56 Works

Data from: Logging and fire regimes alter plant communities

Elle J. Bowd, David B. Lindenmayer, Sam C. Banks & David P. Blair
Disturbances are key drivers of plant community composition, structure and function. Plant functional traits, including life forms and reproductive strategies are critical to the resilience and resistance of plant communities in the event of disturbance. Climate change and increasing anthropogenic disturbance are altering natural disturbance regimes, globally. When these regimes shift beyond the adaptive resilience of plant functional traits, local populations and ecosystem functions can become compromised. We tested the influence of multiple disturbances, of...

Data from: The unexpected genetic mating system of the red‐backed toadlet (Pseudophryne coriacea): a species with prolonged terrestrial breeding and cryptic reproductive behaviour

Daniel M. O'Brien, J. Scott Keogh, Aimee J. Silla & Phillip G. Byrne
Molecular technologies have revolutionised our classification of animal-mating systems, yet we still know very little about the genetic-mating systems of many vertebrate groups. It is widely believed that anuran amphibians have the highest reproductive diversity of all vertebrates, yet genetic mating systems have been studied in less than one percent of all described species. Here, we use SNPs to quantify the genetic-mating system of the terrestrial breeding red-backed toadlet Pseudophryne coriacea. In this species, breeding...

Data from: How to quantify (the response to) sexual selection on traits

Jonathan M. Henshaw, Michael D. Jennions & Loeske E. B. Kruuk
Natural selection operates via fitness components like mating success, fecundity and longevity, which can be understood as intermediaries in the causal process linking traits to fitness. Sexual selection occurs when traits influence mating or fertilisation success, which, in turn, influences fitness. We show how to quantify both these steps in a single path analysis, leading to better estimates of the strength of sexual selection. Our model controls for confounding variables, such as body size or...

Data from: Diversification across biomes in a continental lizard radiation

Lauren G. Ashman, Jason G. Bragg, Paul Doughty, Mark Norman Hutchinson, Sarah Bank, Nick Matzke, Paul M. Oliver, Craig Moritz, N. J. Matzke & P. Oliver
Ecological opportunity is a powerful driver of evolutionary diversification, and predicts rapid lineage and phenotypic diversification following colonisation of competitor-free habitats. Alternatively, topographic or environmental heterogeneity could be key to generating and sustaining diversity. We explore these hypotheses in a widespread lineage of Australian lizards: the Gehyra variegata group. This clade occurs across two biomes: the Australian monsoonal tropics (AMT), where it overlaps a separate, larger bodied clade of Gehyra and is largely restricted to...

Data from: More partners, more ranges: generalist legumes spread more easily around the globe

Tia L. Harrison, Anna K. Simonsen, John R. Stinchcombe & Megan E. Frederickson
How does mutualism affect range expansion? On one hand, mutualists might thrive in new habitats thanks to the resources, stress tolerance, or defense provided by their partners. On the other, specialized mutualists might fail to find compatible partners beyond their range margins, limiting further spread. A recent global analysis of legume ranges found that non-symbiotic legumes have been successfully introduced to more ranges than legumes that form symbioses with rhizobia, but there is still abundant...

Data from: Matching symbiotic associations of an endangered orchid to habitat to improve conservation outcomes

Noushka Reiter, Ann C. Lawrie & Celeste C. Linde
Background and Aims: An understanding of mycorrhizal variation, orchid seed germination temperature and the effect of co-occurring plant species could be critical for optimising conservation translocation of endangered plants with specialised mycorrhizal associations. Methods: Focussing on the orchid Thelymitra epipactoides we isolated mycorrhizal fungi from ten plants within each of three sites; Shallow Sands Woodland (SSW), Damp Heathland (DH) and Coastal Heathland Scrub (CHS). Twenty-seven fungal isolates were tested for symbiotic germination under three temperature...

Data from: Transgenerational effects of maternal sexual interactions in seed beetles

Susanne R.K. Zajitschek, Damian K. Dowling, Megan L. Head, Eduardo Rodriguez-Exposito & Francisco Garcia-Gonzalez
Mating bears large costs to females, especially in species with high levels of sexual conflict over mating rates. Given the direct costs to females associated with multiple mating, which include reductions in lifespan and lifetime reproductive success, past research focused on identifying potential indirect benefits (through increases in offspring fitness) that females may accrue. Far less attention has been given to understanding how costs of sexual interactions to females may span across generations. Hence, little...

Data from: A comprehensive and user-friendly framework for 3D-data visualisation in invertebrates and other organisms

Thomas L. Semple, Rod Peakall & Nikolai J. Tatarnic
Methods for 3D‐imaging of biological samples are experiencing unprecedented development, with tools such as X‐ray micro‐computed tomography (μCT) becoming more accessible to biologists. These techniques are inherently suited to small subjects and can simultaneously image both external and internal morphology, thus offering considerable benefits for invertebrate research. However, methods for visualising 3D‐data are trailing behind the development of tools for generating such data. Our aim in this article is to make the processing, visualisation and...

