426 Works

Cenozoic rifting and inversion of Beibuwan Basin and its linkage with the strike-slip movement along the Ailao Shan-Red River Shear Zone

Yanjun Cheng, Zhiping Wu, Jie Zhang, Yuqing Liu, Zhengkai Wang & Yining Dai
The Cenozoic Beibuwan Basin is located along the eastern margin of the Ailao Shan Red River Shear Zone (ASRRSZ). The rifting and inversion processes of this basin provide important clues to the mechanism by which extrusion tectonics drive continental rifting and inversion development. However, the rifting and inversion of this basin remain ambiguous. Here, we employ seismic data, information about the time and displacement of faulting, syn-rift fault and isopach maps to analyse the Cenozoic...

Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer

Runzhi Huang, Zixuan Zheng, Shuyuan Xian, Jiayao Zhang, Jingyi Jia, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Zongqiang Huang, Tong Meng & Jie Zhang
Bladder cancer (BLCA), originating from the epithelium of the urinary bladder, was the second most common malignancy in the urinary system with a high metastasis rate and poor post-metastasis prognosis. Alternative splicing events (ASEs) were regarded as important markers of tumor progression and prognosis, however, their roles in bladder cancer bone metastasis have not been recognized. In this study, we constructed a predictive model based on ASEs and explored the molecular mechanism of ASEs in...

Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer

Runzhi Huang, Zixuan Zheng, Shuyuan Xian, Jiayao Zhang, Jingyi Jia, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Zongqiang Huang, Tong Meng & Jie Zhang
Bladder cancer (BLCA), originating from the epithelium of the urinary bladder, was the second most common malignancy in the urinary system with a high metastasis rate and poor post-metastasis prognosis. Alternative splicing events (ASEs) were regarded as important markers of tumor progression and prognosis, however, their roles in bladder cancer bone metastasis have not been recognized. In this study, we constructed a predictive model based on ASEs and explored the molecular mechanism of ASEs in...

Circular RNA ZFR accelerates non-small cell lung cancer progression by acting as a miR-101-3p sponge to enhance CUL4B expression

Haifeng Zhang, Xiaolong Wang, Baoli Hu, Feng Zhang, Haitao Wei & Li Li
Non-small-cell lung carcinoma (NSCLC) is the most common type of lung cancer. Circular RNA ZFR (circZFR) is an identified circular RNA (circRNA) that is correlated with cancer progression. However, the role of circZFR in NSCLC remains unknown. In the present study, we aimed to investigate the function of circZFR in NSCLC and the underlying mechanism. The expression patterns of circZFR were determined using qRT-PCR in NSCLC samples and cell lines. The subcellular distribution of circZFR...

Circular RNA ZFR accelerates non-small cell lung cancer progression by acting as a miR-101-3p sponge to enhance CUL4B expression

Haifeng Zhang, Xiaolong Wang, Baoli Hu, Feng Zhang, Haitao Wei & Li Li
Non-small-cell lung carcinoma (NSCLC) is the most common type of lung cancer. Circular RNA ZFR (circZFR) is an identified circular RNA (circRNA) that is correlated with cancer progression. However, the role of circZFR in NSCLC remains unknown. In the present study, we aimed to investigate the function of circZFR in NSCLC and the underlying mechanism. The expression patterns of circZFR were determined using qRT-PCR in NSCLC samples and cell lines. The subcellular distribution of circZFR...

Long noncoding RNA MAGI1-IT1 promoted invasion and metastasis of epithelial ovarian cancer via the miR-200a/ZEB axis

Hao Gao, Xiaofeng Li, Guangxi Zhan, Yong Zhu, Jing Yu, Jiapo Wang, Li Li, Weimin Wu, Na Liu & Xiaoqing Guo
Epithelial ovarian cancer (EOC) is the most lethal gynecologic malignancy, and its vulnerability to metastasis contributes to the poor outcomes of EOC patients. Long noncoding RNAs (lncRNAs) were verified to play a pivotal role in EOC metastasis. However, the potential role of lncRNA membrane-associated guanylate kinase inverted 1 (MAGI1) intronic transcript (MAGI1-IT1) in EOC is largely unknown. In this study, the function and mechanisms of MAGI1-IT1 in EOC metastasis were explored profoundly. First, MAGI1-IT1 expression...

