756 Works

Additional file 2 of The alteration of N6-methyladenosine (m6A) modification at the transcriptome-wide level in response of heat stress in bovine mammary epithelial cells

Ying Qi, Yiming Zhang, Jing Zhang, Jing Wang & Qiuling Li
Dataset published via figshare
Additional file 2. m6A peaks related genes in H and NH groups.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22607078.v1 Cite

Additional file 4 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

Rebecca E. Green, Jodie Lord, Marzia A. Scelsi, Jin Xu, Andrew Wong, Sarah Naomi-James, Alex Handy, Lachlan Gilchrist, Dylan M. Williams, Thomas D. Parker, Christopher A. Lane, Ian B. Malone, David M. Cash, Carole H. Sudre, William Coath, David L. Thomas, Sarah Keuss, Richard Dobson, Cristina Legido-Quigley, Nick C. Fox, Jonathan M. Schott, Marcus Richards & Petroula Proitsi
Dataset published via figshare
Additional file 4: Supplementary file 4: Table 4. Associations between metabolites, modules, outcomes and lifestyle factors.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22608190.v1 Cite

Additional file 2 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 2. stable_genomic_loci.bed LOLA Analysis File of stable ATAC-seq peaks.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626208 Cite

Additional file 3 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 3. AB_genomic_loci.bed LOLA Analysis File of ATAC-seq peaks with A to B compartment switch.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626211 Cite

Additional file 5 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 5. LOLA_enrichment_results.tsv LOLA Analysis Results File.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626217 Cite

Additional file 6 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 6. shared_comp_genes_down.csv Expression of decreased genes with shared AB compartment switches.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626220 Cite

Additional file 9 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 9. TAD_decreased.csv Lost TAD activity due to NSD2 coordinates.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626229 Cite

Additional file 8 of Metabolic responses in blood-stage malaria parasites associated with increased and decreased sensitivity to PfATP4 inhibitors

Shivendra G. Tewari, Rubayet Elahi, Bobby Kwan, Krithika Rajaram, Suyash Bhatnagar, Jaques Reifman, Sean T. Prigge, Akhil B. Vaidya & Anders Wallqvist
Dataset published via figshare
Additional file 8: Table S3. Metabolic reactions associated with differential metabolism of KAE609- and PA21A092-treated parasites (discussed with Fig. 5).
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22617133 Cite

Additional file 3 of Abnormal signal pathways and tumor heterogeneity in osteosarcoma

Yifeng Sun, Chunming Zhang, Qiongxuan Fang, Wenqiang Zhang & Wei Liu
Dataset published via figshare
Additional file 3: Table S2. Signatures of each module in WGCNA analysis.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22598624 Cite

Additional file 4 of Abnormal signal pathways and tumor heterogeneity in osteosarcoma

Yifeng Sun, Chunming Zhang, Qiongxuan Fang, Wenqiang Zhang & Wei Liu
Dataset published via figshare
Additional file 4: Table S3. Signatures of each OS subtype.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22598627.v1 Cite

Additional file 10 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

Rui Dong, Ben Luo, Li Tang, Qiu-xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang & Jin He
Dataset published via figshare
Additional file 10: Table S7. Expression of genes involved in Ca2+ signaling in common vetch under cold acclimation conditions
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22604662.v1 Cite

Additional file 11 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

Rui Dong, Ben Luo, Li Tang, Qiu-xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang & Jin He
Dataset published via figshare
Additional file 11: Table S8. Expression of genes related to redox processes in common vetch under cold acclimation conditions
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22604665.v1 Cite

Additional file 14 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

Rui Dong, Ben Luo, Li Tang, Qiu-xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang & Jin He
Dataset published via figshare
Additional file 14: Table S11. Expression of genes related to TFs in common vetch under cold acclimation conditions
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22604674.v1 Cite

Additional file 5 of Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing

Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, Katie Jenike, Shujun Ou, Sergey Aganezov, Xingang Wang, Zachary B. Lippman, Michael C. Schatz & Sebastian Soyk
Dataset published via figshare
Additional file 5. Source data for main and supplementary figures.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22601104 Cite

Additional file 18 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Dataset published via figshare
Additional file 18: Table S14. Details of 4492 PUL contained in 556 Bacteroides MAG.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22610704 Cite

Additional file 2 of Neuroglobin plays as tumor suppressor by disrupting the stability of GPR35 in colorectal cancer

Qin Xiang, Dishu Zhou, Xinni Xiang, Xin Le, Chaoqun Deng, Ran Sun, Chunhong Li, Huayang Pang, Jin He, Zeze Zheng, Jun Tang, Weiyan Peng, Xi Peng, Xiaoqian He, Fan Wu, Jingfu Qiu, Yongzhu Xu & Tingxiu Xiang
Dataset published via figshare
Additional file 2. Methyl target information and results.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22622638 Cite

Additional file 1 of Multi-omic characterization of the maize GPI synthesis mutant gwt1 with defects in kernel development

Runmiao Tian, Jianjun Jiang, Shirong Bo, Hui Zhang, Xuehai Zhang, Sarah Jane Hearne, Jihua Tang, Dong Ding & Zhiyuan Fu
Dataset published via figshare
Supplementary Material 1
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22620238 Cite

