42 Works

Data from: Calling in sick: impacts of fever on intra-urban human mobility

T. Alex Perkins, Valerie A. Paz-Soldan, Steven T. Stoddard, Amy C. Morrison, Brett M. Forshey, Kanya C. Long, Eric S. Halsey, Tadeusz J. Kochel, John P. Elder, Uriel Kitron, Thomas W. Scott & Gonzalo M. Vazquez-Prokopec
Pathogens inflict a wide variety of disease manifestations on their hosts, yet the impacts of disease on the behaviour of infected hosts are rarely studied empirically and are seldom accounted for in mathematical models of transmission dynamics. We explored the potential impacts of one of the most common disease manifestations, fever, on a key determinant of pathogen transmission, host mobility, in residents of the Amazonian city of Iquitos, Peru. We did so by comparing two...

Data from: The genetic architecture of novel trophic specialists: higher effect sizes are associated with exceptional oral jaw diversification in a pupfish adaptive radiation

Christopher H. Martin, Priscilla A. Erickson & Craig T. Miller
The genetic architecture of adaptation is fundamental to understanding the mechanisms and constraints governing diversification. However, most case studies focus on loss of complex traits or parallel speciation in similar environments. It is still unclear how the genetic architecture of these local adaptive processes compares to the architecture of evolutionary transitions contributing to morphological and ecological novelty. Here we identify quantitative trait loci (QTL) between two trophic specialists in an excellent case study for examining...

Data from: Rate heterogeneity across Squamata, misleading ancestral state reconstruction and the importance of proper null model specification

Sean Harrington & Tod W. Reeder
The binary-state speciation and extinction (BiSSE) model has been used in many instances to identify state-dependent diversification and reconstruct ancestral states. However, recent studies have shown that the standard procedure of comparing the fit of the BiSSE model to constant-rate birth–death models often inappropriately favours the BiSSE model when diversification rates vary in a state-independent fashion. The newly developed HiSSE model enables researchers to identify state-dependent diversification rates while accounting for state-independent diversification at the...

Data from: Local adaptation of fish consumers alters primary production through changes in algal community composition and diversity

Ron D. Bassar, Brynne L. Bryan, Michael C. Marshall, Catherine M. Pringle, David N. Reznick, Joseph Travis & Ronald D. Bassar
Ecological research has focused on understanding how changes in consumer abundance affect community structure and ecosystem processes. However, there is increasing evidence that evolutionary changes in consumers can also alter community structure and ecosystem processes. Typically, the effects of consumer phenotype on communities and ecosystem processes are measured as net effects that integrate numerous ecological pathways. Here, we analyze new data from experimental manipulations of Trinidadian guppy Poecilia reticulata presence, density and phenotype to examine...

Data from: Plumage genes and little else distinguish the genomes of hybridizing warblers

David P. L. Toews, Scott A. Taylor, Rachel Vallender, Alan Brelsford, Bronwyn G. Butcher, Philipp W. Messer & Irby J. Lovette
When related taxa hybridize extensively, their genomes may become increasingly homogenized over time. This mixing via hybridization creates conservation challenges when it reduces genetic or phenotypic diversity and when it endangers previously distinct species via genetic swamping [ 1 ]. However, hybridization also facilitates admixture mapping of traits that distinguish each species and the associated genes that maintain distinctiveness despite ongoing gene flow [ 2 ]. We address these dual aspects of hybridization in the...

Data from: Sequencing improves our ability to study threatened migratory species: genetic population assignment in California's Central Valley Chinook salmon

Mariah H. Meek, Melinda R. Baerwald, Molly R. Stephens, Alisha Goodbla, Michael R. Miller, Katharine M. H. Tomalty & Bernie May
Effective conservation and management of migratory species requires accurate identification of unique populations, even as they mix along their migratory corridors. While telemetry has historically been used to study migratory animal movement and habitat use patterns, genomic tools are emerging as a superior alternative in many ways, allowing large-scale application at reduced costs. Here, we demonstrate the usefulness of genomic resources for identifying single-nucleotide polymorphisms (SNPs) that allow fast and accurate identification of the imperiled...

Data from: Stimulation-based control of dynamic brain networks

Sarah Feldt Muldoon, Fabio Pasqualetti, Shi Gu, Matthew Cieslak, Scott T. Grafton, Jean M. Vettel & Danielle S. Bassett
The ability to modulate brain states using targeted stimulation is increasingly being employed to treat neurological disorders and to enhance human performance. Despite the growing interest in brain stimulation as a form of neuromodulation, much remains unknown about the network-level impact of these focal perturbations. To study the system wide impact of regional stimulation, we employ a data-driven computational model of nonlinear brain dynamics to systematically explore the effects of targeted stimulation. Validating predictions from...

Data from: Extensive genetic diversity among populations of the malaria mosquito Anopheles moucheti revealed by population genomics

Caroline Fouet, Colince Kamdem, Stephanie Gamez & Bradley J. White
Malaria vectors are exposed to intense selective pressures due to large-scale intervention programs that are underway in most African countries. One of the current priorities is therefore to clearly assess the adaptive potential of Anopheline populations, which is critical to understand and anticipate the response mosquitoes can elicit against such adaptive challenges. The development of genomic resources that will empower robust examinations of evolutionary changes in all vectors including currently understudied species is an inevitable...