Analysis of microplastics released from plastic take-out food containers based on thermal properties and morphology study

Jia-Ling Hu, Yipin Duan, Huai-Ning Zhong, Qin-Bao Lin, Tianlong Zhang, Chuang-Chuang Zhao, Sheng Chen, Ben Dong, Dan Li, Jing Wang, Ming-Zhen Mo, Jie Chen & Jian-Guo Zheng
Plastic take-out food containers may release microplastics (MPs) into food and pose a potential risk to food safety and human health. Here, after being subjected to hot water treatment, MPs released from three types of plastic food containers (polypropylene, PP; polyethylene, PE; expanded polystyrene, EPS) were identified by micro-Raman spectroscopy. The results showed that the size of released MPs ranged from 0.8–38 μm and over 96% MPs were smaller than 10 μm. Various MPs concentrations...

Tyrosine kinase inhibitors-associated interstitial lung disease used in non-small cell lung cancer: a pharmacovigilance analysis based on the FDA adverse event reporting system database

Jing Zhang, Ting Qiu, Yiting Zhou, Shengjie Wu & Enguo Chen
Interstitial lung disease (ILD) was a relatively common cause of drug-induced mortality. However, the safety profile of the whole TKIs induced ILD was largely unknown. The reported cases of ILD associated with TKIs were downloaded from the FDA adverse event reporting system (FAERS) database between 1 January 2004 and 30 April 2022 to detect ILD signals by disproportionality analysis. Furthermore, the fatality rate and time to onset (TTO) of various TKIs were also calculated. The...

Additional file 3 of CRISPR-dCas13-tracing reveals transcriptional memory and limited mRNA export in developing zebrafish embryos

Youkui Huang, Bao-Qing Gao, Quan Meng, Liang-Zhong Yang, Xu-Kai Ma, Hao Wu, Yu-Hang Pan, Li Yang, Dong Li & Ling-Ling Chen
Additional file 3: Table S2. The labeling ability of all examined dCas13 proteins with modified gRNAs.

Additional file 5 of CRISPR-dCas13-tracing reveals transcriptional memory and limited mRNA export in developing zebrafish embryos

Youkui Huang, Bao-Qing Gao, Quan Meng, Liang-Zhong Yang, Xu-Kai Ma, Hao Wu, Yu-Hang Pan, Li Yang, Dong Li & Ling-Ling Chen
Additional file 5: Table S4. Expression of 15 transcripts containing at least eight repeated sequences at different development time (Related to Fig. 4b).

Additional file 5 of CRISPR-dCas13-tracing reveals transcriptional memory and limited mRNA export in developing zebrafish embryos

Youkui Huang, Bao-Qing Gao, Quan Meng, Liang-Zhong Yang, Xu-Kai Ma, Hao Wu, Yu-Hang Pan, Li Yang, Dong Li & Ling-Ling Chen
Additional file 5: Table S4. Expression of 15 transcripts containing at least eight repeated sequences at different development time (Related to Fig. 4b).

Additional file 4 of Identification of key module and hub genes in pulpitis using weighted gene co-expression network analysis

Denghui Zhang, Chen Zheng, Tianer Zhu, Fan Yang & Yiqun Zhou
Additional file 4. Detailed process of hub gene detection.

Additional file 5 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

Li Li, Boxin Lv, Kaiyou Zang, Yue Jiang, Chaofan Wang, Yanfang Wang, Kangyu Wang, Mingzhu Zhao, Ping Chen, Jun Lei, Yi Wang & Meiping Zhang
Additional file 5: Table S1. The HD-Zip genes of the outgroup species used in the phylogenetic tree of the PgHDZ gene family.

Additional file 7 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

Li Li, Boxin Lv, Kaiyou Zang, Yue Jiang, Chaofan Wang, Yanfang Wang, Kangyu Wang, Mingzhu Zhao, Ping Chen, Jun Lei, Yi Wang & Meiping Zhang
Additional file 7: Table S3. The nucleotide sequences of the PgHDZ gene transcripts identified from ginseng cv. Damaya and their subfamilies.

Additional file 3 of Nanopore sequencing for detecting reciprocal translocation carrier status in preimplantation genetic testing

Qiuping Xia, Shenglan Li, Taoli Ding, Zhen Liu, Jiaqi Liu, Yanping Li, Huimin Zhu & Zhongyuan Yao
Additional file 3.

Additional file 2 of The alteration of N6-methyladenosine (m6A) modification at the transcriptome-wide level in response of heat stress in bovine mammary epithelial cells

Ying Qi, Yiming Zhang, Jing Zhang, Jing Wang & Qiuling Li
Additional file 2. m6A peaks related genes in H and NH groups.