Data from: Taxon cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus)

Pável Matos-Maraví, Nicholas J. Matzke, Fredrick J. Larabee, Ronald M. Clouse, Ward C. Wheeler, Daniela Magdalena Sorger, Andrew V. Suarez & Milan Janda
Non-equilibrium dynamics and non-neutral processes, such as trait-dependent dispersal, are often missing from quantitative island biogeography models despite their potential explanatory value. One of the most influential non-equilibrium models is the taxon cycle, but it has been difficult to test its validity as a general biogeographical framework. Here, we test predictions of the taxon-cycle model using six expected phylogenetic patterns and a time-calibrated phylogeny of Indo-Pacific Odontomachus (Hymenoptera: Formicidae: Ponerinae), one of the ant genera...

Data from: Guidelines and considerations for designing field experiments simulating precipitation extremes in forest ecosystems

Heidi Asbjornsen, John L. Campbell, Katie A. Jennings, Matthew A. Vadeboncoeur, Cameron McIntire, Pamela H. Templer, Richard P. Phillips, Taryn L. Bauerle, Michael C. Dietze, Serita D. Frey, Peter M. Groffman, Rosella Guerrieri, Paul J. Hanson, Eric P. Kelsey, Alan K. Knapp, Nathan G. McDowell, Patrick Meir, Kimberly A. Novick, Scott V. Ollinger, Will T. Pockman, Paul G. Schaberg, Stan D. Wullschleger, Melinda D. Smith & Lindsey E. Rustad
1. Context. Precipitation regimes are changing in response to climate change, yet understanding of how forest ecosystems respond to extreme droughts and pluvials remains incomplete. As future precipitation extremes will likely fall outside the range of historical variability, precipitation manipulation experiments (PMEs) are critical to advancing knowledge about potential ecosystem responses. However, few PMEs have been conducted in forests compared to short-statured ecosystems, and forest PMEs have unique design requirements and constraints. Moreover, past forest...

Data from: Phylogenomics of a rapid radiation: the Australian rainbow skinks

Jason G. Bragg, Sally Potter, Ana C. Afonso Silva, Conrad J. Hoskin, Benjamin Y.H. Bai & Craig Moritz
Background: The application of target capture with next-generation sequencing now enables phylogenomic analyses of rapidly radiating clades of species. But such analyses are complicated by extensive incomplete lineage sorting, demanding the use of methods that consider this process explicitly, such as the multi-species coalescent (MSC) model. However, the MSC makes strong assumptions about divergence history and population structure, and when using the full Bayesian implementation, current computational limits mean that relatively few loci and samples...

Data from: High intra-specific variation in avian body condition responses to climate limits generalisation across species

Nina McLean, Henk P. Van Der Jeugd & Martijn Van De Pol
It is generally assumed that populations of a species will have similar responses to climate change, and thereby that a single value of sensitivity will reflect species-specific responses. However, this assumption is rarely systematically tested. High intraspecific variation will have consequences for identifying species- or population-level traits that can predict differences in sensitivity, which in turn can affect the reliability of projections of future climate change impacts. We investigate avian body condition responses to changes...

Data from: New information on Brindabellaspis stensioi Young, 1980, highlights morphological disparity in Early Devonian placoderms

Benedict King, Gavin C. Young & John A. Long
Acid prepared specimens of the placoderm Brindabellaspis stensioi (Early Devonian of New South Wales, Australia) revealed placoderm endocranial anatomy in unprecedented detail. Brindabellaspis has become a key taxon in discussions of early gnathostome phylogeny, and the question of placoderm monophyly versus paraphyly. The anterior orientation of the facial nerve and related hyoid arch structures in this taxon resemble fossil osteostracans (jawless vertebrates) rather than other early gnathostomes. New specimens of Brindabellaspis now reveal the previously...

Data from: True recognition of nestlings by hosts selects for mimetic cuckoo chicks

Hee-Jin Noh, Ros Gloag & Naomi E. Langmore
Cuckoos lay their eggs in other birds’ nests, whereafter the young cuckoo hatches, ejects its nestmates, and monopolizes the care of the host parents. Theory predicts that hosts should not evolve to recognize and reject cuckoo chicks because of the risk of mistakenly imprinting on a cuckoo chick in their first brood and thereafter always rejecting their own chicks. However, recent studies have revealed some hosts do reject cuckoo chicks from the nest, indicating that...

