190 Works
Polygonum cuspidatum inhibits the growth of osteosarcoma cells via impeding Akt/ERK/EGFR signaling pathways
Jun Zhao, Boyu Pan, Xinglu Zhou, Chunnuan Wu, Fengcheng Hao, Jie Zhang & Liren Liu
Osteosarcoma (OS), the most prevalent bone malignancy, mainly affects children and adolescents. Despite recent advances in multimodal therapy, the overall survival rate for OS patients remains poor. Chinese herb medicine (CHM) is an alternative therapeutic option for multifaceted diseases such as malignant tumors. For centuries in China, polygonum cuspidatum, a classic CHM, has been used to treat several diseases, nevertheless, the mechanisms underlying its therapeutic effects have not been fully elucidated. Through network pharmacology and...
A review of building detection from very high resolution optical remote sensing images
Jiayi Li, Xin Huang, Lilin Tu, Tao Zhang & Leiguang Wang
Building detection from very high resolution (VHR) optical remote sensing images, which is an essential but challenging task in remote sensing, has attracted increased attention in recent years. However, despite the many methods that have been developed, an in-depth review of the recent literature on building extraction from VHR optical images is still lacking. In this article, we present a comprehensive review of the recent advances (since 2000) in this field. In total, we survey...
Management guideline for the off-label use of medicine in China (2021)
Wei Zuo, Yajia Sun, Rongji Liu, Liping Du, Nan Yang, Wenjuan Sun, Ping Wang, Xiaowan Tang, Yunlan Liu, Yuanyuan Ma, Min Meng, Ruobing Lei, Xuelian Yan, Hua Peng, Qing Chang, Hui Pan, Bo Zhang, Yaolong Chen & Shuyang Zhang
Off-label drug use embodies a thorough clinical diagnosis and evaluation of treatment needs and should not be confused with unreasonable drug use, but it also faces potential risks with drug safety and legal issues. We first established a guideline working group. Following the guideline development process recommended by the World Health Organization Handbook and the Chinese Medical Association, the key questions were determined through literature searches of PubMed, CNKI (Chinese National Knowledge Infrastructure) and other...
Management guideline for the off-label use of medicine in China (2021)
Wei Zuo, Yajia Sun, Rongji Liu, Liping Du, Nan Yang, Wenjuan Sun, Ping Wang, Xiaowan Tang, Yunlan Liu, Yuanyuan Ma, Min Meng, Ruobing Lei, Xuelian Yan, Hua Peng, Qing Chang, Hui Pan, Bo Zhang, Yaolong Chen & Shuyang Zhang
Off-label drug use embodies a thorough clinical diagnosis and evaluation of treatment needs and should not be confused with unreasonable drug use, but it also faces potential risks with drug safety and legal issues. We first established a guideline working group. Following the guideline development process recommended by the World Health Organization Handbook and the Chinese Medical Association, the key questions were determined through literature searches of PubMed, CNKI (Chinese National Knowledge Infrastructure) and other...
Knockdown of GSG2 inhibits the development and progression of non-small cell lung cancer in vitro and in vivo
Fan Zhang, Bin Qiu, Ying Ji, Hao Zhang, Peng Song, Nan Sun, Liang Zhao, Fang Lv, Lixia Yin, Yibo Gao, Qi Xue, Shugeng Gao & Jie He
Lung cancer has been recognized as the most common malignant neoplasm of the respiratory system with extremely high morbidity, among which non-small cell lung cancer (NSCLC) accounts for the majority. Many published literatures have revealed the roles of GSG2 in the progression of ovarian cancer, bladder cancer and breast cancer. However, there were no reports on the relationship between GSG2 and NSCLC. Herein, GSG2 was identified as a potential tumor promoter in NSCLC development, whose...
Additional file 1 of Genetic liability to obesity and peptic ulcer disease: a Mendelian randomization study
Zhoubin Li, Heng Chen & Ting Chen
Additional file 1. Tabel S1. Proxies for SNPs not found in the outcome dataset (Forward MR); Tabel S2. Characteristics of the genetic variants associated with body mass index; Tabel S3. Characteristics of the genetic variants associated with waist-to-hip ratio; Tabel S4. Characteristics of the genetic variants associated with body mass index in replication analyses; Tabel S5. Characteristics of the genetic variants associated with waist-to-hip ratio in replication analyses; Tabel S6. Proxies for SNPs not found...
Additional file 1 of Genome-wide identification of key enzyme-encoding genes and the catalytic roles of two 2-oxoglutarate-dependent dioxygenase involved in flavonoid biosynthesis in Cannabis sativa L.
