56 Works

Ambit.Js: Release 0.0.2

Egon Willighagen
Second release: extended support for the Substance API initial support for the Bundle API examples online at http://enanomapper.github.io/ambit.js/ API documentation online at http://enanomapper.github.io/ambit.js/api/

Bodr: Bodr 10

Egon Willighagen
Release notes are available from: http://chem-bla-ics.blogspot.co.uk/2013/08/the-blue-obelisk-data-repositorys-10.html

Larsgw/Citation.Js V0.3.1

Lars Willighagen & Egon Willighagen
Added Options parameter in parseInput and parseInputAsync Option for max parsing chain length Option to generate parsing chain data in _graph property Option to force type when parsing Changed Options API in Cite and Cite.async Cite(data, outputOptions) // BECOMES Cite(data, { ...parsingOptions, output: outputOptions }) Author ordinal in Wikidata props is now a property _ordinal instead of an array element Parsing invalid dates now returns input as literal date instead of an empty date-parts Refactored...

Larsgw/Citation.Js V0.3.3

Lars Willighagen & Egon Willighagen
Added A lot of Wikidata entry type mappings Support for option-less piping stdin -> stdout in the CLI Changed Greatly improve name parsing Wikidata entry type default is now book to align with, among other things, BibTeX Fixed Unknown Wikidata entry type now actually defaults to something CLI now uses the API changed in 0.3.1

Larsgw/Citation.Js V0.3.3

Lars Willighagen & Egon Willighagen
Added A lot of Wikidata entry type mappings Support for option-less piping stdin -> stdout in the CLI Changed Greatly improve name parsing Wikidata entry type default is now book to align with, among other things, BibTeX Fixed Unknown Wikidata entry type now actually defaults to something CLI now uses the API changed in 0.3.1

Larsgw/Citation.Js V0.3.2

Lars Willighagen & Egon Willighagen
Added New Wikidata field mappings (see #76) Changed BibTeX name field output now uses reverse notation Main parsing function aliases/shortcuts: Cite.normalise() -> Cite.input() Cite.normaliseAsync() -> Cite.inputAsync()

Ops4J: Release 0.0.1

Egon Willighagen, StaffanArvidsson & Peter Ansell
First release of the Java client for Open PHACTS that I created some time ago for the R package ("ropenphacts") and the Bioclipse manager. support for the 1.4 and 1.5 API

Scholia - March 2017

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia Python package, including its web service. Packaged for workshop paper March 2017.

Enanomapper/Ontologies: Final Release Of Enanomapper Ontology

JKChang, Janna Hastings, Egon Willighagen, Fehrhart & Lrieswijk
v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3. What's new in eNM V4.0: 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors. Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.). As a byproduct of the development of the eNanoMapper Ontology, interaction...

Enanomapper/Ontologies: Final Release Of Enanomapper Ontology

JKChang, Janna Hastings, Egon Willighagen, Fehrhart & Lrieswijk
v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3. What's new in eNM V4.0: 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors. Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.). As a byproduct of the development of the eNanoMapper Ontology, interaction...

Doi For Wprdf Paper

Andrawaag, Egon Willighagen, Alexander Pico & Anders Riutta
Java source for conversion of WikiPathways GPML to triples

rrdf: Release 2.2.1

Egon Willighagen, Ryan Kohl & Carl Boettiger
This release has the following changes: adds (unit) testing with the testthat package adds a tripleCount(store) method some documentation improvements typo in package description now lists all formats in asString() add.data.triple() and load.rdf() should now stop() when exceptions happen (closes #10) add.data.triple() now checks the data type given sparql.remote() now discusses bif:contains (closes #32) now uses missing() instead of is.null() for input checking (addresses #34)

ops.js: OPS.js 3.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Elblood, Egon Willighagen & Andrawaag
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 3.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch.

ops.js: OPS.js 4.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 4.0.0 is compatible with the 1.4 API (and should be backwards compatible with 1.3). Includes Disease API calls and compound/target batch. New release created due to change of response from pathways by target.

ops.js: OPS.js 5.0.0 for Open PHACTS 1.4 API

Ian Dunlop, Egon Willighagen, Elblood, Andrawaag & PANDORINO
Javascript library for requesting information from the Open PHACTS API and parsing responses. Version 5.0.0 is compatible with the 1.4 API (and may be backwards compatible with 1.3 for most API calls). New release created due to change of response from target & compound class pharmacology.

