731 Works

Additional file 3 of Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses

Nadeem Shaikh, Alice Mazzagatti, Simone De Angelis, Sarah C. Johnson, Bjorn Bakker, Diana C. J. Spierings, René Wardenaar, Eleni Maniati, Jun Wang, Michael A. Boemo, Floris Foijer & Sarah E. McClelland
Additional file 3. Replication Timing factor derived from RPE1 single cells after treatment with DMSO or aphidicolin.

Additional file 4 of Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses

Nadeem Shaikh, Alice Mazzagatti, Simone De Angelis, Sarah C. Johnson, Bjorn Bakker, Diana C. J. Spierings, René Wardenaar, Eleni Maniati, Jun Wang, Michael A. Boemo, Floris Foijer & Sarah E. McClelland
Additional file 4. RNAseq data for BJ and RPE1 cells treated with DMSO or aphidicolin.

Additional file 5 of Dissecting super-enhancer driven transcriptional dependencies reveals novel therapeutic strategies and targets for group 3 subtype medulloblastoma

Meng Li, Yujie Han, Chaochen Wang, Wenfeng Kang, Wenyan Jiang, Lei Zhang & Yujie Tang
Additional file 5: Supplementary Table S5

CIED-Activity data, 2015-2018

Ling Tang, Min Jia, Junai Yang, Ling Li, Xin Bo & Zhifu Mi
The Chinese Industrial Emissions Database (CIED) provides inventory of particulate matter (PM), SO2 and NOX from Chinese industries from 2015 to 2018, based on direct measurements from China’s continuous emission monitoring systems (CEMS) network. This document provides activity data for China’s different industrial emission sources.

Vocabulary characteristics in CIs (Luo et al., 2022)

Jianfen Luo, Lei Xu, Min Wang, Dianzhao Xie, Jinming Li, Xianqi Liu, Shuman He, Linda Spencer, Gwyneth Rost & Ling-Yu Guo
Purpose: The aim of this study is to evaluate whether Mandarin-speaking children with cochlear implants (CIs) demonstrated early lexical composition similar to their hearing peers who were at the same vocabulary level and the extent to which children with CIs were sensitive to linguistic and conceptual properties when developing early lexicon. Method: Participants were 77 Mandarin-speaking children with CIs who received CIs before 30 months of age. Their expressive vocabulary was documented using the Infant...

Additional file 14 of A comprehensive pan-cancer analysis of necroptosis molecules in four gynecologic cancers

Jianfeng Zheng, Xintong Cai, Yu Zhang, Huihui Wang, Li Liu, Fengling Tang, Linying Liu & Yang Sun
Additional file 14: Supplementary Table 2. The results of expression differences for pan-cancer analysis.

Additional file 14 of A comprehensive pan-cancer analysis of necroptosis molecules in four gynecologic cancers

Jianfeng Zheng, Xintong Cai, Yu Zhang, Huihui Wang, Li Liu, Fengling Tang, Linying Liu & Yang Sun
Additional file 14: Supplementary Table 2. The results of expression differences for pan-cancer analysis.

The complete chloroplast genome of Primula odontocalyx, a heterostylous species

Yunqi Liu, Li Zhang, Shubao Wang, Rui Li & Yuan Huang
Primula odontocalyx (Franch.) Pax (1905) is a perennial herb of the genus Primula in Primulaceae with heterostyly and ornamental value. Here, the chloroplast genome of P. odontocalyx was sequenced, assembled, and annotated. The complete chloroplast genome was a closed-circular molecule of 151,738 bp in length, containing a large single-copy region (LSC) of 83,817 bp, a small single-copy region (SSC) of 17,529 bp, and two inverted repeat (IR) regions of 25,196 bp. A total of 115...

