68 Works

Additional file 3 of Identification of alternative splicing events related to fatty liver formation in duck using full-length transcripts

Yiming Wang, Linfei Song, Mengfei Ning, Jiaxiang Hu, Han Cai, Weitao Song, Daoqing Gong, Long Liu, Jacqueline Smith, Huifang Li & Yinhua Huang
Additional file 3.

Additional file 14 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 14: Table S11. 16S rRNA gene data in the complete genomes assembled by Nanopore sequencing.

Additional file 18 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 18: Table S14. Details of 4492 PUL contained in 556 Bacteroides MAG.

Additional file 23 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 23: Table S18. The differences of microbial composition in racehorses and nonracehorses.

Additional file 10 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 10. The length of different types of overlapping SVs from three SV detection tools.

Additional file 5 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 5: Table S4. Information on 4142 MAG obtained from the gut of horse using Illumina and Nanopore sequencing technologies.

sj-xls-2-jcb-10.1177_0271678X231165653 - Supplemental material for H3K9 trimethylation dictates neuronal ferroptosis through repressing Tfr1

Ting Lan, Liye Hu, Tingting Sun, Xuechun Wang, Zhongnan Xiao, Danmin Shen, Weihua Wu, Zhaoli Luo, Chao Wei, Xiaotong Wang, Meng Liu, Yi Guo, Liyong Wang, Yamei Wang, Yabin Lu, Yan Yu, Fei Yang, Chenguang Zhang & Qian Li
Supplemental material, sj-xls-2-jcb-10.1177_0271678X231165653 for H3K9 trimethylation dictates neuronal ferroptosis through repressing Tfr1 by Ting Lan, Liye Hu, Tingting Sun, Xuechun Wang, Zhongnan Xiao, Danmin Shen, Weihua Wu, Zhaoli Luo, Chao Wei, Xiaotong Wang, Meng Liu, Yi Guo, Liyong Wang, Yamei Wang, Yabin Lu, Yan Yu, Fei Yang, Chenguang Zhang and Qian Li in Journal of Cerebral Blood Flow & Metabolism

Additional file 1 of Normalization of tumor markers and a clear resection margin affect progression-free survival of patients with unresectable pancreatic cancer who have undergone conversion surgery

Xiang Li, Xinyuan Liu, Na Lu, Yiwen Chen, Xiaochen Zhang, Chengxiang Guo, Wenbo Xiao, Xing Xue, Ke Sun, Meng Wang, Shunliang Gao, Yan Shen, Min Zhang, Jian Wu, Risheng Que, Jun Yu, Xueli Bai & Tingbo Liang
Additional file 1: Supplementary Figures 1-Figure 3.

Additional file 3 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 3: Table S3. Statistics and quality control information for the sequence data.

Additional file 3 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 3: Table S3. Statistics and quality control information for the sequence data.

Additional file 7 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 7: Table S5. Comparison of 4142 MAG with the public database.

Additional file 14 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 14: Table S11. 16S rRNA gene data in the complete genomes assembled by Nanopore sequencing.

Additional file 16 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 16: Table S12. Analysis of proteins functions for the 2272 MAG.

Additional file 17 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 17: Table S13. Detailed information on the six active polysaccharide-degrading enzymes (GH, GT, PL, CE, CBM, and AA) among the proteins encoded by the 2272 genomes.

Additional file 19 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 19: Table S15. ARG encoded by horse intestinal MAG were identified into 25 resistance classes.

Additional file 12 of Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu & Shengwei Hu
Additional file 12: Table S10. Details of the MAG assembled by Nanopore sequencing that are expected to be circular contigs.

Additional file 2 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 2. List of presence/absence variations (PAVs) between the pear cultivars ‘Bartlett’ and ‘Dangshansuli’.

Additional file 3 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 3. SVs detected by Sniffles_v2, CuteSV, and Nanovar that overlapped with PAVs at a range of sequencing depths.

Additional file 5 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 5. The number of SVs detected by Sniffles_v2, CuteSV, and Nanovar and merged by SURVIVOR.

Additional file 6 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 6. Annotation of genes within SVs detected by all three SV callers.

Additional file 9 of Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear

Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang & Jun Wu
Additional file 9. The number of SVs detected by Sniffles_v1 and Sniffles_v2 (SV length > 50 bp).

Nanomedicines in oral cancer: inspiration comes from extracellular vesicles and biomimetic nanoparticles - Supplementary dataset

Yu-Ting Bai, Xue-Qiong Zhang, Xiao-Jie Chen & Gang Zhou
Oral cancer is a common life-threatening malignancy having high mortality and morbidity rates. During the treatment process, individuals unavoidably experience severe side effects. It is essential to develop safer and more effective strategies. Currently, extracellular vesicles (EVs) and biomimetic nanoparticles are nanomedicines with long-term blood circulation and lower off-target toxicity that orchestrate immune responses and accumulate specifically in tumor sites. EVs create a synergetic effect by encapsulating drugs and collaborating with naturally loaded elements in...

NAT10 mediated mRNA acetylation modification patterns associated with colon cancer progression and microsatellite status

Hailin Zhang, Wenqing Shan, Zhenwei Yang, Yangyang Zhang, Meng Wang, Liping Gao, Lingxiu Zeng, Qiu Zhao & Jing Liu
N4-acetylcytidine (ac4C) is one type of RNA modification found in eukaryotes. RNA acetylation modifications are gradually expanding in oncology. However, the role of RNA acetylation modifications in colorectal cancer and its association with colorectal cancer microsatellite status remain unclear. Using public databases and in vitro experiments, we verified the expression and biological function of NAT10, as the key RNA acetylation modification enzyme, in colorectal cancer. The results showed that NAT10 was highly expressed in colorectal...

NAT10 mediated mRNA acetylation modification patterns associated with colon cancer progression and microsatellite status

Hailin Zhang, Wenqing Shan, Zhenwei Yang, Yangyang Zhang, Meng Wang, Liping Gao, Lingxiu Zeng, Qiu Zhao & Jing Liu
N4-acetylcytidine (ac4C) is one type of RNA modification found in eukaryotes. RNA acetylation modifications are gradually expanding in oncology. However, the role of RNA acetylation modifications in colorectal cancer and its association with colorectal cancer microsatellite status remain unclear. Using public databases and in vitro experiments, we verified the expression and biological function of NAT10, as the key RNA acetylation modification enzyme, in colorectal cancer. The results showed that NAT10 was highly expressed in colorectal...

Additional file 1 of Identification of alternative splicing events related to fatty liver formation in duck using full-length transcripts

Yiming Wang, Linfei Song, Mengfei Ning, Jiaxiang Hu, Han Cai, Weitao Song, Daoqing Gong, Long Liu, Jacqueline Smith, Huifang Li & Yinhua Huang
Additional file 1.

Registration Year

  • 2023
    68

Resource Types

  • Dataset
    68

Affiliations

  • Novogene Bioinformatics Institute
    68
  • Shandong Agricultural University
    62
  • Fudan University
    60
  • Capital Medical University
    60
  • Shanghai Jiao Tong University
    60
  • Sun Yat-sen University
    56
  • Beijing Tian Tan Hospital
    52
  • East China Normal University
    45
  • Xi'an Jiaotong University
    42
  • Chongqing Medical University
    33