938 Works

RETRACTED ARTICLE: Hsa_circ_0101432 promotes the development of hepatocellular carcinoma (HCC) by adsorbing miR-1258 and miR-622

Haibo Zou, Xiangang Xu, Lanyun Luo, Yu Zhang, Le Luo, Yutong Yao, Guangming Xiang, Xiaolun Huang & Guan Wang
Hsa_circ_0101432 promotes the development of hepatocellular carcinoma (HCC) by adsorbing miR-1258 and miR-622 We, the Editors and Publisher of the journal Cell Cycle, have retracted the following article: Haibo Zou, Xiangang Xu, Lanyun Luo, Yu Zhang, Le Luo, Yutong Yao, Guangming Xiang, Xiaolun Huang, and Guan Wang. Hsa_circ_0101432 promotes the development of hepatocellular carcinoma (HCC) by adsorbing miR-1258 and miR-622. Cell Cycle. 2019;18(19):2398-2413. doi: 10.1080/15384101.2019.1618120. Since publication, significant concerns have been raised about the integrity...

Data involved in this article from A game theoretical model for the stimulation of public cooperation in environmental collaborative governance

Yinhai Fang, Matjaž Perc & Hui Zhang
This file provides the data for figures in this paper, as well as the code that generates the data.

Additional file 1 of Comparative chloroplast genome analyses of Amomum: insights into evolutionary history and species identification

Lu Gong, Xiaoxia Ding, Wan Guan, Danchun Zhang, Jing Zhang, Junqi Bai, Wen Xu, Juan Huang, Xiaohui Qiu, Xiasheng Zheng, Danyan Zhang, Shijie Li, Zhihai Huang & He Su
Additional file 1: Table S2.. Genbank accession numbers of DNA barcodes. Table S4. Results for one-vs-one calculation of Ka/Ks generated by KaKs_Calculator.

Diagnostic signature and immune characteristic of aging-related genes from placentas in Preeclampsia

Xiufang Wang, Andong He, Ka Cheuk Yip, Xiaoting Liu & Ruiman Li
Preeclampsia (PE) is a serious pregnancy syndrome. Advanced maternal age (≥ 35 years old) is one of the major risk factors of PE and placental aging is considered to be related to this disease. However, the mechanisms underlying these phenomena remain obscured. Gene expression profiles of PE and non-PE placental samples were curated from the GSE75010 dataset. A diagnostic model was constructed and immune characteristics of PE subtypes were estimated. A total of 58 aging-related...

Additional file 14 of Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9

Yang Zhang, Fei He, Yanning Zhang, Qian Dai, Qintong Li, Jing Nan, Ruidong Miao & Bo Cheng
Additional file 14 Supplementary Table 6. Target distribution analyses for sgRNAs used in Fig. 4.

Additional file 15 of A comprehensive pan-cancer analysis of necroptosis molecules in four gynecologic cancers

Jianfeng Zheng, Xintong Cai, Yu Zhang, Huihui Wang, Li Liu, Fengling Tang, Linying Liu & Yang Sun
Additional file 15: Supplementary Table 3. The results of Univariate Cox regression analysis for pan-cancer.

Pyroptosis regulators exert crucial functions in prognosis, progression and immune microenvironment of pancreatic adenocarcinoma: a bioinformatic and in vitro research

Zhenghai Bai, Fangshi Xu, Xiaodan Feng, Yuan Wu, Junhua Lv, Yu Shi & Honghong Pei
Pyroptosis is an inflammatory programmed cell death, showing potentials to be a novel anti-cancer approach. However, the roles of pyroptosis-related (PR) genes (PRGs) in pancreatic adenocarcinoma (PAAD) remain elusive. In the present study, we constructed a novel PR risk signature through the lasso regression analysis. The risk signature was greatly conducive to PAAD prognostic assessment. PR risk score was identified as an independent prognostic factor and could distinguish the prognostic differences of most clinical subgroups....

Additional file 5 of Exogenous ABA and IAA modulate physiological and hormonal adaptation strategies in Cleistocalyx operculatus and Syzygium jambos under long-term waterlogging conditions

El-Hadji Malick Cisse, Juan Zhang, Da-Dong Li, Ling-Feng Miao, Li-Yan Yin & Fan Yang
Additional file 5.

