269 Works

NanoWiki (release 3)

Egon Willighagen
Third release of the NanoWiki dataset. This release extends the Linked Data feature, introducing owl:sameAs and skos:closeMatch. The first is used in the new ChEMBL bundle with a few derived fullerenes. A GEO bundle has also been added. Most nanomaterials are now linked directly to articles (with DOIs). The data now describes 420 nanomaterials with 900 measurements (physchem and bioassay data) from 43 research articles.

Metabolite BridgeDb ID Mapping Database (20160605)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 140, and Wikidata (4 June 2016) as data sources.
This release fixes storing of ChEBI identifiers in both alternative forms and adds names from Wikidata, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20160605)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 140, and Wikidata (4 June 2016) as data sources.
This release fixes storing of ChEBI identifiers in both alternative forms and adds names from Wikidata, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20160910)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 142, and Wikidata (7 September 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20161012)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 144, and Wikidata (12 October 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20161012)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 144, and Wikidata (12 October 2016) as data sources. This release includes names of compounds in ChEBI, useful for drawing new metabolic pathways in PathVisio.
See the attached QC for more details on the changes.

Nanotoxicity from Ionization Enthalpy

Egon Willighagen
Data from the "Using nano-QSAR to predict the cytotoxicity of metal oxide nanoparticles" paper in Nature Nanotechnology (doi:10.1038/nnano.2011.10) showing the main finding.

Metabolite BridgeDb ID Mapping Database (20170504)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 151, and Wikidata (4 May 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170504)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 151, and Wikidata (4 May 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Metabolite BridgeDb ID Mapping Database (20170408)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 150, and Wikidata (8 April 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Metabolite BridgeDb ID Mapping Database (20170408)

Egon Willighagen
BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 150, and Wikidata (8 April 2017) as data sources. No significant changes, and just updated mappings. See the attached QC for more details on the changes.

Nanotoxicity from Ionization Enthalpy

Egon Willighagen
Data from the "Using nano-QSAR to predict the cytotoxicity of metal oxide nanoparticles" paper in Nature Nanotechnology (doi:10.1038/nnano.2011.10) showing the main finding.

A genetic switch

Egon Willighagen
Reaction acting as genetic switch, catalyzed by hydrogen peroxide. Published inĀ Govan, J. M., McIver, A. L., Riggsbee, C. & Deiters, A. Hydrogen peroxide induced activation of gene expression in mammalian cells using boronate estrone derivatives. Angewandte Chemie International Edition n/a (2012). URL http://dx.doi.org/10.1002/anie.201203222.

ChemPedia as RDF

Egon Willighagen

Meta Meta Meta

Egon Willighagen

Resource Types

  • Dataset
    71
  • Text
    69
  • Software
    66
  • Collection
    39
  • Image
    13
  • Audiovisual
    6
  • Other
    5

Publication Year

  • 2018
    25
  • 2017
    75
  • 2016
    50
  • 2015
    68
  • 2014
    23
  • 2013
    19
  • 2012
    7
  • 2011
    2

Registration Year

  • 2018
    33
  • 2017
    116
  • 2016
    66
  • 2015
    28
  • 2014
    15
  • 2013
    7
  • 2012
    4

Data Centers

  • figshare Academic Research System
    157
  • ZENODO - Research. Shared.
    99
  • Faculty of 1000 Research Ltd
    6
  • National Cancer Institute, Bioconductor
    2
  • ResearchGate
    2
  • U.S. Environmental Protection Agency
    2
  • University of Cambridge
    1