401 Works

Additional file 2 of Sex differences in the intergenerational link between maternal and neonatal whole blood DNA methylation: a genome-wide analysis in 2 birth cohorts

Jie Hu, Xin Xu, Jun Li, Yu Jiang, Xiumei Hong, Kathryn M. Rexrode, Guoying Wang, Frank B. Hu, Hongmei Zhang, Wilfried J. Karmaus, Xiaobin Wang & Liming Liang
Dataset published via figshare
Additional file 2. Supplementary Tables.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22622809 Cite

Additional file 1 of Multi-omic characterization of the maize GPI synthesis mutant gwt1 with defects in kernel development

Runmiao Tian, Jianjun Jiang, Shirong Bo, Hui Zhang, Xuehai Zhang, Sarah Jane Hearne, Jihua Tang, Dong Ding & Zhiyuan Fu
Dataset published via figshare
Supplementary Material 1
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22620238 Cite

Additional file 2 of Multi-omic characterization of the maize GPI synthesis mutant gwt1 with defects in kernel development

Runmiao Tian, Jianjun Jiang, Shirong Bo, Hui Zhang, Xuehai Zhang, Sarah Jane Hearne, Jihua Tang, Dong Ding & Zhiyuan Fu
Dataset published via figshare
Supplementary Material 2
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22620241 Cite

Additional file 4 of Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets

Haifeng Qiu, Ning Su, Jing Wang, Shuping Yan & Jing Li
Dataset published via figshare
Additional file 4. Additional Table, supplementary Table 4, the qualitative differences between SCCC and normal tissues.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22619659 Cite

Additional file 2 of Neuroglobin plays as tumor suppressor by disrupting the stability of GPR35 in colorectal cancer

Qin Xiang, Dishu Zhou, Xinni Xiang, Xin Le, Chaoqun Deng, Ran Sun, Chunhong Li, Huayang Pang, Jin He, Zeze Zheng, Jun Tang, Weiyan Peng, Xi Peng, Xiaoqian He, Fan Wu, Jingfu Qiu, Yongzhu Xu & Tingxiu Xiang
Dataset published via figshare
Additional file 2. Methyl target information and results.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22622638 Cite

Additional file 2 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 2. stable_genomic_loci.bed LOLA Analysis File of stable ATAC-seq peaks.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626208 Cite

Additional file 3 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 3. AB_genomic_loci.bed LOLA Analysis File of ATAC-seq peaks with A to B compartment switch.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626211 Cite

Additional file 5 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 5. LOLA_enrichment_results.tsv LOLA Analysis Results File.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626217 Cite

Additional file 6 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 6. shared_comp_genes_down.csv Expression of decreased genes with shared AB compartment switches.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626220 Cite

Additional file 9 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Sonali Narang, Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown, Pandurang Kolekar, Heather Mulder, Ying Shao, John Easton, Xiaotu Ma, Aristotelis Tsirigos & William L. Carroll
Dataset published via figshare
Additional file 9. TAD_decreased.csv Lost TAD activity due to NSD2 coordinates.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22626229 Cite

Additional file 4 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

Rebecca E. Green, Jodie Lord, Marzia A. Scelsi, Jin Xu, Andrew Wong, Sarah Naomi-James, Alex Handy, Lachlan Gilchrist, Dylan M. Williams, Thomas D. Parker, Christopher A. Lane, Ian B. Malone, David M. Cash, Carole H. Sudre, William Coath, David L. Thomas, Sarah Keuss, Richard Dobson, Cristina Legido-Quigley, Nick C. Fox, Jonathan M. Schott, Marcus Richards & Petroula Proitsi
Dataset published via figshare
Additional file 4: Supplementary file 4: Table 4. Associations between metabolites, modules, outcomes and lifestyle factors.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22608190.v1 Cite

Additional file 17 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Dataset published via figshare
Additional file 17: Table S13. Detailed information on the six active polysaccharide-degrading enzymes (GH, GT, PL, CE, CBM, and AA) among the proteins encoded by the 2272 genomes.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22610698 Cite

Additional file 20 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Dataset published via figshare
Additional file 20: Table S16. 266 ARG predicted in 2272 MAG.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22610710 Cite

Additional file 22 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Dataset published via figshare
Additional file 22: Table S17. Abundance of antibiotic resistance genes in 242 samples.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22610719.v1 Cite

Additional file 4 of Not1 and Not4 inversely determine mRNA solubility that sets the dynamics of co-translational events

George Allen, Benjamin Weiss, Olesya O. Panasenko, Susanne Huch, Zoltan Villanyi, Benjamin Albert, Daniel Dilg, Marina Zagatti, Paul Schaughency, Susan E. Liao, Jeff Corden, Christine Polte, David Shore, Zoya Ignatova, Vicent Pelechano & Martine A. Collart
Dataset published via figshare
Additional file 4: Table S3. Not4 and RNAPII PAR-CLIP.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22614331 Cite

Additional file 2 of The alteration of N6-methyladenosine (m6A) modification at the transcriptome-wide level in response of heat stress in bovine mammary epithelial cells

Ying Qi, Yiming Zhang, Jing Zhang, Jing Wang & Qiuling Li
Dataset published via figshare
Additional file 2. m6A peaks related genes in H and NH groups.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22607078.v1 Cite