Edamontology/Edamontology: Edam 1.19

Matúš Kalaš, Hervé Ménager, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.19 Summary of changes Various deprecations, synonyms, and rearrangements in the Operation sub-ontology Clean-up of technical artifacts: most newlines and all tab characters removed (from definitions etc.), corrections of wrong created_in-s, corrections of deprecated concepts (subset-s, relations, replacement concepts, etc.) Clean-up of the git repo Changes and additions of concepts related to electron microscopy Other updates (e.g. among Identifiers and Formats) Changes in...

Rrdf: Release 2.1.2

Egon Willighagen, Richard Zijdeman, Ryan Kohl, Carl Boettiger & Davide Ceolin
This release has the following changes: updated documentation datatypes or properties now also include double, NOTATION, and QName

Rrdf: Release 2.1.2

Egon Willighagen, Richard Zijdeman, Ryan Kohl, Carl Boettiger & Davide Ceolin
This release has the following changes: updated documentation datatypes or properties now also include double, NOTATION, and QName

Edamontology/Edamontology: Edam 1.18

Hervé Ménager, Matúš Kalaš, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.18 EDAM_1.18 includes: EDAM is now available in 2 additional formats: CSV and TSV http://edamontology.org/EDAM.csv is optimised for use in spreadsheet apps (e.g. Excel) http://edamontology.org/EDAM.tsv is optimised for scripting Available for EDAM versions 1.16 and newer More details in #268 EDAM versions are now graphically browsable online in WebProtégé Free registration required Available for EDAM versions 1.16 and newer, including the unstable development...

Edamontology/Edamontology: Edam 1.19

Matúš Kalaš, Hervé Ménager, Egon Willighagen & Jon Ison
N.B.: For a version of these notes with clickable issues with tooltips, see https://github.com/edamontology/edamontology/releases/tag/1.19 Summary of changes Various deprecations, synonyms, and rearrangements in the Operation sub-ontology Clean-up of technical artifacts: most newlines and all tab characters removed (from definitions etc.), corrections of wrong created_in-s, corrections of deprecated concepts (subset-s, relations, replacement concepts, etc.) Clean-up of the git repo Changes and additions of concepts related to electron microscopy Other updates (e.g. among Identifiers and Formats) Changes in...

BridgeDbR

Christ Leemans , Egon Willighagen, Anwesha Bohler, Lars Eijssen

Rregrs: Version 0.0.5

Cristian R Munteanu, Egon Willighagen, GTsiliki, Jseoane & Carlos Fernandez-Lozano
Bug in function ScalingDS: normalization Incomplete option in function ScalingDS: standarization Bug in plot 4, function SVMRFEreg Bug in function RFRFEreg, removed abs() from resids calculation Bug in function LASSOreg, removed abs() from resids calculation

Openphacts/Ops.Js: Ops.Js 7.0.0 For Open Phacts 2.1 Api

Ian Dunlop, Egon Willighagen, Stian Soiland-Reyes, Elblood, Andrawaag, PANDORINO & Morton Fox
NodeJS based JavaScript library for requesting and parsing information from the Open PHACTS API. Version 7.0.0 is compatible with the Open PHACTS 2.1 API (and should be backwards compatible with 2.0 for most API calls).

Rregrs: Release 0.0.3

Cristian R Munteanu, GTsiliki, Egon Willighagen, Jseoane & Carlos Fernandez-Lozano
Fixed to complete the full author list

Publication Year

  • 2017
    21
  • 2016
    5
  • 2015
    21
  • 2014
    9

Data Centers

  • ZENODO - Research. Shared.
    53
  • figshare Academic Research System
    2
  • National Cancer Institute, Bioconductor
    1