41 Works

Effect of Physical Activity Intelligence (PAI) monitoring in the maintenance phase of cardiac rehabilitation: A mixed methods evaluation

Amanda Hannan, Wayne Hing, Jeff Coombes, Suzanne Gough, Mike Climstein, Geoff Adsett, Satyajit Rohan Jayasinghe & James Furness
Dataset of the results of PAI monitoring on the amount and/or intensity of physical activity for people with cardiac disease and participants’ perceptions of this approach.

Deafness in Australian Cattle Dogs associated to QTL on chromosome 20 in GWAS analyses

Jenny Seddon, Susan Sommerlad & Marina Fortes
Pigment-associated deafness is a common hereditary condition in a range of dog breeds. The aim of this study was to perform a genome-wide association analysis to investigate the genetic architecture of deafness in Australian Cattle Dogs. Genotypes for 104,757 polymorphisms in 96 Australian dogs were available for analyses after quality control and included here. Further samples from US and UK are available here (https://doi.org/10.5061/dryad.sf7m0cg2n). A genomic relationship matrix was used in the mixed model analyses...

Factors influencing nature interactions vary between cities and types of nature interactions

Rui Ying Rachel Oh, Kelly Fielding, Thi Phuong Le Nghiem, Chia-Chen Chang, Danielle Shanahan, Kevin Gaston, Román Carrasco & Richard Fuller
1. There is mounting concern that people living more urbanised, modern lifestyles have fewer and lower quality interactions with nature, and therefore have limited access to the associated health and wellbeing benefits. Yet, variation in the different types of nature interactions and the factors that influence these interactions across populations are poorly understood. 2. We compared four types of nature interactions by administering surveys across two cities that differ markedly in urbanisation pattern and population...

The conspecific avoidance strategies of adult female-calf humpback whales

Katherine Indeck, Michael Noad & Rebecca Dunlop
During migration, humpback whale (Megaptera novaeangliae) adult females and their calves use acoustic calling to help maintain contact. The signals produced by these pairs, however, may unintentionally attract nearby breeding males, which can result in interactions that have negative physical and physiological effects on the calf. Therefore, maternal females must choose the vocal and/or behavioral strategy that most effectively balances intra-pair communication with male avoidance. Here, we analyzed differences in adult female-calf vocal activity and...

Dataset for: The Effect of Haematocrit on Measurement of the Mid-Infrared Refractive Index of Plasma in Whole Blood

David Rowe, Daniel Owens, Suzanne Parker, Saul Faust, James Wilkinson & Goran Mashanovich
Dataset DOI: https://doi.org/10.5258/SOTON/D1621 Article DOI: https://doi.org/10.3390/bios11110417 This data is used in the article 'The effect of haematocrit on the mid-infrared refractive index of blood plasma,' published by Biosensors. The data contained in data.xlsx are those used to plot the figures in the article. Measurement data were collected by ATR-FTIR spectroscopy at the University of Southampton during December 2019. Full methodological details can be found in the article. The XY data for each figure are contained...

Single molecule tracking raw data: SOX18 and its dominant-negative mutant SOX18RaOp

Alex McCann, Jieqiong Lou, Mehdi Moustaqil, Matthew Graus, Ailisa Blum, Frank Fontaine, Hui Liu, Winnie Luu, Peter Koopman, Emma Sierecki, Yann Gambin, Frédéric Meunier, Zhe Liu, Elizabeth Hinde & Mathias Francois
Few genetically dominant mutations involved in human disease have been fully explained at the molecular level. In cases where the mutant gene encodes a transcription factor, the dominant-negative mode of action of the mutant protein is particularly poorly understood. Here, we studied the genome-wide mechanism underlying a dominant-negative form of the SOX18 transcription factor (SOX18RaOp) responsible for both the classical mouse mutant Ragged Opossum and the human genetic disorder Hypotrichosis-Lymphedema-Telangiectasia-Renal Syndrome. Combining three single-molecule imaging...

Self‐Assembly, Adaptive Response, and in , out‐ Stereoisomerism of Large Orthoformate Cryptands

Henrik Löw, Elena Mena‐Osteritz, Kathleen M. Mullen, Christof Jäger & Max von Delius
Abstract We report on triethylene glycol-based orthoformate cryptands, which adapt their bridgehead configurations in response to metal templates and intramolecular hydrogen bonding in a complex ma...