Mantle magmatism, metamorphism and anatexis: evidence from geochemistry and zircon U–Pb-Hf isotopes of Paleoproterozoic S-type granites, Khondalite Belt of the North China Craton

Qiang Shi, Zhong-Yuan Xu, M Santosh, Ding Ding, Zhong-Hai Zhao, Chen Li, Xin Gao, Wenjie Ma, Yan Xu, Hui-Xuan Li & Chengran Yue
S-type granites constitute an important component of the Paleoproterozoic Khondalite Belt in the North China Craton. Here we present results from petrography, geochemistry and isotope geochronology on the porphyritic garnet-bearing syenogranite and garnet-bearing monzogranite samples in the Jining-Liangcheng area. The geochemical characteristics of these samples indicate formation through partial anatexis of the khondalites, with heat and material input from mantle-derived magma. Geochemical similarities between the porphyritic garnet-bearing syenogranite, garnet-bearing monzogranite, and metapelitic gneiss suggest their...

Toward Optimal Fingerprinting in Detection and Attribution of Changes in Climate Extremes

Zhuo Wang, Yujing Jiang, Hui Wan, Jun Yan & Xuebin Zhang
Abstract–Detection and attribution of climate change plays a central role in establishing the causal relationship between the observed changes in the climate and their possible causes. Optimal fingerprinting has been widely used as a standard method for detection and attribution analysis for mean climate conditions, but there has been no satisfactory analog for climate extremes. Here, we turn an intuitive concept, which incorporates the expected climate responses to external forcings into the location parameters of...

Additional file 25 of Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma

Yexin Tong, Mingjun Sun, Lingli Chen, Yunzhi Wang, Yan Li, Lingling Li, Xuan Zhang, Yumeng Cai, Jingbo Qie, Yanrui Pang, Ziyan Xu, Jiangyan Zhao, Xiaolei Zhang, Yang Liu, Sha Tian, Zhaoyu Qin, Jinwen Feng, Fan Zhang, Jiajun Zhu, Yifan Xu, Wenhui Lou, Yuan Ji, Jianyuan Zhao, Fuchu He, Yingyong Hou … & Chen Ding
Additional file 25: Table S3. Integrated Multi-omics Features in Tumor Tissues Compared with NATs of the PDAC. Table S3A Matrix of 7,055 protein groups and their relative intensities in at least 1/6 of the samples (226 tumors and 220 NATs). Table S3B 19,992 mRNA and their ratio of tumors/NATs (54 tumors and 51 NATs). Table S3C A list of protein identified both in protein and mRNA level. Table S3D A list of phosphosites used for...

SNP of Opisthopappus species

Hao Zhang
The VCF file for article DOI: 10.22541 / au/v1 part of 166870495.51723721.

Genetic analysis of the mitochondrial DNA control region in Tai–Kadai-speaking Dong population in southwest China

Zheng Ren, Yuhang Feng, Hongling Zhang, Qiyan Wang, Meiqing Yang, Yubo Liu, Cuiyun Le, Jie Wang & Jiang Huang
Dong people in Southwest China are officially recognised as an ethnic group, but there has been a lack of population genetic research on this group, especially based on mitochondrial DNA data. To study the sequences and haplogroups of the mitochondrial DNA control region in a typical Dong population, and to provide help for the construction of a forensic mitochondrial DNA analysis reference database in East Asia. The sequences of the mitochondrial DNA control region were...

Additional file 5 of m6A RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis

Ling Wang, Haiyan Zhuang, Wenwen Fan, Xia Zhang, Haihong Dong, Hongxing Yang & Jungnam Cho
Additional file 5: Table S4. Summary of sequencing data generated in this study.

Additional file 4 of Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

Shuang Liu, Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu, Daifeng Wang & Mark Gerstein
Additional file 4. trans-eQTLs with permutation FDR<0.25 in DLPFC.

Additional file 3 of Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

Shuang Liu, Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu, Daifeng Wang & Mark Gerstein
Additional file 3. trans-eGenes with gene level FDR<0.25 in DLPFC.

Additional file 2 of Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

Shuang Liu, Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu, Daifeng Wang & Mark Gerstein
Additional file 2. trans-eQTLs with pooled FDR<0.05 in DLPFC.

Additional file 1 of Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex

Shuang Liu, Hyejung Won, Declan Clarke, Nana Matoba, Saniya Khullar, Yudi Mu, Daifeng Wang & Mark Gerstein
Additional file 1. Candidate trans-eQTLs with pooled FDR<0.25 in DLPFC.