Xuewen Zhu, Yaolei Mi, Xiangxiao Meng, Yiming Zhang, Weiqiang Chen, Xue Cao, Huihua Wan, Wei Yang, Jun Li, Sifan Wang, Zhichao Xu, Atia Tul Wahab, Shilin Chen & Wei Sun
Additional file 1: Table S1. Physical characteristics of the major enzyme-encoding genes of flavonoid metabolic pathway in C. sativa.
Additional file 4 of Genome-wide identification of key enzyme-encoding genes and the catalytic roles of two 2-oxoglutarate-dependent dioxygenase involved in flavonoid biosynthesis in Cannabis sativa L.
Xuewen Zhu, Yaolei Mi, Xiangxiao Meng, Yiming Zhang, Weiqiang Chen, Xue Cao, Huihua Wan, Wei Yang, Jun Li, Sifan Wang, Zhichao Xu, Atia Tul Wahab, Shilin Chen & Wei Sun
Additional file 4:Table S3. Secondary structure predication of the CsFLS proteins in C. sativa.
Additional file 3 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish
Shanshan Liu, Ting Chen, Binghao Chen, Yijun Liu, Xiaohe Lu & Jiali Li
Additional file 2. Supplementary Table S1. Tissue gradient dehydration procedure before paraffin section.
Additional file 4 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish
Shanshan Liu, Ting Chen, Binghao Chen, Yijun Liu, Xiaohe Lu & Jiali Li
Additional file 3. Supplementary Table S2. Hematoxylin-Eosin (HE) staining procedure.
Additional file 5 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish
Shanshan Liu, Ting Chen, Binghao Chen, Yijun Liu, Xiaohe Lu & Jiali Li
Additional file 4. Supplementary Table S3. Information of 165 apoptosis pathway related genes in GSEA analysis.
Additional file 7 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish
Shanshan Liu, Ting Chen, Binghao Chen, Yijun Liu, Xiaohe Lu & Jiali Li
Additional file 6. Supplementary Table S5. Gene information of KEGG analysis.
Borrelia burgdorferi strain and host sex influence pathogen prevalence and abundance in the tissues of a laboratory rodent host
Christopher Zinck, Prasobh Thampy, Ryan Rego, Dustin Brisson, Nicholas Ogden & Maarten Voordouw
Experimental infections with different pathogen strains give insight into pathogen life history traits. The purpose of our study was to compare variation in tissue infection prevalence and spirochete abundance among strains of B. burgdorferi in a rodent host (Mus musculus, C3H/HeJ). Male and female mice were experimentally infected via tick bite with one of 12 strains. Ear tissue biopsies were taken at days 29, 59, and 89 post-infection (PI), and 7 tissues were collected at...
Additional file 1 of Plasma metabolomics provides new insights into the relationship between metabolites and outcomes and left ventricular remodeling of coronary artery disease
Qian Zhu, Min Qin, Zixian Wang, Yonglin Wu, Xiaoping Chen, Chen Liu, Qilin Ma, Yibin Liu, Weihua Lai, Hui Chen, Jingjing Cai, Yemao Liu, Fang Lei, Bin Zhang, Shuyao Zhang, Guodong He, Hanping Li, Mingliang Zhang, Hui Zheng, Jiyan Chen, Min Huang & Shilong Zhong
Additional file 1: Table S1. Baseline characteristics on death and MACE risks. Table S2. Baseline characteristics on LVEF and LVMI. Table S3. Relationship between metabolites and death risk. Table S4. Relationship between metabolites and MACE risk. Table S5. Multivariate Cox proportional hazards model for clinical outcomes. Table S6. Spearman correlation analysis between clinical factors and those metabolites associated with death risk. Table S7. Spearman correlation analysis between clinical factors and those metabolites associated with death...
Additional file 1 of Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer
Ji-Won Huh, Min Jung Kim, Jaesik Kim, Hyeon Gwon Lee, Seung-Bum Ryoo, Ja-Lok Ku, Seung-Yong Jeong, Kyu Joo Park, Dokyoon Kim, Jihyun F. Kim & Ji Won Park
Additional file 1: Table S1. Clinical data of patients with primary CRC.
Crime in Philadelphia: Bayesian Clustering with Particle Optimization
Cecilia Balocchi, Sameer K. Deshpande, Edward I. George & Shane T. Jensen
Accurate estimation of the change in crime over time is a critical first step toward better understanding of public safety in large urban environments. Bayesian hierarchical modeling is a natural way to study spatial variation in urban crime dynamics at the neighborhood level, since it facilitates principled “sharing of information” between spatially adjacent neighborhoods. Typically, however, cities contain many physical and social boundaries that may manifest as spatial discontinuities in crime patterns. In this situation,...
