16,442 Works

Towards research infrastructures that curate scientific information: A use case in life sciences.

Markus Stocker, Manuel Prinz, Fatemeh Rostami & Tibor Kempf
Scientific information communicated in scholarly literature remains largely inaccessible to machines. The global scientific knowledge base is little more than a collection of (digital) documents. The main reason is in the fact that the document is the principal form of communication and since underlying data, software and other materials mostly remain unpublished -the fact that the scholarly article is, essentially, the only form used to communicate scientific information. Based on a use case in life...

Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database.

Lena Wiese, Chimi Wangmo, Lukas Steuernagel, Armin O. Schmitt & Mehmet Gültas
Genome analysis is a major precondition for future advances in the life sciences. The complex organization of genome data and the interactions between genomic components can often be modeled and visualized in graph structures. In this paper we propose the integration of several data sets into a graph database. We study the aptness of the database system in terms of analysis and visualization of a genome regulatory network (GRN) by running a benchmark on it....

Leaving no stone unturned: Using machine learning based approaches for information extraction from full texts of a research data warehouse.

Johanna Fiebeck, Hans Laser & Svetlana Gerbel
Data in healthcare and routine medical treatment is growing fast. Therefore and because of its variety, possible correlation within these are becoming even more complex. Popular tools for facilitating the daily routine for the clinical researchers are more often based on machine learning (ML) algorithms. Those tools might facilitate data management, data integration or even content classification. Besides commercial functionalities, there are many solutions which are developed by the user himself for his own, specific...

Linked Data based Multi-Omics Integration and Visualization for Cancer Decision Networks.

Alokkumar Jha, Yasar Khan, Qaiser Mehmood, Dietrich Rebholz-Schuhmann & Ratnesh Sahay
Visualization of Gene Expression (GE) is a challenging task since the number of genes and their associations are diffcult to predict in various set of biological studies. GE could be used to understand tissuegene- protein relationships. Currently, Heatmaps is the standard visualization technique to depict GE data. However, Heatmaps only covers the cluster of highly dense regions. It does not provide the Interaction, Functional Annotation and pooled understanding from higher to lower expression. In the...

Lung Cancer Concept Annotation from Spanish Clinical Narratives.

Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodriguez & Ernestina Menasalvas
Recent rapid increase in the generation of clinical data and rapid development of computational science make us able to extract new insights from massive datasets in healthcare industry. Oncological Electronic Health Records (EHRs) are creating rich databases for documenting patient’s history and they potentially contain a lot of patterns that can help in better management of the disease. However, these patterns are locked within free text (unstructured) portions of EHRs and consequence in limiting health...

Pulmonary Capillary Perpetual Switching Demonstration

Wiltz Wagner
Videos demonstrating pulmonary capillary flow switching.

Pulmonary Capillary Perpetual Switching Demonstration

Wiltz Wagner
Videos demonstrating pulmonary capillary flow switching.

Understanding Statistics

La Trobe EBureau
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Research and Evidence for Health Sciences

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Rigour in Qualitative Research | Associate Professor Kath Ryan

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Human Research and Ethics | Dr Deirdre Fetherstonhaugh

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Studying Substance Abuse | Dr Elly Djouma

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Qualitative Research Methods | Dr Jo Rayner

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Treatment Effects and Confidence Intervals | Dr Karl Landorf

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Psychological Impact of Sports Injuries | Dr Mandy Ruddock-Hudson

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Women's Health in Qualitative Research | Dr Pranee Liamputtong

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PICO | Dr Shane Erickson

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Searching for Evidence | Dr Shane Erickson

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Qualitative Research Methods | Dr Suzanne Hodgkin

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Issues of Bias in Wound Research | Dr William McGuiness

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Introduction to Statistics: Frequency Distributions | Prof. Geoff Cumming

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Introduction to Statistics: Descriptive Statistics | Prof. Geoff Cumming

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Introduction to Statistics: The Normal Distribution | Prof. Geoff Cumming

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Introduction to Statistics: Sampling | Prof. Geoff Cumming

La Trobe EBureau
Video content for Research and Evidence and Practice

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