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu, Hong Zhang, Yuexin Zhang, Yapeng Fan, Jing Wang, Waqar Afzal Malik, Cun Rui, Mingge Han, Xuke Lu, Xiugui Chen, Junjuan Wang, Delong Wang, Shuai Wang, Chao Chen, Lixue Guo, Lanjie Zhao & Wuwei Ye
Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stresses.

Additional file 1 of Analysis of risk factors related to extremely and very preterm birth: a retrospective study

Xiaohong Ji, Chengqian Wu, Min Chen, Lili Wu, Ting Li, Zhijing Miao, Yan Lv & Hongjuan Ding
Supplementary Material 1

sj-rar-2-cre-10.1177_02692155221136108 - Supplemental material for Myofascial release for the treatment of pain and dysfunction in patients with chronic mechanical neck pain: Systematic review and meta-analysis of randomised controlled trials

Yaorui Guo, Xiuying Lv, Yu Zhou, Zhijun Li, Huiping She, Li Bai & Jing Bao
Supplemental material, sj-rar-2-cre-10.1177_02692155221136108 for Myofascial release for the treatment of pain and dysfunction in patients with chronic mechanical neck pain: Systematic review and meta-analysis of randomised controlled trials by Yaorui Guo, Xiuying Lv, Yu Zhou, Zhijun Li, Huiping She, Li Bai and Jing Bao in Clinical Rehabilitation

Additional file 1 of Integrated metabolomic and transcriptomic analyses of the synergistic effect of polymyxin–rifampicin combination against Pseudomonas aeruginosa

Mohd Hafidz Mahamad Maifiah, Yan Zhu, Brian T. Tsuji, Darren J. Creek, Tony Velkov & Jian Li
Additional file 1: Table S1. Significantly changed metabolites at 15 min. Table S2. Significantly changed metabolites at 1 h. Table S3. Significantly changed metabolites at 4 h. Table S4. Significantly changed metabolites at 24 h. Table S5. DEGs induced by polymyxin B at 1 h. Table S6. DEGs induced by rifampicin B at 1 h. Table S7. DEGs induced by the combination of polymyxin B and rifampicin at 1 h. Table S8. DEGs induced by...

Additional file 6 of Candidate genes screening based on phenotypic observation and transcriptome analysis for double flower of Prunus mume

Huanhuan Zhu, Yan Shi, Junwei Zhang, Manzhu Bao & Jie Zhang
Additional file 6.

RDD2022 - The multi-national Road Damage Dataset released through CRDDC'2022

D Arya, Hiroya Maeda, Yoshihide Sekimoto, Hiroshi Omata, Sanjay Kumar Ghosh, Durga Toshniwal, Madhavendra Sharma, Van Vung Pham, Jingtao Zhong, Muneer Al-Hammadi, Mamoona Birkhez Shami, Du Nguyen, Hanglin Cheng, Jing Zhang, Alex Klein-Paste, Helge Mork, Frank Lindseth, Toshikazu Seto, Alexander Mraz & Takehiro Kashiyama
Description The Road Damage Dataset, RDD2022, is released as a part of the Crowdsensing-based Road Damage Detection Challenge (CRDDC'2022), an IEEE BigData Cup. It comprises 47,420 road images from six countries, Japan, India, the Czech Republic, Norway, the United States, and China. The images have been annotated with more than 55,000 instances of road damage. Four types of road damage, namely longitudinal cracks, transverse cracks, alligator cracks, and potholes, are captured in the dataset....

Additional file 10 of Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9

Yang Zhang, Fei He, Yanning Zhang, Qian Dai, Qintong Li, Jing Nan, Ruidong Miao & Bo Cheng
Additional file 10 Supplementary Table 2. The identity and frequency of all types of fingerprints in mouse KRAB-ZFP-associated ZnFs (information for Supplementary Fig. 3).

Registration Year

  • 2022
    731

Resource Types

  • Dataset
    731

Affiliations

  • Jilin University
    731
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    519
  • Shanghai Jiao Tong University
    451
  • Sichuan University
    431
  • Zhejiang University
    418
  • Fudan University
    413
  • Chinese Academy of Sciences
    369
  • Sun Yat-sen University
    362
  • University of Chinese Academy of Sciences
    344
  • Peking University
    329