104 Works

Additional file 2 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

Wei Dong, Zeyu Xia, Zehua Chai, Zhidong Qiu, Xuehong Wang, Zebin Yang, Junnan Wang, Tingrui Zhang, Qinqin Zhang & Junfei Jin
Additional file 2. The information and the statistical results for all DEPs in sEVs.

Learning Coefficient Heterogeneity over Networks: A Distributed Spanning-Tree-Based Fused-Lasso Regression

Xin Zhang, Jia Liu & Zhengyuan Zhu
Identifying the latent cluster structure based on model heterogeneity is a fundamental but challenging task arises in many machine learning applications. In this article, we study the clustered coefficient regression problem in the distributed network systems, where the data are locally collected and held by nodes. Our work aims to improve the regression estimation efficiency by aggregating the neighbors’ information while also identifying the cluster membership for nodes. To achieve efficient estimation and clustering, we...

Spatial distribution of anemophilous pollen and its correlation with the Asian summer monsoon on the southeastern Tibetan Plateau

Zhiyong Zhang, Dongmei Cheng, Dajun Xie, Zetian Liu, Jian Ni, Aizhi Sun, Yiming Cui, Zhongxin Duan & Qiqi Li
Previous studies have discovered arboreal pollen in non-forested areas on the Tibetan Plateau, which are mostly anemophilous type and regarded as a result of the Asian summer monsoon. However, the relationship between the spatial distribution of wind-pollinated pollen and monsoon has seldom been illustrated quantitatively. Here, we used 676 surface samples (647 compiled, 29 new samples) to examine the characteristics of the spatial distribution patterns of 13 anemophilous pollen taxa on the southeastern Tibetan Plateau,...

Additional file 7 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

Wei Dong, Zeyu Xia, Zehua Chai, Zhidong Qiu, Xuehong Wang, Zebin Yang, Junnan Wang, Tingrui Zhang, Qinqin Zhang & Junfei Jin
Additional file 7. The data of the clustering analysis based on the STRING database.

Hsa-miR-186-3p suppresses colon cancer progression by inhibiting KRT18/MAPK signaling pathway

Tian Xia, Zhiyong Zhang, Xin Zhang & Quanfu Li
This study aimed to determine the effect of miR-186-3p and KRT18 interaction on the biological behavior of colon cancer cells. A biotin-microRNA pull-down assay was performed to identify potential miRNAs. qRT-PCR was used to verify the KRT18 and miR-186-3p levels. In addition, Western blotting was used to detect the KRT18 protein levels. The functional connection between KRT18 and miR-186-3p was confirmed using a dual luciferase reporter assay. BrdU incorporation, MTT assay, and flow cytometry were...

Hsa-miR-186-3p suppresses colon cancer progression by inhibiting KRT18/MAPK signaling pathway

Tian Xia, Zhiyong Zhang, Xin Zhang & Quanfu Li
This study aimed to determine the effect of miR-186-3p and KRT18 interaction on the biological behavior of colon cancer cells. A biotin-microRNA pull-down assay was performed to identify potential miRNAs. qRT-PCR was used to verify the KRT18 and miR-186-3p levels. In addition, Western blotting was used to detect the KRT18 protein levels. The functional connection between KRT18 and miR-186-3p was confirmed using a dual luciferase reporter assay. BrdU incorporation, MTT assay, and flow cytometry were...

Cannabidiol attenuates methamphetamine-induced conditioned place preference in male rats and viability in PC12 cells through the Sigma1R/AKT/GSK3β/CREB signaling pathway

Liu Liu, Juan Li, Chan Wang, Yue Xu, Chi-Kwan Leung, Genmeng Yang, Shucheng Lin, Shuwei Zhang, Yi Tan, Huijie Zhang, Haowei Wang, Jianxing Liu, Ming Li & Xiaofeng Zeng
Background: Methamphetamine use is associated with several negative consequences, including neurotoxicity and greater probability of exhibiting a substance use disorder. Sigma1 receptor is involved in the neurobiological basis of several drug use disorders. Cannabidiol has received attention in the treatment of drug use disorders and neurotoxicity. Objectives: To investigate the effects of cannabidiol on methamphetamine-induced conditioned place preference (CPP) and the viability of PC12 cells. Methods: Adult male rats (n = 70) underwent methamphetamine (2...

Additional file 4 of Genome-wide identification, new classification, expression analysis and screening of drought & heat resistance related candidates in the RING zinc finger gene family of bread wheat (Triticum aestivum L.)

Yongliang Li, Pai Qin, Aolong Sun, Wenjun Xiao, Fenglin Chen, Yang He, Keyao Yu, You Li, Meng Zhang & Xinhong Guo
Additional file 4: Table S1. Detailed information of all 138 TaRING zinc finger genes identified in tomato genome.

Additional file 5 of Genome-wide identification, new classification, expression analysis and screening of drought & heat resistance related candidates in the RING zinc finger gene family of bread wheat (Triticum aestivum L.)