Additional file 2 of Multi-omic characterization of the maize GPI synthesis mutant gwt1 with defects in kernel development

Runmiao Tian, Jianjun Jiang, Shirong Bo, Hui Zhang, Xuehai Zhang, Sarah Jane Hearne, Jihua Tang, Dong Ding & Zhiyuan Fu
Dataset published via figshare
Supplementary Material 2
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22620241 Cite

Additional file 1 of Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets

Haifeng Qiu, Ning Su, Jing Wang, Shuping Yan & Jing Li
Dataset published via figshare
Additional file 1. Additional Table, supplementary Table 1, overview of the proteomics profiles identified by DIA in SCCC and normal cervix tissues.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22619650.v1 Cite

Additional file 2 of Metabolomic analysis of aqueous humor reveals potential metabolite biomarkers for differential detection of macular edema

Dan Jiang, Congcong Yan, Lina Ge, Chun Yang, Ying Huang, Yau Kei Chan, Chonghua Chen, Wei Chen, Meng Zhou & Bing Lin
Dataset published via figshare
Additional file 2. Differentially expressed pathways in the macular edema (ME) compared with the control group. Tables S5–S8. Differentially expressed pathways in the DME, BRVO-ME, AMD-ME and ME groups compared with the CON group. AMD-ME, macular edema of age-related macular degeneration; BRVO-ME, macular edema of branch retinal vein occlusion; CON, control; DME, diabetic macular edema.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22617653.v1 Cite

Anisometropia and its association with refraction development in highly myopic children

Wei Gong, Zhuoting Zhu, Gabriella Bulloch, Jingjing Wang, Jun Chen, Linlin Du, Jinliuxing Yang, Bo Zhang, Xiangui He, Haidong Zou, Xun Xu, Junjie Deng & Jiannan Huang
Dataset published via Taylor & Francis
Anisometropia can affect visual development in children. Investigations of anisometropia in high myopes would explore potential causes related to anisometropia, highlighting the management of anisometropia in high myopia. The prevalence of anisometropia ranged from 0.6% to 4.3% in general paediatric population and from 7% to 14% in myopes. Anisometropia is regarded as an associated factor for myopia development, while myopia progression is a stimulus driving anisometropic development. The purpose of this study was to investigate...
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22663928.v1 Cite

Additional file 2 of X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study

Lystra P. Hayden, Brian D. Hobbs, Robert Busch, Michael H. Cho, Ming Liu, Camila M. Lopes-Ramos, David A. Lomas, Per Bakke, Amund Gulsvik, Edwin K. Silverman, James D. Crapo, Terri H. Beaty, Nan M. Laird, Christoph Lange & Dawn L. DeMeo
Dataset published via figshare
Additional file 2: Table S1. XWAS Meta-analysis All Top Suggested Associations At 10-6 Or Less If Present, Otherwise Top Suggested Associations At 10–5 Or Less
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22602146 Cite

Additional file 2 of X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study

Lystra P. Hayden, Brian D. Hobbs, Robert Busch, Michael H. Cho, Ming Liu, Camila M. Lopes-Ramos, David A. Lomas, Per Bakke, Amund Gulsvik, Edwin K. Silverman, James D. Crapo, Terri H. Beaty, Nan M. Laird, Christoph Lange & Dawn L. DeMeo
Dataset published via figshare
Additional file 2: Table S1. XWAS Meta-analysis All Top Suggested Associations At 10-6 Or Less If Present, Otherwise Top Suggested Associations At 10–5 Or Less
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22602146.v1 Cite

Additional file 4 of X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study

Lystra P. Hayden, Brian D. Hobbs, Robert Busch, Michael H. Cho, Ming Liu, Camila M. Lopes-Ramos, David A. Lomas, Per Bakke, Amund Gulsvik, Edwin K. Silverman, James D. Crapo, Terri H. Beaty, Nan M. Laird, Christoph Lange & Dawn L. DeMeo
Dataset published via figshare
Additional file 4: Table S3. Replication Examination Of Associations From Other Studies In This XWAS Meta-analysis
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22602152.v1 Cite

Additional file 1 of Spatiotemporal evolution of the clear cell renal cell carcinoma microenvironment links intra-tumoral heterogeneity to immune escape

Mahdi Golkaram, Fengshen Kuo, Sounak Gupta, Maria I. Carlo, Michael L. Salmans, Raakhee Vijayaraghavan, Cerise Tang, Vlad Makarov, Phillip Rappold, Kyle A. Blum, Chen Zhao, Rami Mehio, Shile Zhang, Jim Godsey, Traci Pawlowski, Renzo G. DiNatale, Luc G. T. Morris, Jeremy Durack, Paul Russo, Ritesh R. Kotecha, Jonathan Coleman, Ying-Bei Chen, Victor E. Reuter, Robert J. Motzer, Martin H. Voss … & A. Ari Hakimi
Dataset published via figshare
Additional file1 Supplementary Tables: Cohort characteristics, gene signature scores, ITH classification and histopathology review results
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22605457 Cite

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