Sex differences in behavioural and anatomical estimates of visual acuity in the green swordtail Xiphophorus helleri

Eleanor M Caves, Fanny De Busserolles & Laura A Kelley
Among fishes in the family Poeciliidae, signals such as colour patterns, ornaments, and courtship displays play important roles in mate choice and male-male competition. Despite this, visual capabilities in Poeciliids are understudied, in particular visual acuity, the ability to resolve detail. We used three methods to quantify visual acuity in male and female green swordtails (Xiphophorus helleri), a species in which body size and the length of the male's extended caudal fin ('sword') serve as...

Subcellular view of host–microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan–microbe symbiosis

Meggie Hudspith, Laura Rix, Michelle Achlatis, Jeremy Bougoure, Paul Guagliardo, Peta L. Clode, Nicole S. Webster, Gerard Muyzer, Mathieu Pernice & Jasper M. De Goeij
Background: Sponges are increasingly recognised as key ecosystem engineers in many aquatic habitats. They play an important role in nutrient cycling due to their unrivalled capacity for processing both dissolved and particulate organic matter (DOM and POM) and the exceptional metabolic repertoire of their diverse and abundant microbial communities. Functional studies determining the role of host and microbiome in organic nutrient uptake and exchange, however, are limited. Therefore, we coupled pulse-chase isotopic tracer techniques with...

Data from: Fossil dermal denticles reveal the pre-exploitation baseline of a Caribbean coral reef shark community

Erin Dillon, Douglas McCauley, Jorge Manuel Morales-Saldaña, Nicole Leonard, Jian-Xin Zhao & Aaron O'Dea
Pre-exploitation shark baselines and the history of human impact on coral reef-associated shark communities in the Caribbean are poorly understood. We recovered shark dermal denticles from mid-Holocene (~7 ka) and modern reef sediments in Bocas del Toro, Caribbean Panama to reconstruct an empirical shark baseline before major human impact and quantify how much the modern shark community in the region had shifted from this historical reference point. We found that denticle accumulation rates, a proxy...

Reef cover classification (v1): internal coral reef class descriptors for global coral reef habitat mapping

Emma Kennedy, Stuart Phinn & Chris Roelfsema
Reef Cover Classification (version 1) document contains seventeen intra-reef geomorphic Reef Cover descriptors, developed for shallow-water tropical coral reef habitat mapping. Reef Cover describes spatially explicit zonal reef features that can be applied in different academic disciplines (e.g. geography, ecology, oceanography, marine sciences, marine policy and planning) as a geographical reference (e.g. to support political decision making or scientific research). The categorization is designed to be simple and inclusive in order to support broad-scale comparisons...

Change and persistence of hunting & dietary practices among Kadazandusun-Murut (KDM) bearded pig hunters in Sabah, Malaysia

David Kurz, Fiffy Saikim, Vanielie Justine, Jordan Bloem, Matthew Libassi, Matthew Luskin, Lauren Withey, Benoit Goossens, Justin Brashares & Matthew Potts
This dataset consists of 38 semi-structured interviews that we conducted with Kadazandusun-Murut (KDM) hunters in Sabah, Malaysian Borneo. The dataset is based on information shared during over 50 hours of time with the hunters. The data cover a variety of topics about the relationships between KDM hunters and bearded pigs, the favored game animal for this hunting group. We asked the hunters about their hunting and dietary practices, changes in hunting practices, and perceived changes...

Caterpillar polarisation vision: Histological methods and Rcodes for behavioural analyses

Mizuki Uemura, Andrej Meglič, Myron Zalucki, Andrea Battisti & Gregor Belušič
Processionary caterpillars of Thaumetopoea pityocampa (in Europe) and Ochrogaster lunifer (in Australia) (Lepidoptera: Notodontidae) form single files of larvae crawling head-to-tail when moving to feeding and pupation sites. We investigated if the processions are guided by polarisation vision. The heading orientation of processions could be manipulated with linear polarising filters held above the leading caterpillar. Exposure to changes in the angle of polarisation around the caterpillar resulted in orthogonal changes in heading angles. Anatomical analysis...

