72 Works

Capturing Reuse In Altmetrics

Egon Willighagen
A brief idea

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Open Science: what's next?

Egon Willighagen
Presentation given at the National Plan Open Science meeting in Delft, 2017-05-29.

Geospatial Data And Scholia

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a website that displays information about scientific works represented in Wikidata. It extracts the information via queries to the extended SPARQL endpoint Wikidata Query Service (WDQS). Scholia handles geospatial data that may be rendered on maps with the default map output format available in WDQS. We describe the use of geospatial data in Scholia, how we combine it with other data—e.g., on topics, events and affiliations—and present a set of user stories to...

Geospatial Data And Scholia

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a website that displays information about scientific works represented in Wikidata. It extracts the information via queries to the extended SPARQL endpoint Wikidata Query Service (WDQS). Scholia handles geospatial data that may be rendered on maps with the default map output format available in WDQS. We describe the use of geospatial data in Scholia, how we combine it with other data—e.g., on topics, events and affiliations—and present a set of user stories to...

Deliverable Report D1.1 Requirements Analysis And Systems Design

Barry Hardy Markus Hegi
The objective of WP 1 is, to enable the communication between the eNanoMapper project and the wider nanosafety community and to ensure the alignment of the objectives of eNanoMapper with the needs of the community. At the start of the project, an extensive requirements analysis was conducted and based on the results, an overall system design was worked out. The process was based on the methodology of Contextual Design and included five steps, each building...

Deliverable Report D2.1 Framework And Infrastructure For Ontology Development, Versioning And Dissemination

Egon Willighagen Janna Hastings
The eNanoMapper project aims to build an ontology and database to collate and describe data relevant for “safe by design” engineered nanomaterial development. Work Package 2 of this effort will develop and disseminate a comprehensive ontology for the nanosafety domain, encompassing nanomaterials and all information relating to their characterization, as well as relevant experimental paradigms, biological interactions and safety information. This deliverable report describes the technical infrastructure that has been created in order to support...

Scholia And Scientometrics With Wikidata

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a tool to handle scientific bibliographic information through Wikidata. The Scholia Web service creates on-the-fly scholarly profiles for researchers, organizations, journals, publishers, individual scholarly works, and for research topics. To collect the data, it queries the SPARQL-based Wikidata Query Service. Among several display formats available in Scholia are lists of publications for individual researchers and organizations, publications per year, employment timelines, as well as coauthor and topic networks and citation graphs. The Python...

Scholia And Scientometrics With Wikidata

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a tool to handle scientific bibliographic information through Wikidata. The Scholia Web service creates on-the-fly scholarly profiles for researchers, organizations, journals, publishers, individual scholarly works, and for research topics. To collect the data, it queries the SPARQL-based Wikidata Query Service. Among several display formats available in Scholia are lists of publications for individual researchers and organizations, publications per year, employment timelines, as well as coauthor and topic networks and citation graphs. The Python...

Identifier interoperability with the BridgeDb framework

Egon Willighagen, The BridgeDb Project & Chris Evelo
Poster presented at the BioSB 2018 and ELIXIR All Hands 2018 meetings.

Identifier interoperability with the BridgeDb framework

Egon Willighagen, The BridgeDb Project & Chris Evelo
Poster presented at the BioSB 2018 and ELIXIR All Hands 2018 meetings.

The EU NanoSafety Cluster as Linked Data visualized with Scholia

Egon Willighagen, Najko Jahn & Finn Årup Nielsen
At a recent hackathon organized by the European Research Council, GeneWiki, and others, a group of 25 researchers came together in Berlin to work on ontologically modelling research grants in Wikidata. During this meeting the EU NanoSafety Cluster was used as use case study, resulting in new linked data around the cluster. The Scholia platform was extended with a Project aspect, more than 40 projects have been added to Wikidata, and almost 500 journal articles...

The EU NanoSafety Cluster as Linked Data visualized with Scholia

Egon Willighagen, Najko Jahn & Daniel Mietchen
At a recent hackathon organized by the European Research Council, GeneWiki, and others, a group of 25 researchers came together in Berlin to work on ontologically modelling research grants in Wikidata. During this meeting the EU NanoSafety Cluster was used as use case study, resulting in new linked data around the cluster. The Scholia platform was extended with a Project aspect, more than 40 projects have been added to Wikidata, and almost 500 journal articles...

