6 Works

Data from: The Teleost Anatomy Ontology: anatomical representation for the genomics age

Wasila M. Dahdul, John G. Lundberg, Peter E. Midford, James P. Balhoff, Hilmar Lapp, Todd J. Vision, Melissa A. Haendel, Monte Westerfield & Paula M. Mabee
The rich knowledge of morphological variation among organisms reported in the systematic literature has remained in free-text format, impractical for use in large-scale synthetic phylogenetic work. This noncomputable format has also precluded linkage to the large knowledgebase of genomic, genetic, developmental, and phenotype data in model organism databases. We have undertaken an effort to prototype a curated, ontology-based evolutionary morphology database that maps to these genetic databases (http://kb.phenoscape.org) to facilitate investigation into the mechanistic basis...

Data from: A unified anatomy ontology of the vertebrate skeletal system

Wasila M. Dahdul, James P. Balhoff, David C. Blackburn, Alexander D. Diehl, Melissa A. Haendel, Brian K. Hall, Hilmar Lapp, John G. Lundberg, Christopher J. Mungall, Martin Ringwald, Erik Segerdell, Ceri E. Van Slyke, Matthew K. Vickaryous, Monte Westerfield & Paula M. Mabee
The skeleton is of fundamental importance in research in comparative vertebrate morphology, paleontology, biomechanics, developmental biology, and systematics. Motivated by research questions that require computational access to and comparative reasoning across the diverse skeletal phenotypes of vertebrates, we developed a module of anatomical concepts for the skeletal system, the Vertebrate Skeletal Anatomy Ontology (VSAO), to accommodate and unify the existing skeletal terminologies for the species-specific (mouse, the frog Xenopus, zebrafish) and multispecies (teleost, amphibian) vertebrate...

Data from: Multiple mating but not recombination causes quantitative increase in offspring genetic diversity for varying genetic architectures

Olav Rueppell, Stephen Meier & Roland Deutsch
Explaining the evolution of sex and recombination is particularly intriguing for some species of eusocial insects because they display exceptionally high mating frequencies and genomic recombination rates. Explanations for both phenomena are based on the notion that both increase colony genetic diversity, with demonstrated benefits for colony disease resistance and division of labor. However, the relative contributions of mating number and recombination rate to colony genetic diversity have never been simultaneously assessed. Our study simulates...

Data from: A revision of Evaniscus (Hymenoptera, Evaniidae) using ontology-based semantic phenotype annotation

Patricia L. Mullins, Ricardo Kawada, James P. Balhoff, Andrew R. Deans, James Balhoff, Patricia Mullins & Andrew Deans
The Neotropical evaniid genus Evaniscus Szépligeti currently includes six species. Two new species are described, Evaniscus lansdownei Mullins, sp. n. from Colombia and Brazil and Evaniscus rafaeli Kawada, sp. n. from Brazil. Evaniscus sulcigenis Roman, syn. n., is synonymized under Evaniscus rufithorax Enderlein. An identification key to species of Evaniscus is provided. Thirty-five parsimony informative morphological characters are analyzed for six ingroup and four outgroup taxa. A topology resulting in a monophyletic Evaniscus is presented...

Data from: Female preference for male courtship effort can drive the evolution of male mate choice

Sandra Helen South, Göran Arnqvist & Maria R. Servedio
The evolution of male mate choice is constrained by costs of choice in species with a male-biased operational sex ratio. Previous theoretical studies have shown that significant benefits of male choice are required, e.g., by mating with more fecund females, in order for these costs to be offset and a male preference to spread. In a series of population genetic models we show the novel effect that male mating preference, expressed as a bias in...

Data from: Phenotype uniformity in combined-stress environments has a different genetic architecture than in single-stress treatments

G. Buddhika Makumburage & Ann E. Stapleton
For crop production it is desirable for the mapping between genotype and phenotype to be consistent, such that an optimized genotype produces uniform sets of individual plants. Uniformity is strongly selected in breeding programs, usually automatically, as harvest equipment eliminates severely non-uniform individuals. Uniformity is genetically controlled, is known to be increased by interplant competition, and is predicted to increase upon abiotic stress. We mapped maize loci controlling genotype by environment interaction in plant height...

Registration Year

  • 2012

Resource Types

  • Dataset


  • University of North Carolina
  • National Evolutionary Synthesis Center
  • University of South Dakota
  • Oregon Health & Science University
  • University of Oregon
  • University of Kansas
  • Dalhousie University
  • University of Guelph
  • University at Buffalo, State University of New York
  • Jackson Laboratory