Additional file 1 of Genetic screening of a Chinese cohort of children with hearing loss using a next-generation sequencing panel

Jing Ma, Xiuli Ma, Ken Lin, Rui Huang, Xianyun Bi, Cheng Ming, Li Li, Xia Li, Guo Li, Liping Zhao, Tao Yang, Yingqin Gao & Tiesong Zhang
Additional file 1: Table S1. The panel containing 518 genes associated with deafness.

Additional file 4 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

Yang Zou, Wen-Bin Zheng, Hany M. Elsheikha, Jun-Jun He, Yi-Xin Lu, Shuai Wang, Aijiang Guo & Xing-Quan Zhu
Additional file 4: Table S3. Immune- or inflammation-related GO terms of the differentially expressed mRNAs at three stages post Toxocara canis infection.

Additional file 2 of Chondroitin sulfate alleviates osteoporosis caused by calcium deficiency by regulating lipid metabolism

Tianshu Liu, Hai Yu, Shuai Wang, Huimin Li, Xinyiran Du & Xiaodong He
Additional file 2: Table S2. The differential metabolites of fecal metabolomics between the N group and the C group. The differential metabolites of fecal metabolomics between the C group and the Ca group. The differential metabolites of fecal metabolomics between the C group and the CS group. The differential metabolites of fecal metabolomics between the CS group and the Ca group.

Additional file 3 of Gonadal transcriptomes reveal sex-biased expression genes associated with sex determination and differentiation in red-tail catfish (Hemibagrus wyckioides)

Wen-Yu Wei, Yi Gong, Xin-Fen Guo, Min Liu, Yu-Lin Zhou, Zhi Li, Li Zhou, Zhong-Wei Wang & Jian-Fang Gui
Additional file 3: Table S3. The list of DEGs identified in M30dph-vs-F30dph.

Additional file 9 of Gonadal transcriptomes reveal sex-biased expression genes associated with sex determination and differentiation in red-tail catfish (Hemibagrus wyckioides)

Wen-Yu Wei, Yi Gong, Xin-Fen Guo, Min Liu, Yu-Lin Zhou, Zhi Li, Li Zhou, Zhong-Wei Wang & Jian-Fang Gui
Additional file 9: Table S5. The real p-values of RT-qPCR.

Additional file 3 of Can biomarkers identified from the uterine fluid transcriptome be used to establish a noninvasive endometrial receptivity prediction tool? A proof-of-concept study

Aihua He, Hong Wu, Yangyun Zou, Cheng Wan, Jing Zhao, Qiong Zhang, Nenghui Liu, Donge Liu, Yumei Li, Jing Fu, Hui Li, Xi Huang, Tianli Yang, Chunxu Hu, Zhaojuan Hou, Yue Sun, Xin Dong, Jian Wu, Sijia Lu & Yanping Li
Additional file 3: Table S2. Functional enrichment of uterine fluid DEGs.

Additional file 4 of Potential clinical utility of liquid biopsy in early-stage non-small cell lung cancer

Haifeng Shen, Yichen Jin, Heng Zhao, Manqi Wu, Kai Zhang, Zihan Wei, Xin Wang, Ziyang Wang, Yun Li, Fan Yang, Jun Wang & Kezhong Chen
Additional file 4: Table S1. Summary of concentration of cfDNA in eligible cohorts. Table S2. Predictive value analysis.

Additional file 1 of Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing

Junjie Hu, Lele Zhang, Haoran Xia, Yilv Yan, Xinsheng Zhu, Fenghuan Sun, Liangdong Sun, Shuangyi Li, Dianke Li, Jin Wang, Ya Han, Jing Zhang, Dongliang Bian, Huansha Yu, Yan Chen, Pengyu Fan, Qiang Ma, Gening Jiang, Chenfei Wang & Peng Zhang
Additional file 1: Table S1. Clinical information of tumor and blood samples used in the study.

Registration Year

  • 2023
    235
  • 2022
    155
  • 2021
    21
  • 2020
    5
  • 2019
    5
  • 2018
    5

Resource Types

  • Dataset
    426

Affiliations

  • Lanzhou Veterinary Research Institute
    426
  • Chinese Academy of Sciences
    324
  • Zhejiang University
    304
  • Sun Yat-sen University
    297
  • Capital Medical University
    289
  • Jilin University
    288
  • Tongji University
    276
  • Central South University
    271
  • Fudan University
    270
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    270