4 Works

Data from: Spatial dynamics and mixing of bluefin tuna in the Atlantic Ocean and Mediterranean Sea revealed using next generation sequencing

Gregory Neils Puncher, Alessia Cariani, Gregory E. Maes, Jeroen Van Houdt, Koen Herten, Rita Cannas, Naiara Rodriguez-Ezpeleta, Aitor Albaina, M. Andone Estonba, Molly Lutcavage, Alex Hanke, Jay Rooker, James S. Franks, Joseph M. Quattro, Gualtiero Basilone, Igaratza Fraile, Urtzi Laconcha, Nicolas Goñi, Ai Kimoto, A. David Macías, Francisco Alemany, Simeon Deguara, Salem W. Zgozi, Fulvio Garibaldi, Isik K. Oray … & Fausto Tinti
The Atlantic bluefin tuna is a highly migratory species emblematic of the challenges associated with shared fisheries management. In an effort to resolve the species’ stock dynamics, a genome-wide search for spatially informative single nucleotide polymorphisms (SNPs) was undertaken, by way of sequencing reduced representation libraries. An allele frequency approach to SNP discovery was used, combining the data of 555 larvae and young-of-the-year (LYOY) into pools representing major geographical areas and mapping against a newly...

Data from: Determining diet from faeces: selection of metabarcoding primers for the insectivore Pyrenean desman (Galemys pyrenaicus)

Amaiur Esnaola, Aitor Arrizabalaga-Escudero, Jorge Gonzalez-Esteban, Arturo Elosegi & Joxerra Aihartza
Molecular techniques allow non-invasive dietary studies from faeces, providing an invaluable tool to unveil ecological requirements of endangered or elusive species. They contribute to progress on important issues such as genomics, population genetics, dietary studies or reproductive analyses, essential knowledge for conservation biology. Nevertheless, these techniques require general methods to be tailored to the specific research objectives, as well as to substrate- and species-specific constraints. In this pilot study we test a range of available...

Data from: Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding

Aitor Arrizabalaga-Escudero, Elizabeth L. Clare, Egoitz Salsamendi, Antton Alberdi, Inazio Garin, Joxerra Aihartza & Urtzi Goiti
Niche partitioning through foraging is a mechanism likely involved in facilitating the coexistence of ecologically similar and co-occurring animal species by separating their use of resources. Yet, this mechanism is not well understood in flying insectivorous animals. This is particularly true of bats, where many ecologically similar or cryptic species coexist. The detailed analysis of the foraging niche in sympatric, cryptic sibling species provides an excellent framework to disentangle the role of specific niche factors...

Data from: Development, characterization and comparisons of targeted and non-targeted metabolomics methods

Anton Ribbenstedt, Haizea Ziarrusta & Jonathan P. Benskin
The potential of a metabolomics method to detect statistically significant perturbations in the metabolome of an organism is enhanced by excellent analytical precision, unequivocal identification, and broad metabolomic coverage. While the former two metrics are usually associated with targeted metabolomics and the latter with non-targeted metabolomics, a systematic comparison of the performance of both approaches has not yet been carried out. The present work reports on the development and performance evaluation of separate targeted and...

Registration Year

  • 2018
    4

Resource Types

  • Dataset
    4

Affiliations

  • University of the Basque Country
    4
  • University of Cagliari
    1
  • University of Massachusetts Amherst
    1
  • Ghent University
    1
  • Spanish Institute of Oceanography
    1
  • Texas A&M University at Galveston
    1
  • University of Genoa
    1
  • University of Bologna
    1
  • Texas A&M University
    1
  • Portuguese Sea and Atmosphere Institute
    1