Additional file 3 of mTORC1-c-Myc pathway rewires methionine metabolism for HCC progression through suppressing SIRT4 mediated ADP ribosylation of MAT2A

Liang Zhao, Huizhao Su, Xiaomeng Liu, Hongquan Wang, Yukuan Feng, Yan Wang, Haiqiang Chen, Luo Dai, Shihui Lai, Siqi Xu, Chong Li, Jihui Hao & Bo Tang
Additional file 3: Table S2. The changes of metabolite levels upon methionine restriction in livers of HCC mouce models.

Additional file 5 of Integrated analysis to identify the AC005154.6/hsa-miR-29c-3p/CCNL2 axis as a novel prognostic biomarker associated with immune infiltration in prostate cancer

Qinyu Li, Bingliang Chen, Guoda Song, Kai Zeng, Xin Chen, Jianping Miao, Xianglin Yuan, Jihong Liu, Zhihua Wang & Bo Liu
Additional file 5. Thirteen ceRNA networks correlated with patient survival.

Additional file 5 of Integrated analysis to identify the AC005154.6/hsa-miR-29c-3p/CCNL2 axis as a novel prognostic biomarker associated with immune infiltration in prostate cancer

Qinyu Li, Bingliang Chen, Guoda Song, Kai Zeng, Xin Chen, Jianping Miao, Xianglin Yuan, Jihong Liu, Zhihua Wang & Bo Liu
Additional file 5. Thirteen ceRNA networks correlated with patient survival.

Additional file 8 of Integrated analysis to identify the AC005154.6/hsa-miR-29c-3p/CCNL2 axis as a novel prognostic biomarker associated with immune infiltration in prostate cancer

Qinyu Li, Bingliang Chen, Guoda Song, Kai Zeng, Xin Chen, Jianping Miao, Xianglin Yuan, Jihong Liu, Zhihua Wang & Bo Liu
Additional file 8. Twenty-nine small molecules identified from CMap.

Additional file 7 of Integrated analysis to identify the AC005154.6/hsa-miR-29c-3p/CCNL2 axis as a novel prognostic biomarker associated with immune infiltration in prostate cancer

Qinyu Li, Bingliang Chen, Guoda Song, Kai Zeng, Xin Chen, Jianping Miao, Xianglin Yuan, Jihong Liu, Zhihua Wang & Bo Liu
Additional file 7. Drugs significantly associated with the expression of CCNL2.

Additional file 6 of MAPK8IP2 is a potential prognostic biomarker and promote tumor progression in prostate cancer

Zhenhao Zeng, Wenrui He, Yi Jiang, Hao Jiang, Xiaofeng Cheng, Wen Deng, Xiaochen Zhou, Cheng Zhang & Gongxian Wang
Additional file 6 Table S1. Browse interactions in tabular form.

Additional file 11 of Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9

Yang Zhang, Fei He, Yanning Zhang, Qian Dai, Qintong Li, Jing Nan, Ruidong Miao & Bo Cheng
Additional file 11 Supplementary Table 3. High frequency ZnFs in clusters 3–5 (additional information for Fig. 1C).

METTL3-mediated long non-coding RNA MIR99AHG methylation targets miR-4660 to promote bone marrow mesenchymal stem cell osteogenic differentiation

Lintao Li, Beiyue Wang, Xing Zhou, Hao Ding, Chang Sun, Yicun Wang, Fan Zhang & Jianning Zhao
Whether long non-coding RNA Mir-99a-Let-7c Cluster Host Gene (LncRNA MIR99AHG) is involved in osteoporosis (OP) remains vague, so we hereby center on its implication. Old C57BL/6J mice were injected with the silencing lentivirus of MIR99AHG and subjected to microCT analysis and immunohistochemistry on osteogenic cells. The osteogenic differentiation of bone marrow mesenchymal stem cells (BMSCs) with or without transfection was determined by alkaline phosphatase (ALP) and Alizarin Red S staining. Total N(6)-methyladenosine (m6A) on the...

Sprouty4 is epigenetically upregulated in human colorectal cancer

Alexei J. Stuckel, Shuai Zeng, Zhen Lyu, Wei Zhang, Xu Zhang, Urszula Dougherty, Reba Mustafi, Tripti Khare, Qiong Zhang, Trupti Joshi, Marc Bissonnette & Sharad Khare
Sprouty4 (SPRY4) has been frequently reported as a tumor suppressor and is therefore downregulated in various cancers. For the first time, we report that SPRY4 is epigenetically upregulated in colorectal cancer (CRC). In this study, we explored DNA methylation and hydroxymethylation levels of SPRY4 in CRC cells and patient samples and correlated these findings with mRNA and protein expression levels. Three loci within the promoter region of SPRY4 were evaluated for 5mC levels in CRC...

