66 Works

Bodr: Bodr 10

Egon Willighagen
Release notes are available from: http://chem-bla-ics.blogspot.co.uk/2013/08/the-blue-obelisk-data-repositorys-10.html

Ambit.Js: Release 0.0.2

Egon Willighagen
Second release: extended support for the Substance API initial support for the Bundle API examples online at http://enanomapper.github.io/ambit.js/ API documentation online at http://enanomapper.github.io/ambit.js/api/

Larsgw/Citation.Js V0.3.1

Lars Willighagen & Egon Willighagen
Added Options parameter in parseInput and parseInputAsync Option for max parsing chain length Option to generate parsing chain data in _graph property Option to force type when parsing Changed Options API in Cite and Cite.async Cite(data, outputOptions) // BECOMES Cite(data, { ...parsingOptions, output: outputOptions }) Author ordinal in Wikidata props is now a property _ordinal instead of an array element Parsing invalid dates now returns input as literal date instead of an empty date-parts Refactored...

Larsgw/Citation.Js V0.3.0

Lars Willighagen & Egon Willighagen
Release v0.3.0.

Larsgw/Citation.Js V0.3.3

Lars Willighagen & Egon Willighagen
Added A lot of Wikidata entry type mappings Support for option-less piping stdin -> stdout in the CLI Changed Greatly improve name parsing Wikidata entry type default is now book to align with, among other things, BibTeX Fixed Unknown Wikidata entry type now actually defaults to something CLI now uses the API changed in 0.3.1

Larsgw/Citation.Js V0.3.2

Lars Willighagen & Egon Willighagen
Added New Wikidata field mappings (see #76) Changed BibTeX name field output now uses reverse notation Main parsing function aliases/shortcuts: Cite.normalise() -> Cite.input() Cite.normaliseAsync() -> Cite.inputAsync()

Larsgw/Citation.Js V0.3.0

Lars Willighagen & Egon Willighagen
Release v0.3.0.

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

rWikiPathways

Alex Pico Egon Willighagen

Larsgw/Citation.Js: V0.3.4

Lars Willighagen, Egon Willighagen & Johannes Wienke
Citation.js converts formats like BibTeX, Wikidata JSON and ContentMine JSON to CSL-JSON to convert to other formats like APA, Vancouver and back to BibTeX. Changed Updated README Fixed Command sequence normalisation in BibTeX BibTeX test case output

Denisesl22/Create-Bridgedb-Metabolites: Metabolites_20180201.Bridge

Egon Willighagen, De & Kozo Nishida
Mapping sources: HMDB 4.0, ChEBI 160, Wikidata (2018-02-01) Compatible with old and new HMDB identifier structure!

Denisesl22/Create-Bridgedb-Metabolites: Metabolites_20180201.Bridge

Egon Willighagen, De & Kozo Nishida
Mapping sources: HMDB 4.0, ChEBI 160, Wikidata (2018-02-01) Compatible with old and new HMDB identifier structure!

Ops4J: Release 0.0.1

Egon Willighagen, StaffanArvidsson & Peter Ansell
First release of the Java client for Open PHACTS that I created some time ago for the R package ("ropenphacts") and the Bioclipse manager. support for the 1.4 and 1.5 API

Larsgw/Citation.Js: V0.4.0-3

Lars Willighagen, Egon Willighagen, The Gitter Badger & Johannes Wienke
Citation.js converts formats like BibTeX, Wikidata JSON and ContentMine JSON to CSL-JSON to convert to other formats like APA, Vancouver and back to BibTeX. Added RIS output support (#125) Refactored A lot of the building scripts All code uses the util fetchFile(Async) functions, to make testing easier Fixed Subtle type checking bug in translation scheme parsing code (#128) Logging API not supported on Node.js v6 (#124)

Scholia - March 2017

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia Python package, including its web service. Packaged for workshop paper March 2017.

Rrdf: Release 2.2.1

Egon Willighagen, Ryan Kohl & Carl Boettiger
This release has the following changes: adds (unit) testing with the testthat package adds a tripleCount(store) method some documentation improvements typo in package description now lists all formats in asString() add.data.triple() and load.rdf() should now stop() when exceptions happen (closes #10) add.data.triple() now checks the data type given sparql.remote() now discusses bif:contains (closes #32) now uses missing() instead of is.null() for input checking (addresses #34)

Ops.Js: Ops.Js 3.0.0 For Open Phacts 1.4 Api

Ian Dunlop, Elblood, Egon Willighagen & Andrawaag
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 3.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch.

Ops.Js: Ops.Js 3.0.0 For Open Phacts 1.4 Api

Ian Dunlop, Elblood, Egon Willighagen & Andrawaag
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 3.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch.

Ops.Js: Ops.Js 4.0.0 For Open Phacts 1.4 Api

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 4.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch. New release created due to change of response from pathways by target.

Ops.Js: Ops.Js 5.0.0 For Open Phacts 1.4 Api

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 5.0.0 is compatible with the 1.4 API (and may be backwards compatible with 1.3 for most API calls). New release created due to change of response from target & compound class pharmacology.

Rrdf: Release 2.2.1

Egon Willighagen, Ryan Kohl & Carl Boettiger
This release has the following changes: adds (unit) testing with the testthat package adds a tripleCount(store) method some documentation improvements typo in package description now lists all formats in asString() add.data.triple() and load.rdf() should now stop() when exceptions happen (closes #10) add.data.triple() now checks the data type given sparql.remote() now discusses bif:contains (closes #32) now uses missing() instead of is.null() for input checking (addresses #34)

Enanomapper/Ontologies: Final Release Of Enanomapper Ontology

JKChang, Janna Hastings, Egon Willighagen, Fehrhart & Lrieswijk
v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3. What's new in eNM V4.0: 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors. Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.). As a byproduct of the development of the eNanoMapper Ontology, interaction...

Doi For Wprdf Paper

Andrawaag, Egon Willighagen, Alexander Pico & Anders Riutta
Java source for conversion of WikiPathways GPML to triples

Edamontology/Edamontology: Edam 1.19

Matúš Kalaš, Hervé Ménager, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.19 Summary of changes Various deprecations, synonyms, and rearrangements in the Operation sub-ontology Clean-up of technical artifacts: most newlines and all tab characters removed (from definitions etc.), corrections of wrong created_in-s, corrections of deprecated concepts (subset-s, relations, replacement concepts, etc.) Clean-up of the git repo Changes and additions of concepts related to electron microscopy Other updates (e.g. among Identifiers and Formats) Changes in...

Resource Types

  • Software
    66

Publication Year

  • 2018
    7
  • 2017
    22
  • 2016
    4
  • 2015
    21
  • 2014
    12

Registration Year

  • 2018
    9
  • 2017
    27
  • 2016
    2
  • 2015
    19
  • 2014
    9

Data Centers

  • ZENODO - Research. Shared.
    62
  • figshare Academic Research System
    2
  • National Cancer Institute, Bioconductor
    2