29 Works

Additional file 8 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 8. PrimedSherlock V1. This file contains the entire PrimedSherlock Python script.

Additional file 3 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 3. Primer and crRNA output of PrimedSherlock. Each virus or serotype is provided as a separate page, listing primer pairs and corresponding optimum crRNA.

Additional file 5 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 5. Average fluorescence values of two technical replicates from CRISPR-Cas12 Ultra assays. Measurements were collected every 30 seconds for two hours.

RETRACTED ARTICLE: MicroRNA-3194-3p inhibits metastasis and epithelial-mesenchymal transition of hepatocellular carcinoma by decreasing Wnt/β-catenin signaling through targeting BCL9

Bowen Yao, Yazhao Li, Liang Wang, Tianxiang Chen, Yongshen Niu, Qingguang Liu & Zhikui Liu
We, the Editors and Publisher of the journal Artificial Cells, Nanomedicine, and Biotechnology, have retracted the following article: Bowen Yao, Yazhao Li, Liang Wang, Tianxiang Chen, Yongshen Niu, Qingguang Liu & Zhikui Liu (2019) MicroRNA-3194-3p inhibits metastasis and epithelial-mesenchymal transition of hepatocellular carcinoma by decreasing Wnt/β-catenin signaling through targeting BCL9. Artificial Cells, Nanomedicine, and Biotechnology, 47:1, 3885–3895, DOI: 10.1080/21691401.2019.1670190 Since publication, concerns have been raised about the integrity of the data in the article. In...

Additional file 2 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 2. PrimedRPA-generated file listing primers used as input for PrimedSherlock. Primer combinations, primer dimer formation likelihood, and off-target affinity are shown.

Additional file 6 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 6. Installation guide for PrimedSherlock. Describes the Python packages required and the procedure for running PrimedSherlock.

Additional file 7 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 7. Batch script used to run PrimedSherlock from command line.

Additional file 8 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 8. PrimedSherlock V1. This file contains the entire PrimedSherlock Python script.

Deciphering the lncRNA and mRNA profiles of Min pig backfat after acute cold stress

Dongjie Zhang, Wentao Wang, Zhongqiu Li, Liang Wang & Di Liu
Cold stress can promote fat metabolism and reduce fat deposition. The present study compared differentially expressed (DE) lncRNAs and mRNAs in the subcutaneous back fat of Min pigs subjected to 24 h acute cold stress. Transcriptome sequencing was used to identify DE lncRNAs and mRNAs. A lncRNA mRNA co expression network was constructed using the confirmed lncRNAs. GO and KEGG analyses were performed to investigate the biological processes involved in the response to acute cold...

sj-csv-4-tct-10.1177_15330338221123634 - Supplemental material for Ixazomib Combined With Autologous Stem Cell Transplantation for POEMS Syndrome: A Case Report and Meta-Analysis

Ji Ma, Xiaoyue Wang, Hui Lu, Zhihao Liang & Liang Wang
Supplemental material, sj-csv-4-tct-10.1177_15330338221123634 for Ixazomib Combined With Autologous Stem Cell Transplantation for POEMS Syndrome: A Case Report and Meta-Analysis by Ji Ma, Xiaoyue Wang, Hui Lu, Zhihao Liang and Liang Wang in Technology in Cancer Research & Treatment

Data from: Whiskers provide time-series of toxic and essential trace elements, Se:Hg molar ratios, and stable isotope values of an apex Antarctic predator, the leopard seal

Patrick Charapata, Casey Clark, Nathan Miller, Sarah Kienle, Daniel Costa, Michael Goebel, Heather Gunn, Emily Sperou, Shane Kanatous, Daniel Crocker, Renato Borras-Chavez & Stephen Trumble
In an era of rapid environmental change and increasing human presence, researchers need efficient tools for tracking contaminants to monitor the health of Antarctic flora and fauna. Here, we examined the utility of leopard seal whiskers as a biomonitoring tool that reconstructs time-series of significant ecological and physiological biomarkers. Leopard seals (Hydrurga leptonyx) are a sentinel species in the Western Antarctic Peninsula due to their apex predator status and top-down effects on several Antarctic species....

Research methods and Comparative examination of pinniped craniofacial musculature and its role in aquatic feeding

Sarah Kienle
Secondarily aquatic tetrapods have many unique morphological adaptations for life underwater compared to their terrestrial counterparts. A key innovation during the land-to-water transition was feeding. Pinnipeds, a clade of air-breathing marine carnivorans that includes seals, sea lions, and walruses, have evolved multiple strategies for aquatic feeding (e.g., biting, suction feeding). Numerous studies have examined pinniped skull and dental specializations for underwater feeding. However, data on the pinniped craniofacial musculoskeletal system and its role in aquatic...

Additional file 6 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 6. Installation guide for PrimedSherlock. Describes the Python packages required and the procedure for running PrimedSherlock.