The EU NanoSafety Cluster as Linked Data visualized with Scholia

Egon Willighagen, Najko Jahn & Finn Årup Nielsen
At a recent hackathon organized by the European Research Council, GeneWiki, and others, a group of 25 researchers came together in Berlin to work on ontologically modelling research grants in Wikidata. During this meeting the EU NanoSafety Cluster was used as use case study, resulting in new linked data around the cluster. The Scholia platform was extended with a Project aspect, more than 40 projects have been added to Wikidata, and almost 500 journal articles...

How to Use Chipster for Bioinformatics Analysis of Nanomaterial-Based Omics Data

Penny Nymark, Friederike Ehrhart & Egon Willighagen
This tutorial will get you started on the basic use of the bioinformatics tool Chipster, an alternative to ArrayAnalysis.org described in other eNM tutorials. It will guide you through the import of microarray data (Affymetrix .CEL files), quality checks, normalization, pre-processing, basic statistical analyses methods and visualization of your data. Chipster is not specific to the nanosafety field, but this tutorial will be focused on the specific needs of nanotoxicological research. Chipster is an open...

How to Use Chipster for Bioinformatics Analysis of Nanomaterial-Based Omics Data

Penny Nymark, Friederike Ehrhart & Egon Willighagen
This tutorial will get you started on the basic use of the bioinformatics tool Chipster, an alternative to ArrayAnalysis.org described in other eNM tutorials. It will guide you through the import of microarray data (Affymetrix .CEL files), quality checks, normalization, pre-processing, basic statistical analyses methods and visualization of your data. Chipster is not specific to the nanosafety field, but this tutorial will be focused on the specific needs of nanotoxicological research. Chipster is an open...

A ScienceOpen collection of NanoSafety Cluster publications

Egon Willighagen, Iseult Lynch & Stephanie Dawson
Preprint describing a ScienceOpen collection of literature generated by NanoSafety Cluster projects.

A ScienceOpen collection of NanoSafety Cluster publications

Egon Willighagen, Iseult Lynch & Stephanie Dawson
Preprint describing a ScienceOpen collection of literature generated by NanoSafety Cluster projects.

A ScienceOpen collection of NanoSafety Cluster publications

Egon Willighagen, Iseult Lynch & Stephanie Dawson
Preprint describing a ScienceOpen collection of literature generated by NanoSafety Cluster projects.

Extending WikiPathways to Improve Educational Capabilities

Jacob Windsor, Egon Willighagen & Anders Riutta
This thesis represents my work at the Maastricht Science Programme, Maastricht University to create "pathway stories" for WikiPathways.

Extending WikiPathways to Improve Educational Capabilities

Jacob Windsor, Egon Willighagen & Anders Riutta
This thesis represents my work at the Maastricht Science Programme, Maastricht University to create "pathway stories" for WikiPathways.

Deliverable Report D5.6 User Application For Conformance To Reporting And Curation Standards

Jiakang Chang Linda Rieswijk
The eNanoMapper project aims to build an ontology and database to collate and describe data relevant for “safe by design” engineered nanomaterial development. Within the nanosafety domain several projects have initiated the development of standards for data reporting and curation. With this deliverable we show how the ontology can be used to test the data completeness within the eNanoMapper database, according to these approved standards, which is tested with the use of SPARQL queries. To...

Deliverable Report D2.2 Ontology Content Types And Existing Community Efforts

Gareth Owen Janna Hastings
The eNanoMapper project aims to build an ontology and database to collate and describe data relevant for “safe by design” engineered nanomaterial development. Work Package 2 of this effort will develop and disseminate a comprehensive ontology for the nanosafety domain, encompassing nanomaterials and all information relating to their characterization, as well as relevant experimental paradigms, biological interactions and safety information. This deliverable report describes the primary content areas within the nanomaterial safety domain which need...

Deliverable Report D2.3 Ontology Initial Release

Egon Willighagen Janna Hastings
The eNanoMapper project aims to build an ontology and database to collate and describe data relevant for “safe by design” engineered nanomaterial development. Work Package 2 of this effort is developing and disseminating a comprehensive ontology for the nanosafety domain, encompassing nanomaterials and all information relating to their characterization, as well as relevant experimental paradigms, biological interactions and safety information. This deliverable report describes the initial release of the ontology, including the content and organization,...

Resource Types

  • Text
    72

Publication Year

  • 2018
    11
  • 2017
    23
  • 2016
    12
  • 2015
    18
  • 2014
    3
  • 2013
    4
  • 2012
    1

Registration Year

  • 2018
    17
  • 2017
    45
  • 2016
    5
  • 2015
    3
  • 2014
    2

Data Centers

  • ZENODO - Research. Shared.
    36
  • figshare Academic Research System
    32
  • ResearchGate
    2
  • University of Cambridge
    1
  • Faculty of 1000 Research Ltd
    1