Quantitative assessment of agricultural sustainability reveals divergent priorities among nations

Guolin Yao, Xin Zhang, Srishti Vishwakarma, Carole Dalin, Adam Komarek, David Kanter, Kyle Davis, Kimberly Pfeifer, Jing Zhao, Tan Zou, Paolo D'Odorico, Christian Folberth, Fernando Galeana Rodriguez, Jessica Fanzo, Lorenzo Rosa, William Dennison, Mark Musumba, Amy Heyman & Eric Davidson
Agriculture is fundamental to all three pillars of sustainability, environment, society, and economy. However, the definition of sustainable agriculture and capacities to measure it remain elusive. Independent and transparent measurements of national sustainability are needed to gauge progress, encourage accountability, and inform policy. Here, we developed a Sustainable Agriculture Matrix (SAM) to quantify national performance indicators in agriculture and to investigate the tradeoffs and synergies based on historical data for most countries of the world....

Better left alone: Trying to control pasture grasses in untended rainforest plantings incurs multiple costs and delivers few benefits

Julian Radford-Smith & John Dwyer
1. Rainforest revegetation projects often deliver suboptimal outcomes due to the recolonisation of invasive pasture grasses, but little is known about the effects of grass reinvasion on the survival and growth of established saplings. Even less is known about the costs and benefits of controlling pasture grasses once they have reinvaded. 2. To address these knowledge gaps, we implemented a split-plot grass control experiment in a two-year old subtropical rainforest restoration planting in South East...

Single molecule tracking videos: SOX18 and its dominant-negative mutant SOX18RaOp

Alex McCann, Jieqiong Lou, Mehdi Moustaqil, Matthew Graus, Ailisa Blum, Frank Fontaine, Hui Liu, Winnie Luu, Peter Koopman, Emma Sierecki, Yann Gambin, Frédéric Meunier, Zhe Liu, Elizabeth Hinde & Mathias Francois
Few genetically dominant mutations involved in human disease have been fully explained at the molecular level. In cases where the mutant gene encodes a transcription factor, the dominant-negative mode of action of the mutant protein is particularly poorly understood. Here, we studied the genome-wide mechanism underlying a dominant-negative form of the SOX18 transcription factor (SOX18RaOp) responsible for both the classical mouse mutant Ragged Opossum and the human genetic disorder Hypotrichosis-Lymphedema-Telangiectasia-Renal Syndrome. Combining three single-molecule imaging...

Habitat structure mediates vulnerability to climate change through its effects on thermoregulatory behavior

Lauren Neel, Michael Logan, Daniel Nicholson, Christina Miller, Albert Chung, Inbar Maayan, Zach Degon, Madeline DuBois, John David Curlis, Q Taylor, Kaitlin Keegan, Owen McMillan, Jonathan Losos & Christian Cox
Tropical ectotherms are thought to be especially vulnerable to climate change because they are thermal specialists, having evolved in aseasonal thermal environments. However, even within the tropics, habitat structure can influence opportunities for behavioral thermoregulation. Open (and edge) habitats likely promote more effective thermoregulation due to the high spatial heterogeneity of the thermal landscape, while forests are thermally homogenous and may constrain opportunities for behavioral buffering of environmental temperatures. Nevertheless, the ways in which behavior...

Millennial-scale change on a Caribbean reef system that experiences hypoxia

Blanca Figuerola, Ethan L. Grossman, Noelle Lucey, Nicole D. Leonard & Aaron O'Dea
Coastal hypoxia has become an increasingly acknowledged threat to coral reefs that is potentially intensifying because of increased input of anthropogenic nutrients. Almirante Bay (Caribbean Panama) is a semi-enclosed system that experiences hypoxia in deeper waters which occasionally expand into shallow coral reefs, suffocating most aerobic benthic life. To explore the long-term history of reefs in the bay we extracted reef matrix cores from two reefs that today experience contrasting patterns of oxygenation. We constructed...

Post‐agriculture rain forest succession on a tropical Pacific island

Edward L. Webb, Avele Iofi Lalogafu’afu’a, Martin Van De Bult, Wei Kit Lee, Siaifoi Fa'aumu, Muhammad Izuddin, Mark A. MacDonald, Roger Meyer, Rachel Rui Ying Oh, Alden P. Tagarino, Rachel C. Webb, Adam C. Miles & Martin Bult
We surveyed the tree and seedling community in 34 vegetation plots in mature and >50 y old secondary lowland rain forest on the Polynesian island of Tutuila, American Samoa. The main data set includes original data from the tree surveys as well as all repeat surveys of seedling plots. We also include all R code and data sets used in analyses, including soil and environmental data, species by plot matrices for NMDS, and processed data...