Cytopenias following anti-CD19 chimeric antigen receptor (CAR) T cell therapy: a systematic analysis for contributing factors

Yuan Xia, Jue Zhang, Jing Li, Lina Zhang, Jianyong Li, Lei Fan & Lijuan Chen
Cytopenia is one of the most common adverse events following the CAR-T cell infusion, affecting the quality of life and potentially leading to life-threatening bleeding and infection. This study aimed to systematically review the cytopenias following anti-CD19 CAR-T therapy and further analyse the contributing factors. Databases including PubMed, MEDLINE, Embase and Cochrane were systematically searched on 8 May 2022. A random-effect meta-analysis was used to estimate the incidence of cytopenia, and subgroup analyses were applied...

Cytopenias following anti-CD19 chimeric antigen receptor (CAR) T cell therapy: a systematic analysis for contributing factors

Yuan Xia, Jue Zhang, Jing Li, Lina Zhang, Jianyong Li, Lei Fan & Lijuan Chen
Cytopenia is one of the most common adverse events following the CAR-T cell infusion, affecting the quality of life and potentially leading to life-threatening bleeding and infection. This study aimed to systematically review the cytopenias following anti-CD19 CAR-T therapy and further analyse the contributing factors. Databases including PubMed, MEDLINE, Embase and Cochrane were systematically searched on 8 May 2022. A random-effect meta-analysis was used to estimate the incidence of cytopenia, and subgroup analyses were applied...

Additional file 10 of Grapevine (Vitis vinifera) responses to salt stress and alkali stress: transcriptional and metabolic profiling

Xu Lu, Lei Ma, CongCong Zhang, HaoKai Yan, JinYu Bao, MeiShuang Gong, WenHui Wang, Sheng Li, ShaoYing Ma & BaiHong Chen
Additional file 10: Table S9. The DAMs involved in Chl biosynthesis and photosynthesis.

Additional file 4 of Grapevine (Vitis vinifera) responses to salt stress and alkali stress: transcriptional and metabolic profiling

Xu Lu, Lei Ma, CongCong Zhang, HaoKai Yan, JinYu Bao, MeiShuang Gong, WenHui Wang, Sheng Li, ShaoYing Ma & BaiHong Chen
Additional file 4: Table S3. The DEGs involved in the ‘MAPK signaling pathway-plant’ pathway.

Additional file 8 of Grapevine (Vitis vinifera) responses to salt stress and alkali stress: transcriptional and metabolic profiling

Xu Lu, Lei Ma, CongCong Zhang, HaoKai Yan, JinYu Bao, MeiShuang Gong, WenHui Wang, Sheng Li, ShaoYing Ma & BaiHong Chen
Additional file 8: Table S7. The DEGs involved in the ‘Photosynthesis’ pathway.

Additional file 8 of Grapevine (Vitis vinifera) responses to salt stress and alkali stress: transcriptional and metabolic profiling

Xu Lu, Lei Ma, CongCong Zhang, HaoKai Yan, JinYu Bao, MeiShuang Gong, WenHui Wang, Sheng Li, ShaoYing Ma & BaiHong Chen
Additional file 8: Table S7. The DEGs involved in the ‘Photosynthesis’ pathway.

Additional file 17 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

Xueqiang Wang, Yan Zhao, Conghui Jiang, Libing Wang, Lei Chen, Fengmei Li, Yanhong Zhang, Yinghua Pan & Tianzhen Zhang
Additional file 17 Table S16. Genome-wide detection and functional annotation of selective sweep regions in the irrigated GJ rice.

Additional file 19 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

Xueqiang Wang, Yan Zhao, Conghui Jiang, Libing Wang, Lei Chen, Fengmei Li, Yanhong Zhang, Yinghua Pan & Tianzhen Zhang
Additional file 19 Table S18. Genome-wide detection of highly differentiated loci between DW and UP-XI.

Registration Year

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Affiliations

  • Sun Yat-sen University
    938
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    671
  • Zhejiang University
    576
  • Shanghai Jiao Tong University
    538
  • Fudan University
    521
  • Sichuan University
    516
  • Capital Medical University
    502
  • Huazhong University of Science and Technology
    454
  • Chinese Academy of Sciences
    454
  • University of Chinese Academy of Sciences
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