Additional file 3 of Abnormal signal pathways and tumor heterogeneity in osteosarcoma

Yifeng Sun, Chunming Zhang, Qiongxuan Fang, Wenqiang Zhang & Wei Liu
Dataset published via figshare
Additional file 3: Table S2. Signatures of each module in WGCNA analysis.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22598624 Cite

Additional file 4 of Abnormal signal pathways and tumor heterogeneity in osteosarcoma

Yifeng Sun, Chunming Zhang, Qiongxuan Fang, Wenqiang Zhang & Wei Liu
Dataset published via figshare
Additional file 4: Table S3. Signatures of each OS subtype.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22598627.v1 Cite

Additional file 6 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

Rui Dong, Ben Luo, Li Tang, Qiu-xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang & Jin He
Dataset published via figshare
Additional file 6: Table S3. Primers used to verify the expression of cold tolerance-related genes
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22604650 Cite

Additional file 2 of Integrated single-molecule real-time sequencing and RNA sequencing reveal the molecular mechanisms of salt tolerance in a novel synthesized polyploid genetic bridge between maize and its wild relatives

Xiaofeng Li, Xingyu Wang, Qiangqiang Ma, Yunfeng Zhong, Yibo Zhang, Ping Zhang, Yingzheng Li, Ruyu He, Yang Zhou, Yang Li, Mingjun Cheng, Xu Yan, Yan Li, Jianmei He, Muhammad Zafar Iqbal, Tingzhao Rong & Qilin Tang
Dataset published via figshare
Additional file 2: Table S1. SMRT sequences summary. Table S2. Statistics of unigenes unmapped to maize. Table S3. Functional annotation of unigenes unmapped to maize. Table S4. Orthologous groups in nine grass species according to maize (Mo17 and B73)-MTP-T. dactyloides ortholog relationships. Table S5. Statistics of orthologous gene set between MTP and nine grass species. Table S6. Summary statistics of RNA sequencing data. Table S7. Comparison of copy numbers of gene families in MTP that...
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22601513 Cite

Additional file 1 of Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets

Haifeng Qiu, Ning Su, Jing Wang, Shuping Yan & Jing Li
Dataset published via figshare
Additional file 1. Additional Table, supplementary Table 1, overview of the proteomics profiles identified by DIA in SCCC and normal cervix tissues.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22619650.v1 Cite

Additional file 2 of Metabolomic analysis of aqueous humor reveals potential metabolite biomarkers for differential detection of macular edema

Dan Jiang, Congcong Yan, Lina Ge, Chun Yang, Ying Huang, Yau Kei Chan, Chonghua Chen, Wei Chen, Meng Zhou & Bing Lin
Dataset published via figshare
Additional file 2. Differentially expressed pathways in the macular edema (ME) compared with the control group. Tables S5–S8. Differentially expressed pathways in the DME, BRVO-ME, AMD-ME and ME groups compared with the CON group. AMD-ME, macular edema of age-related macular degeneration; BRVO-ME, macular edema of branch retinal vein occlusion; CON, control; DME, diabetic macular edema.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22617653.v1 Cite

Additional file 8 of Metabolic responses in blood-stage malaria parasites associated with increased and decreased sensitivity to PfATP4 inhibitors

Shivendra G. Tewari, Rubayet Elahi, Bobby Kwan, Krithika Rajaram, Suyash Bhatnagar, Jaques Reifman, Sean T. Prigge, Akhil B. Vaidya & Anders Wallqvist
Dataset published via figshare
Additional file 8: Table S3. Metabolic reactions associated with differential metabolism of KAE609- and PA21A092-treated parasites (discussed with Fig. 5).
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22617133 Cite

Additional file 7 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

Li Li, Boxin Lv, Kaiyou Zang, Yue Jiang, Chaofan Wang, Yanfang Wang, Kangyu Wang, Mingzhu Zhao, Ping Chen, Jun Lei, Yi Wang & Meiping Zhang
Dataset published via figshare
Additional file 7: Table S3. The nucleotide sequences of the PgHDZ gene transcripts identified from ginseng cv. Damaya and their subfamilies.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22607482.v1 Cite

Additional file 3 of Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer’s disease

Shuo Chen, Yuzhou Chang, Liangping Li, Diana Acosta, Yang Li, Qi Guo, Cankun Wang, Emir Turkes, Cody Morrison, Dominic Julian, Mark E. Hester, Douglas W. Scharre, Chintda Santiskulvong, Sarah XueYing Song, Jasmine T. Plummer, Geidy E. Serrano, Thomas G. Beach, Karen E. Duff, Qin Ma & Hongjun Fu
Dataset published via figshare
Additional file 3: Table S2. Overview of Visium SRT sample sequencing information and 3,000 gene features used fro SCTransform.
No citations were reported. No usage information was reported.
https://doi.org/10.6084/m9.figshare.22601011 Cite

Registration Year

  • 2023
    401

Resource Types

  • Dataset
    401

Affiliations

  • Johns Hopkins University
    401
  • Fudan University
    282
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    246
  • Nanjing Medical University
    227
  • Shanghai Jiao Tong University
    210
  • Capital Medical University
    209
  • Zhejiang University
    195
  • Peking University
    191
  • Sichuan University
    169
  • Sun Yat-sen University
    162

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