12 Works

Additional file 2 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 2. Table S2: Some samples with the extracted columns and their labels.

Additional file 6 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 6. Table S6: Equivalent and comparable attributes in SRA and MG-RAST.

Additional file 7 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 7. Table S7: Packages and their versions used for the WebApp.

Additional file 4 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 4. Table S4: Marine ‘MarMDB’ attributes groups and their respective values.

Additional file 2 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 2. Table S2: Some samples with the extracted columns and their labels.

Additional file 3 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 3. Table S3: Attributes chosen to represent different synonyms from SRAdb’s ‘sample_attribute’.

Additional file 4 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 4. Table S4: Marine ‘MarMDB’ attributes groups and their respective values.

Additional file 7 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 7. Table S7: Packages and their versions used for the WebApp.

Additional file 6 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 6. Table S6: Equivalent and comparable attributes in SRA and MG-RAST.

Additional file 5 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 5. Table S5: Complete list of attributes in MarineMetagenomeDB. The ‘MarMDB attribute category’ column indicates the manually created category of each attribute.

Additional file 3 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 3. Table S3: Attributes chosen to represent different synonyms from SRAdb’s ‘sample_attribute’.

Additional file 5 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 5. Table S5: Complete list of attributes in MarineMetagenomeDB. The ‘MarMDB attribute category’ column indicates the manually created category of each attribute.

Registration Year

  • 2022
    12

Resource Types

  • Dataset
    12

Affiliations

  • Helmholtz Centre for Environmental Research
    12
  • Federal University of Technology – Paraná
    12
  • University of Aveiro
    12
  • University of Algarve
    12
  • University of Lisbon
    12
  • Universidade de São Paulo
    12
  • Leipzig University
    12
  • Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences
    12