64 Works

Bodr: Bodr 10

Egon Willighagen
Release notes are available from: http://chem-bla-ics.blogspot.co.uk/2013/08/the-blue-obelisk-data-repositorys-10.html

Ambit.Js: Release 0.0.2

Egon Willighagen
Second release: extended support for the Substance API initial support for the Bundle API examples online at http://enanomapper.github.io/ambit.js/ API documentation online at http://enanomapper.github.io/ambit.js/api/

Larsgw/Citation.Js V0.3.1

Lars Willighagen & Egon Willighagen
Added Options parameter in parseInput and parseInputAsync Option for max parsing chain length Option to generate parsing chain data in _graph property Option to force type when parsing Changed Options API in Cite and Cite.async Cite(data, outputOptions) // BECOMES Cite(data, { ...parsingOptions, output: outputOptions }) Author ordinal in Wikidata props is now a property _ordinal instead of an array element Parsing invalid dates now returns input as literal date instead of an empty date-parts Refactored...

Larsgw/Citation.Js V0.3.3

Lars Willighagen & Egon Willighagen
Added A lot of Wikidata entry type mappings Support for option-less piping stdin -> stdout in the CLI Changed Greatly improve name parsing Wikidata entry type default is now book to align with, among other things, BibTeX Fixed Unknown Wikidata entry type now actually defaults to something CLI now uses the API changed in 0.3.1

Larsgw/Citation.Js V0.3.2

Lars Willighagen & Egon Willighagen
Added New Wikidata field mappings (see #76) Changed BibTeX name field output now uses reverse notation Main parsing function aliases/shortcuts: Cite.normalise() -> Cite.input() Cite.normaliseAsync() -> Cite.inputAsync()

Larsgw/Citation.Js V0.3.0

Lars Willighagen & Egon Willighagen
Release v0.3.0.

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

Larsgw/Citation.Js: V0.3.4

Lars Willighagen, Egon Willighagen & Johannes Wienke
Citation.js converts formats like BibTeX, Wikidata JSON and ContentMine JSON to CSL-JSON to convert to other formats like APA, Vancouver and back to BibTeX. Changed Updated README Fixed Command sequence normalisation in BibTeX BibTeX test case output

Larsgw/Citation.Js: V0.3.4

Lars Willighagen, Egon Willighagen & Johannes Wienke
Citation.js converts formats like BibTeX, Wikidata JSON and ContentMine JSON to CSL-JSON to convert to other formats like APA, Vancouver and back to BibTeX. Changed Updated README Fixed Command sequence normalisation in BibTeX BibTeX test case output

Ops4J: Release 0.0.1

Egon Willighagen, StaffanArvidsson & Peter Ansell
First release of the Java client for Open PHACTS that I created some time ago for the R package ("ropenphacts") and the Bioclipse manager. support for the 1.4 and 1.5 API

Denisesl22/Create-Bridgedb-Metabolites: Metabolites_20180201.Bridge

Egon Willighagen, De & Kozo Nishida
Mapping sources: HMDB 4.0, ChEBI 160, Wikidata (2018-02-01) Compatible with old and new HMDB identifier structure!

Denisesl22/Create-Bridgedb-Metabolites: Metabolites_20180201.Bridge

Egon Willighagen, De & Kozo Nishida
Mapping sources: HMDB 4.0, ChEBI 160, Wikidata (2018-02-01) Compatible with old and new HMDB identifier structure!

Enanomapper/Ontologies: Final Release Of Enanomapper Ontology

JKChang, Janna Hastings, Egon Willighagen, Fehrhart & Lrieswijk
v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3. What's new in eNM V4.0: 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors. Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.). As a byproduct of the development of the eNanoMapper Ontology, interaction...

Enanomapper/Ontologies: Final Release Of Enanomapper Ontology

JKChang, Janna Hastings, Egon Willighagen, Fehrhart & Lrieswijk
v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3. What's new in eNM V4.0: 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors. Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.). As a byproduct of the development of the eNanoMapper Ontology, interaction...

Doi For Wprdf Paper

Andrawaag, Egon Willighagen, Alexander Pico & Anders Riutta
Java source for conversion of WikiPathways GPML to triples

Scholia - March 2017

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia Python package, including its web service. Packaged for workshop paper March 2017.

ops.js: OPS.js 3.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Elblood, Egon Willighagen & Andrawaag
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 3.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch.

ops.js: OPS.js 4.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 4.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch. New release created due to change of response from pathways by target.

rrdf: Release 2.2.1

Egon Willighagen, Ryan Kohl & Carl Boettiger
This release has the following changes: adds (unit) testing with the testthat package adds a tripleCount(store) method some documentation improvements typo in package description now lists all formats in asString() add.data.triple() and load.rdf() should now stop() when exceptions happen (closes #10) add.data.triple() now checks the data type given sparql.remote() now discusses bif:contains (closes #32) now uses missing() instead of is.null() for input checking (addresses #34)

ops.js: OPS.js 5.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 5.0.0 is compatible with the 1.4 API (and may be backwards compatible with 1.3 for most API calls). New release created due to change of response from target & compound class pharmacology.

Edamontology/Edamontology: Edam 1.18

Hervé Ménager, Matúš Kalaš, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.18 EDAM_1.18 includes: EDAM is now available in 2 additional formats: CSV and TSV http://edamontology.org/EDAM.csv is optimised for use in spreadsheet apps (e.g. Excel) http://edamontology.org/EDAM.tsv is optimised for scripting Available for EDAM versions 1.16 and newer More details in #268 EDAM versions are now graphically browsable online in WebProtégé Free registration required Available for EDAM versions 1.16 and newer, including the unstable development...

Edamontology/Edamontology: Edam 1.20

Matúš Kalaš, Hervé Ménager, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.20 See the improved https://github.com/edamontology/edamontology/blob/1.20/changelog-detailed.md#edam_120owl for the detailed list of semantic changes in the EDAM ontology. Summary of changes Numerous Formats added (27, listed in https://github.com/edamontology/edamontology/blob/1.20/changelog-detailed.md#new-concepts-120) Added Topics Agricultural Science and Metagenomic sequencing Improved a number of synonyms and labels (especially among Operations and Topics) Fixed a couple of bugs in syntax and subset Binary format defined as strictly disjoint with HTML, XML,...

Edamontology/Edamontology: Edam 1.19

Matúš Kalaš, Hervé Ménager, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.19 Summary of changes Various deprecations, synonyms, and rearrangements in the Operation sub-ontology Clean-up of technical artifacts: most newlines and all tab characters removed (from definitions etc.), corrections of wrong created_in-s, corrections of deprecated concepts (subset-s, relations, replacement concepts, etc.) Clean-up of the git repo Changes and additions of concepts related to electron microscopy Other updates (e.g. among Identifiers and Formats) Changes in...

Rrdf: Release 2.1.2

Egon Willighagen, Richard Zijdeman, Ryan Kohl, Carl Boettiger & Davide Ceolin
This release has the following changes: updated documentation datatypes or properties now also include double, NOTATION, and QName

Resource Types

  • Software
    64

Publication Year

  • 2018
    4
  • 2017
    25
  • 2016
    5
  • 2015
    21
  • 2014
    9

Registration Year

  • 2018
    6
  • 2017
    28
  • 2016
    2
  • 2015
    19
  • 2014
    9

Data Centers

  • ZENODO - Research. Shared.
    61
  • figshare Academic Research System
    2
  • National Cancer Institute, Bioconductor
    1