.S. Environmental Protection Agency
    2
  • University of Cambridge
    1