10 Works

Data from: Warming and eutrophication interactively drive changes in the methane-oxidizing community of shallow lakes

Thomas P.A. Nijman, Thomas A. Davidson, Stefan T.J. Weideveld, Joachim Audet, Chiara Esposito, Eti E. Levi, Adrian Ho, Leon P.M. Lamers, Erik Jeppesen & Annelies J. Veraart
Freshwater ecosystems are the largest natural source of the greenhouse gas methane (CH4), with shallow lakes a particular hot spot. Eutrophication and warming generally increase lake CH4 emissions but their impacts on the sole biological methane sink - methane oxidation - and methane-oxidizer community dynamics are poorly understood. We used the world’s longest-running freshwater climate-change mesocosm experiment to determine how methane-oxidizing bacterial (MOB) abundance and composition, and methane oxidation potential in the sediment respond to...

Human-induced reduction in mammalian movements impacts seed dispersal in the tropics

Marlee Tucker, Michela Busana, Mark Huijbregts & Adam Ford
Seed dispersal is a key process affecting the structure, composition and spatial dynamics of plant populations. Numerous plant species in the tropics rely upon animals to disperse their seeds. Humans have altered mammalian movements, which will likely affect seed dispersal distances (SDD). Altered SDD may have a range of consequences for plant communities including reduced seedling recruitment and plant biomass, seed trait homogenization, altered gene flow and a reduced capacity to respond to environmental changes....

Data for: Environmental and anthropogenic constraints on animal space use drive extinction risk worldwide

Myriam R. Hirt, Andrew D. Barnes, Alessandro Gentile, Laura J. Pollock, Benjamin Rosenbaum, Wilfried Thuiller, Marlee A. Tucker & Ulrich Brose
Animals require a certain amount of habitat to persist and thrive, and habitat loss is one of the most critical drivers of global biodiversity decline. While habitat requirements have been predicted by relationships between species traits and home range size, little is known about constraints imposed by environmental conditions and human impacts on a global scale. Our meta-analysis of 395 vertebrate species shows that global climate gradients in temperature and precipitation exert indirect effects via...

Data from: Why time-limited individuals can make populations more vulnerable to disturbance

Henk-Jan Van Der Kolk, Bruno Ens, Magali Frauendorf, Eelke Jongejans, Kees Oosterbeek, Willem Bouten & Martijn Van De Pol
Individual variation in disturbance vulnerability (i.e. the likelihood that disturbance negatively affects an individual’s fitness) can affect how disturbance impacts animal populations, as even at low disturbance levels some individuals could be severely affected and die. Individual variation in vulnerability can arise due to different responses to disturbance. We propose a new hypothesis that even when individuals respond similarly to disturbance, time-limited individuals are more at risk that their condition deteriorates since they have limited...

Prenatal auditory learning in avian vocal learners and non-learners

Diane Colombelli-Negrel, Mark Hauber, Christine Evans, Andrew Katsis, Lyanne Brouwer, Nicolas Adreani & Sonia Kleindorfer
Understanding when learning begins is critical for identifying the factors that shape both the developmental course and the function of information acquisition. Until recently, sufficient development of the neural substrates for any sort of vocal learning to begin in songbirds was thought to be reached well after hatching. New research shows that embryonic gene activation and the outcome of vocal learning can be modulated by sound exposure in ovo. We tested whether avian embryos across...

Data from: Host-parasite dynamics shaped by temperature and genotype: quantifying the role of underlying vital rates

Marjolein Bruijning, Erlend Fossen, Eelke Jongejans, Héléne Vanvelk, Joost Raeymaekers, Lynn Govaert, Kristien Brans, Sigurd Einum & Luc De Meester
1. Global warming challenges the persistence of local populations, not only through heat-induced stress, but also through indirect biotic changes. We study the interactive effects of temperature, competition and parasitism in the water flea Daphnia magna. 2. We carried out a common garden experiment monitoring the dynamics of Daphnia populations along a temperature gradient. Halfway through the experiment, all populations became infected with the ectoparasite Amoebidium parasiticum, enabling us to study interactive effects of temperature...

Biogeochemical and edaphic data from burned peat soil on the Stalybridge estate (UK), October 2018

B.J.M. Robroek, H.E.R. Shepherd, M.N. Steele & M.G. Dumont
This dataset contains biogeochemical and edaphic information from burned peat soil on the Stalybridge estate located near Manchester (UK), commonly referred to as Saddleworth moor. This study was conducted after a wildfire fire on the Saddleworth moor in June 2018. The sample plots included areas with deep and shallow peat burn. The data includes geographical information (location, elevation and slope), soil temperature and soil chemical composition (carbon, nitrogen and 22 other elements). The dataset is...

Searching for the causes of decline in the Dutch population of turtle doves Streptopelia turtur

E.H.J. De Vries, Ruud.P.B. Foppen, Henk Van Der Jeugd & Eelke Jongejans
European Turtle Doves Streptopelia turtur have experienced a sharp decline in population numbers over past decades. Much uncertainty exists about the main cause or causes. Several pressures have been suggested, but because they affect different stages of the life cycle of the Turtle Dove, it is difficult to compare their contributions to population decline. Here we applied a full life cycle approach to study how different pressures may have resulted in the decline. This was...

Source code for R tutorials and dataset for empirical case study on Malurus elegans (red-winged fairy wren)

Martijn Van De Pol & Lyanne Brouwer
Biological processes exhibit complex temporal dependencies due to the sequential nature of allocation decisions in organisms’ life-cycles, feedback loops, and two-way causality. Consequently, longitudinal data often contain cross-lags: the predictor variable depends on the response variable of the previous time-step. Although statisticians have warned that regression models that ignore such covariate endogeneity in time series are likely to be inappropriate, this has received relatively little attention in biology. Furthermore, the resulting degree of estimation bias...

RNA-seq of Arabidopsis root growth responses to mechanical impedance

Keith Lindsey, Amy Jacobsen, Jian Xu, Jennifer Topping & George Jervis
1. The growth and development of root systems, essential for plant performance, is influenced by mechanical properties of the substrate in which the plants grow. Mechanical impedance, such as by compacted soil, can reduce root elongation and limit crop productivity. 2. To understand better the mechanisms involved in plant root responses to mechanical impedance stress, we investigated changes in the root transcriptome and hormone signalling responses of Arabidopsis to artificial root barrier systems in vitro....

Registration Year

  • 2021
    10

Resource Types

  • Dataset
    10

Affiliations

  • Radboud University Nijmegen
    9
  • Nederlands Instituut voor Ecologie
    3
  • Dutch Centre for Field Ornithology
    2
  • Princeton University
    1
  • University of Waikato
    1
  • Radboud University
    1
  • Aarhus University
    1
  • German Center for Integrative Biodiversity Research
    1
  • Flinders University
    1
  • Leibniz Institute of Freshwater Ecology and Inland Fisheries
    1