Yongliang Li, Pai Qin, Aolong Sun, Wenjun Xiao, Fenglin Chen, Yang He, Keyao Yu, You Li, Meng Zhang & Xinhong Guo
Additional file 5: Table S2. One-to-one orthologous relationships among T.aestivum and T.aestivum, A.thaliana, A. tauschii, B. distachyon, H. vulgare, rice, S.italica and Zea mays, respectively.

Additional file 11 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 11. Summary statistics for the differential expression analysis. DE: differentially expressed. LS: lateral septum, MPOA: medial preoptic area, NAc: nucleus accumbens.

Additional file 2 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 2. Table S2: Adjuvant treatment information.

Additional file 1 of Relationship between sarcopenia/paravertebral muscles and the incidence of vertebral refractures following percutaneous kyphoplasty: a retrospective study

Qi Chen, Chenyang Lei, Tingxiao Zhao, Zhanqiu Dai, Jun Zhang, Yongming Jin & Chen Xia
Additional file 1.

Additional file 7 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 7. Detailed results from the linear regressions between all behaviors scored during the parental behaviors test, testing for an interaction of Group (Mothers/Fathers/Paternal).

Additional file 9 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 9. Functional enrichment across structures and phenotypes. For each pairwise comparison, the functional enrichments in gene ontologies of the biological processes (BP), cellular components (CC), and molecular functions (MF) categories as well as in pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG) were tested for the differentially expressed genes up- or down-regulated (UP, and DOWN, respectively). The labels of pairwise comparisons were coded in two letters: the first one represents the...

Additional file 1 of Identification and validation of cuproptosis-related LncRNA signatures as a novel prognostic model for head and neck squamous cell cancer

Xiajing Liu, Wenwei Cheng, Heqing Li & Yexun Song
Additional file 1: Table S1. The list of 19 CRGs.

Additional file 3 of Identification and validation of cuproptosis-related LncRNA signatures as a novel prognostic model for head and neck squamous cell cancer

Xiajing Liu, Wenwei Cheng, Heqing Li & Yexun Song
Additional file 3: Table S3. No significant differences were observed in clinicopathological characteristics among training group, test group and overall group.

Additional file 8 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
SCG scaffolds and their sequencing coverage for FC8-9.

Additional file 9 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
SCG scaffolds, their origins and sequencing coverage. Number in brackets, sequencing coverage across a whole scaffold.

Additional file 9 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
SCG scaffolds, their origins and sequencing coverage. Number in brackets, sequencing coverage across a whole scaffold.

Additional file 1 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
Coordinates for nucleotide-based alignments between scaffolds assembled by unmapped reads and F1RT metagenome scaffolds (F1RT) reassembled by metaSPAdes.

Additional file 3 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
Coordinates for nucleotide-based alignments between scaffolds from the FC2 isolate genome and scaffolds from the F1RT metagenome assembled by metaSPAdes.

Additional file 4 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
Coordinates for nucleotide-based alignments between scaffolds from the FC3 isolate genome and scaffolds from the F1RT metagenome assembled by metaSPAdes.

Additional file 7 of Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking

Ziyao Wu, Yuxiao Wang, Jiaqi Zeng & Yizhuang Zhou
Sequencing coverage for scaffolds uniquely assembled by metaSPAdes.

Additional file 2 of Specific triacylglycerol, diacylglycerol, and lyso-phosphatidylcholine species for the prediction of type 2 diabetes: a ~ 16-year prospective study in Chinese

Junda Zhong, Chloe Y. Y. Cheung, Xiuli Su, Chi-Ho Lee, Yi Ru, Carol H. Y. Fong, Yan Liu, Cynthia K. Y. Cheung, Karen S. L. Lam, Zongwei Cai & Aimin Xu
Additional file 2: Table S1. Stepwise model selection coefficients and Wald-Z tests. Table S2. List of measured lipid species. Table S3. Weighted gene co-expression network analysis module components. Table S4. Boruta analysis result.

1_Main Dataset_Ren 2020+Shuangchenglong;2_Subsidiary Data matrix_CEA_2019+Shuangchenglong;3_Subsidiary Data matrix_M_2019+Shuangchenglong;4_Subsidiary Data matrix_GEA_2020+Shuangchenglong from New macronarian from the Middle Jurassic of Chongqing, China: phylogenetic and biogeographic implications for neosauropod dinosaur evolution

Hui Dai, Chao Tan, Qingyu Ma, Ning Li, Haidong Yu, Can Xiong, Zhaoying Wei, Ping Wang, Jian Yi, Guangbiao Wei, Hailu You & Xinxin Ren
Main Dataset;Subsidiary Data matrix 2;Subsidiary Data matrix 3;Subsidiary Data matrix 4

Registration Year

  • 2022
    104

Resource Types

  • Dataset
    104

Affiliations

  • Guilin Medical University
    104
  • Second Military Medical University
    52
  • Shanghai Jiao Tong University
    50
  • Huazhong University of Science and Technology
    47
  • Capital Medical University
    32
  • Inner Mongolia Agricultural University
    31
  • Sun Yat-sen University
    30
  • Southern Medical University
    30
  • Peking University
    30
  • Anhui Medical University
    29