Additional file 2 of Comprehensive analysis of alternative polyadenylation regulators concerning CD276 and immune infiltration in bladder cancer
Ming Xiong, Wencheng Li, Longwang Wang, Liang Chen, Zhaohui Chen, Chengcheng Wei, Futian Zhang, Jiawei Chen, Gallina Kazobinka, Jun Zhao & Teng Hou
Additional file 2: Supplementary Table 1. The results of the GSEA.
Additional file 2 of Comprehensive analysis of alternative polyadenylation regulators concerning CD276 and immune infiltration in bladder cancer
Ming Xiong, Wencheng Li, Longwang Wang, Liang Chen, Zhaohui Chen, Chengcheng Wei, Futian Zhang, Jiawei Chen, Gallina Kazobinka, Jun Zhao & Teng Hou
Additional file 2: Supplementary Table 1. The results of the GSEA.
Additional file 5 of Exogenous ABA and IAA modulate physiological and hormonal adaptation strategies in Cleistocalyx operculatus and Syzygium jambos under long-term waterlogging conditions
El-Hadji Malick Cisse, Juan Zhang, Da-Dong Li, Ling-Feng Miao, Li-Yan Yin & Fan Yang
Additional file 5.
Additional file 1 of Effect of low dose aspirin application during pregnancy on fetal congenital anomalies
Si Sun, HongYang Qian, Congcong Li, Qiaohong Wang & Aimin Zhao
Additional file 1. The “raw datasets” file includes raw clinical data of all patients included in this study. As shown in the raw datasets, each patient has the detailed clinical data including age, body mass index (BMI), number of previous early miscarriage, number of previous late miscarriage, number of previous still birth, number of previous spontaneous abortions, history of preterm birth, history of fetal congenital anomalies, nulliparas, twin birth and etc. Also, the low dose...
Additional file 1 of Effect of low dose aspirin application during pregnancy on fetal congenital anomalies
Si Sun, HongYang Qian, Congcong Li, Qiaohong Wang & Aimin Zhao
Additional file 1. The “raw datasets” file includes raw clinical data of all patients included in this study. As shown in the raw datasets, each patient has the detailed clinical data including age, body mass index (BMI), number of previous early miscarriage, number of previous late miscarriage, number of previous still birth, number of previous spontaneous abortions, history of preterm birth, history of fetal congenital anomalies, nulliparas, twin birth and etc. Also, the low dose...
Additional file 4 of RBCK1 is an endogenous inhibitor for triple negative breast cancer via hippo/YAP axis
Zhongbo Li, Peng Su, Yinlu Ding, Honglei Gao, Huijie Yang, Xin Li, Xiao Yang, Yan Xia, Chenmiao Zhang, Mingxi Fu, Dehai Wang, Ye Zhang, Shu Zhuo, Jian Zhu & Ting Zhuang
Additional file 3. Digital raw data.
A Network Pharmacological Approach to Explore the Mechanisms of TongXieYaoFang in Inflammatory Bowel Disease
Wenli You, Mingjuan Li, Aiting Di, Xin Li, Hairui Gao, Cuixia Qiao, Bin Yu & Gang Zhao
Abstract Inflammatory bowel disease (IBD) is a chronic inflammatory disorder of the intestine, demonstrating an increasing incidence every year. TongXieYaoFang (TXYF) has been used widely in China as a complementary therapy to relieve the symptoms of IBD for hundreds of years. In the present research, a network pharmacology-based approach was used to systematically explore the intrinsic mechanisms of TXYF in IBD at the molecular level. Network pharmacology-based methods, which mainly included database mining, screening of...
Additional file 1 of Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance
Carter Merenstein, Frederic D. Bushman & Ronald G. Collman
Additional file 1. Datasheet.
Additional file 1 of Targeting ERRα promotes cytotoxic effects against acute myeloid leukemia through suppressing mitochondrial oxidative phosphorylation
Wonhyoung Seo, Seungyeul Yoo, Yi Zhong, Sang-Hee Lee, Soo-Yeon Woo, Hee-Seon Choi, Minho Won, Taylor Roh, Sang Min Jeon, Kyeong Tae Kim, Prashanta Silwal, Min Joung Lee, Jun Young Heo, Nathan Lawlor, Sup Kim, Dongjun Lee, Jin-Man Kim, Ik-Chan Song, Jun Zhu & Eun-Kyeong Jo
Additional file 1. Supplementary Data 1. ERRα target genes in CCLE AML cell lines.
Affiliations
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University of Pennsylvania190
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Chinese Academy of Medical Sciences & Peking Union Medical College103
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Shanghai Jiao Tong University85
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Zhejiang University83
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Southern Medical University81
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Huazhong University of Science and Technology79
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Nanjing Medical University78
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Sun Yat-sen University77
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Fudan University76
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Sichuan University74