Additional file 3 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 3. Primer and crRNA output of PrimedSherlock. Each virus or serotype is provided as a separate page, listing primer pairs and corresponding optimum crRNA.

sj-csv-4-tct-10.1177_15330338221123634 - Supplemental material for Ixazomib Combined With Autologous Stem Cell Transplantation for POEMS Syndrome: A Case Report and Meta-Analysis

Ji Ma, Xiaoyue Wang, Hui Lu, Zhihao Liang & Liang Wang
Supplemental material, sj-csv-4-tct-10.1177_15330338221123634 for Ixazomib Combined With Autologous Stem Cell Transplantation for POEMS Syndrome: A Case Report and Meta-Analysis by Ji Ma, Xiaoyue Wang, Hui Lu, Zhihao Liang and Liang Wang in Technology in Cancer Research & Treatment

Additional file 1 of N6-methyladenosine-mediated SH3BP5-AS1 upregulation promotes GEM chemoresistance in pancreatic cancer by activating the Wnt signaling pathway

Chengjie Lin, Yan Wang, Yihong Dong, Shihui Lai, Liang Wang, Shangeng Weng & Xiang Zhang
Additional file 1. Supplementary figures and materials.

Additional file 1 of N6-methyladenosine-mediated SH3BP5-AS1 upregulation promotes GEM chemoresistance in pancreatic cancer by activating the Wnt signaling pathway

Chengjie Lin, Yan Wang, Yihong Dong, Shihui Lai, Liang Wang, Shangeng Weng & Xiang Zhang
Additional file 1. Supplementary figures and materials.

Adverse health effects and stresses on offspring due to paternal exposure to harmful substances

Jiaqi Sun, Miaomiao Teng, Fengchang Wu, Xiaoli Zhao, Yunxia Li, Lihui Zhao, Wentian Zhao, Keng Po Lai, Kenneth Mei Yee Leung & John P. Giesy
Recent epidemiological investigations report that environmental factors, such as exposure to harmful substances and stress related to unhealthy lifestyles, can result in health risks to organisms. The involvement of paternal exposure to chemicals and stresses, which leads to a negative impact on physiological responses and developmental processes in descendants, has drawn scientific attention. In this comprehensive review, we systematically describe different exposure sources of intergenerational and transgenerational health effects, including smoking, atmospheric fine particulate matter,...

Additional file 4 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 4. Average fluorescence values of two technical replicates from CRISPR-Cas12 V3 assays. Measurements were collected every minute for two hours.

Additional file 4 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 4. Average fluorescence values of two technical replicates from CRISPR-Cas12 V3 assays. Measurements were collected every minute for two hours.

Additional file 5 of PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs

James G. Mann & R. Jason Pitts
Additional file 5. Average fluorescence values of two technical replicates from CRISPR-Cas12 Ultra assays. Measurements were collected every 30 seconds for two hours.

Texas Gulf Coastal Plain, USA

Broadband seismographs were deployed to study the transition from continental to oceanic crust, in conjunction with a marine seismic component that included ocean bottom seismographs.

Diazotrophy modulates cyanobacteria stoichiometry through functional traits that determine bloom magnitude and toxin production

Nicole Wagner, Felicia Osburn, Raegyn Taylor, Jeffrey Back, Kevin Chambliss, Bryan Brooks & Thad Scott
Harmful cyanobacterial blooms are an increasing threat to water quality. The interactions between two eco-physiological functional traits of cyanobacteria, diazotrophy (nitrogen (N)-fixation) and N-rich cyanotoxin synthesis, have never been examined in a stoichiometric explicit manner. We explored how a gradient of resource N:phosphorus (P) affects the biomass, N, P stoichiometry, light-harvesting pigments, and cylindrospermopsin production in a N-fixing cyanobacterium, Aphanizomenon. Low N:P Aphanizomenon cultures produced the same biomass as populations grown in high N:P cultures....

Adverse health effects and stresses on offspring due to paternal exposure to harmful substances

Jiaqi Sun, Miaomiao Teng, Fengchang Wu, Xiaoli Zhao, Yunxia Li, Lihui Zhao, Wentian Zhao, Keng Po Lai, Kenneth Mei Yee Leung & John P. Giesy
Recent epidemiological investigations report that environmental factors, such as exposure to harmful substances and stress related to unhealthy lifestyles, can result in health risks to organisms. The involvement of paternal exposure to chemicals and stresses, which leads to a negative impact on physiological responses and developmental processes in descendants, has drawn scientific attention. In this comprehensive review, we systematically describe different exposure sources of intergenerational and transgenerational health effects, including smoking, atmospheric fine particulate matter,...

Deciphering the lncRNA and mRNA profiles of Min pig backfat after acute cold stress

Dongjie Zhang, Wentao Wang, Zhongqiu Li, Liang Wang & Di Liu
Cold stress can promote fat metabolism and reduce fat deposition. The present study compared differentially expressed (DE) lncRNAs and mRNAs in the subcutaneous back fat of Min pigs subjected to 24 h acute cold stress. Transcriptome sequencing was used to identify DE lncRNAs and mRNAs. A lncRNA mRNA co expression network was constructed using the confirmed lncRNAs. GO and KEGG analyses were performed to investigate the biological processes involved in the response to acute cold...

Registration Year

  • 2022
    29

Resource Types

  • Dataset
    29

Affiliations

  • Baylor University
    29
  • Fudan University
    11
  • Tianjin Medical University General Hospital
    9
  • Sun Yat-sen University
    9
  • Huazhong University of Science and Technology
    9
  • Heilongjiang Provincial Academy of Agricultural Sciences
    9
  • Beijing Tongren Hospital
    9
  • Shenzhen University
    9
  • Moffitt Cancer Center
    9
  • Chaohu Hospital of Anhui Medical University
    9