Supplemental data for: Late Sandbian (Sa2) radiolarians of the Pingliang Formation from the Guanzhuang section, Gansu Province, China

Siyumini Perera & Jonathan C. Aitchison
A diverse, well-preserved radiolarian assemblage is reported from the Sandbian age Climacograptus bicornis Graptolite Biozone. This new assemblage recovered from the Pingliang Formation in the Guanzhuang section, China includes six new species along with 13 other previously described taxa. Geminusphaera new genus incorporates G. grandis n. sp and G. kongtongensis n. sp. and is proposed for inaniguttids constructed from two distinct porous spheres bearing seven or more primary spines. Protopylentonema new genus is introduced to...

Global sediment export based on InVEST Sediment Delivery Ratio model

Andrés F. Suarez Castro, Hawthorne L. Beyer, Caitlin D. Kuempel, Simon Linke, Pasquale Borrelli & Ove Hoegh-Guldberg
Sediment runoff from disturbed coastal catchments is a major threat to marine ecosystems. Understanding where sediments are produced and where they are delivered enables managers to design more effective strategies for improving water quality. In this context, targeted restoration of degraded terrestrial areas provides opportunities to reduce land-based runoff from coastal areas and consequently foster coral reef conservation. To do this strategically, a systematic approach is needed to identify watersheds where restoration actions will provide...

The iron-responsive genome of the chiton Acanthopleura granulata

Kevin Kocot, Rebecca M Varney, Daniel I Speiser, Carmel McDougall, Bernard M Degnan & Kevin M Kocot
Molluscs biomineralize structures that vary in composition, form, and function, prompting questions about the genetic mechanisms responsible for their production and the evolution of these mechanisms. Chitons (Mollusca, Polyplacophora) are a promising system for studies of biomineralization because they build a range of calcified structures including shell plates and spine- or scale-like sclerites. Chitons also harden the calcified teeth of their rasp-like radula with a coat of iron (as magnetite). Here we present the genome...

Data from: Crocodile social environments dictated by male philopatry

Cameron Baker, Céline Frère, Craig Franklin, Hamish Campbell, Terri Irwin & Ross Dwyer
Examining the social behaviors of solitary species can be challenging due to the rarity in which interactions occur and the large and often inaccessible areas which these animals inhabit. As shared space-use is a prerequisite for the expression of social behaviors, we can gain insights into the social environments of solitary species by examining the degree of spatial overlap between individuals. Over a 10-year period, we examined how spatial overlap amongst 105 estuarine crocodiles Crocodylus...

Data from: Plant communities, populations and individuals have distinct responses to short-term warming and neighbour biomass removal in two montane grasslands

Travis Britton, Mark Hovenden, Meagan Porter, Rose Brinkhoff, Anna Flittner & Margaret Mayfield
Aims Climate change will impact plant communities and populations but also individual plant performance. Most predictive models of community responses to climate change ignore individual‐level biotic interactions despite their known importance for community diversity and functioning. Here, we consider plant fitness and diversity responses to climate change associated factors at three organisational levels: communities, populations and individual plants, to increase our understanding of how plant communities respond to climate change. Location Montane grassland, Tasmania, Australia....

The visual ecology of Holocentridae, a nocturnal coral reef fish family with a deep-sea-like multibank retina

Fanny De Busserolles, Fabio Cortesi, Lily Fogg, Martin Luehrmann, Sara Stieb & Justin Marshall
The visual systems of teleost fishes usually match their habitats and lifestyles. Since coral reefs are bright and colourful environments, the visual systems of their diurnal inhabitants have been more extensively studied than those of nocturnal species. In order to fill this knowledge gap, we conducted a detailed investigation of the visual system of the nocturnal reef fish family Holocentridae. Results showed that the visual system of holocentrids is well adapted to their nocturnal lifestyle...

Registration Year

  • 2021

Resource Types

  • Dataset


  • University of Queensland
  • UNSW Sydney
  • University of Melbourne
  • Griffith University
  • University of California, Santa Barbara
  • Smithsonian Tropical Research Institute
  • University of Sydney
  • Janelia Farm Research Campus
  • University of the Sunshine Coast
  • University of California, Berkeley