Data from: Experimental parasite community ecology: intraspecific variation in a large tapeworm affects community assembly

Daniel P. Benesh & Martin Kalbe
Non-random species associations occur in naturally-sampled parasite communities. The processes resulting in predictable community structure (e.g. particular host behaviours, cross-immunity, interspecific competition) could be affected by traits that vary within a parasite species, like growth or antigenicity. We experimentally infected three-spined sticklebacks with a large tapeworm (Schistocephalus solidus) that impacts the energy needs, foraging behaviour, and immune reactions of its host. The tapeworms came from two populations, characterized by high or low growth in sticklebacks....

Data from: The evolution of reproductive diversity in Afrobatrachia: a phylogenetic comparative analysis of an extensive radiation of African frogs

Daniel M. Portik & David C. Blackburn
The reproductive modes of anurans (frogs and toads) are the most diverse of terrestrial vertebrates, and a major challenge is identifying selective factors that promote the evolution or retention of reproductive modes across clades. Terrestrialized anuran breeding strategies have evolved repeatedly from the plesiomorphic fully aquatic reproductive mode, a process thought to occur through intermediate reproductive stages. Several selective forces have been proposed for the evolution of terrestrialized reproductive traits, but factors such as water...

Data from: Agricultural practices for food safety threaten pest control services for fresh produce

Daniel S. Karp, Rebekah Moses, Sasha Gennet, Matthew S. Jones, Shimat Joseph, Leithen K. M'Gonigle, Lauren C. Ponisio, William E. Snyder & Claire Kremen
Over the past decade, several foodborne disease outbreaks provoked widespread reforms to the fresh produce industry. Subsequent concerns about wildlife vectors and contaminated manures created pressure on growers to discontinue use of manure-based composts and remove nearby semi-natural vegetation. Despite widespread adoption, impacts of these practices on ecosystem services such as pest control have not been assessed. We used a landscape-scale field experiment to quantify associations between compost applications, semi-natural vegetation, pest control services and...

Data from: Genomic evidence for ecological divergence against a background of population homogeneity in the marine snail Chlorostoma funebralis

Lani U. Gleason & Ronald S. Burton
The balance between natural selection, gene flow and genetic drift is difficult to resolve in marine invertebrates with extensive dispersal and fluctuating population sizes. The intertidal snail Chlorostoma funebralis has planktonic larvae and previous work using mtDNA polymorphism reported no genetic population structure. Nevertheless, recent studies have documented differences in thermal tolerance and transcriptomic responses to heat stress between northern and southern California, USA, populations. To gain insight into the dynamics influencing adaptive divergence, we...

Data from: Elevation and latitude interact to drive life-history variation in precocial birds: a comparative analysis using Galliformes

Priya Balasubramaniam & John T. Rotenberry
Elevational gradients provide a powerful laboratory for understanding the environmental and ecological drivers of geographic variation in avian life-history strategies. Environmental variation across elevational gradients is hypothesized to select for a trade-off of reduced fecundity (lower clutch size and/or fewer broods) for higher offspring quality (larger eggs and/or increased parental care) in higher elevation species and populations. In birds, a focus on altricial species from north temperate latitudes has prevented an evaluation of the generality...

Data from: Competing for seed dispersal: evidence for the role of avian seed hoarders in mediating apparent predation among oaks

Mario B. Pesendorfer & Walter D. Koenig
In communities of large-seeded tree species, generalist seed hoarders often link the temporally variable dynamics of various species in ways that can result in indirect ecological interactions. A special case of such interactions is ‘apparent predation’ – when variation in seed production of one tree species changes the outcome of the interaction between seed hoarders and another tree species from seed dispersal mutualism to predation. We investigated how two species of avian hoarders responded to...

Data from: Functional homogenization of flower visitor communities with urbanization

Nicolas Deguines, Romain Julliard, Mathieu De Flores & Colin Fontaine
Land-use intensification and resulting habitat loss are put forward as the main causes of flower visitor decline. However, the impact of urbanization, the prime driver of land-use intensification in Europe, is poorly studied. In particular, our understanding of whether and how it affects the composition and functioning of flower visitor assemblages is scant, yet required to cope with increasing urbanization worldwide. Here, we use a nation-wide dataset of plant-flower visitor (Coleoptera, Diptera, Hymenoptera, Lepidoptera) interactions...

Data from: Human–wildlife conflict, benefit sharing and the survival of lions in pastoralist community-based conservancies

Sara Blackburn, J. Grant C. Hopcraft, Joseph O. Ogutu, Jason Matthiopoulos & Laurence Frank
Like many wildlife populations across Africa, recent analyses indicate that African lions are declining rapidly outside of small fenced areas. Community conservancies – privately protected areas that engage community members in conservation – may potentially maintain wildlife populations in unfenced pastoralist regions, but their effectiveness in conserving large carnivores has been largely unknown until now. We identify drivers of lion survival in community conservancies within the Masai Mara ecosystem, Kenya, applying mark–recapture analyses to continuous...

Data from: Estimating resource preferences of a native bumblebee: the effects of availability and use-availability models on preference estimatess

Alexandra N. Harmon-Threatt, Perry De Valpine & Claire Kremen
Identifying resource preference is considered essential for developing targeted conservation plans but, for many species, questions remain about the best way to estimate preference. Resource preferences for bees are particularly difficult to determine as the resources they collect, nectar and pollen, are challenging to estimate availability and collection. Resources are traditionally measured at the flower or inflorescence level, but these measures of availability do not correspond to the resources actually used by bees. Additionally, it...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of California System
  • University of California, Berkeley
  • San Diego State University
  • University of California, Riverside
  • University of California, Davis
  • University of Florida
  • University of North Carolina
  • The University of Texas at Arlington
  • University of Lausanne
  • Australian National University