Data from: A new actinopterygian from the Late Devonian Gogo Formation, Western Australia

Brian Choo, Jing Lu, Sam Giles, Kate Trinajstic & John A. Long
The study of early actinopterygians (ray-finned fishes) from the Devonian has been hampered by imperfect preservation in the majority of taxa. The Late Devonian (early Frasnian) Gogo Formation of north-western Western Australia is notable in producing complete fossil actinopterygians with exceptional three-dimensional preservation of both the dermal and endoskeletal anatomy. Four taxa have been described and have proved invaluable in understanding the anatomy of early representatives of this clade. Here, we present a fifth Gogo...

Data from: Environmental resource deficit may drive the evolution of intraspecific trait variation in invasive plant populations

Shuangshuang Liu, Jared Streich, Justin O. Borevitz, Kevin J. Rice, Tingting Li, Bo Li & Kent J. Bradford
Intraspecific trait variation within natural populations (i.e. intra‐population trait variation, IPTV) is the basic source for selection and can have significant ecological consequences. Higher IPTV may increase a population's niche breath and benefit interspecies competition under a resource‐limited environment, thus affecting the ability of a species to move into novel habitats. However, the reciprocal influences of variation in environmental conditions and phenotypic trait expression in spreading plant populations are not clearly defined. We propose that...

Data from: Dating the species network: allopolyploidy and repetitive DNA evolution in American daisies (Melampodium sect. Melampodium, Asteraceae)

Jamie McCann, Tae-Soo Jang, Jiri Macas, Gerald M. Schneeweiss, Nicholas J. Matzke, Petr Novak, Tod F. Stuessy, Jose L. Villaseñor & Hanna Weiss-Schneeweiss
Allopolyploidy has played an important role in the evolution of the flowering plants. Genome mergers are often accompanied by significant and rapid alterations of genome size and structure via chromosomal rearrangements and altered dynamics of tandem and dispersed repetitive DNA families. Recent developments in sequencing technologies and bioinformatic methods allow for a comprehensive investigation of the repetitive component of plant genomes. Interpretation of evolutionary dynamics following allopolyploidization requires both the knowledge of parentage and the...

Data from: Insular biogeographic origins and high phylogenetic distinctiveness for a recently depleted lizard fauna from Christmas Island, Australia

Paul M. Oliver, Mozes P.K. Blom, Harold G. Cogger, Robert N. Fisher, Jonathan Q. Richmond, John C.Z. Woinarski & John C. Z. Woinarski
Striking faunal turnover across Asia and Australasia, most famously along the eastern edge of the Sunda Shelf or ‘Wallace’s Line’, has been a focus of biogeographic research for over 150 years. Here we investigate the origins of a highly threatened endemic lizard fauna (4 species) on Christmas Island. Despite occurring less 350 km south of the Sunda Shelf, this fauna mostly comprises species from clades centred on the more distant regions of Wallacea, the Pacific...

Data from: Enhancing the steroid sulfatase activity of the arylsulfatase from Pseudomonas aeruginosa

Dimanthi Roshika Uduwela, Anna Pabis, Bradley J. Stevenson, Shina C. L. Kamerlin & Malcolm D. McLeod
Steroidal sulfate esters play a central role in many physiological processes. They serve as the reservoir for endogenous sex hormones and form a significant fraction of the steroid metabolite pool. The analysis of steroid sulfates is thus essential in fields such as medical science and sports drug testing. Although the direct detection of steroid sulfates can be readily achieved using liquid chromatography-mass spectrometry, many analytical approaches, including gas chromatography-mass spectrometry, are hampered due to the...

Data from: An experimental evaluation of traits that influence the sexual behaviour of pollinators in sexually deceptive orchids

Ryan D. Phillips & Rod Peakall
Pollination by sexual deception of male insects is perhaps one of the most remarkable cases of mimicry in the plant kingdom. However, understanding the influence of floral traits on pollinator behaviour in sexually deceptive orchids is challenging, due to the risk of confounding changes in floral odour when manipulating morphology. Here, we investigated the floral traits influencing the sexual response of male Zaspilothynnus nigripes (Tiphiidae) wasps, a pollinator of two distantly related sexually deceptive orchids...

Data from: Larger plants promote a greater diversity of symbiotic nitrogen-fixing soil bacteria associated with an Australian endemic legume

Russell Dinnage, Anna K. Simonsen, Luke G. Barrett, Marcel Cardillo, Nat Raisbeck-Brown, Peter H. Thrall & Suzanne M. Prober
A major goal in microbial ecology is to understand the factors that structure bacterial communities across space and time. For microbes that are plant symbionts, community assembly processes can lead to either a positive or negative relationship between plant size or age and soil microbe diversity. Here, we evaluated the extent to which such relationships exist within a single legume species (Acacia acuminata) and their naturally occurring symbiotic nitrogen-fixing bacteria (rhizobia). 2. We quantified the...

Data from: Electroreception in early vertebrates: survey, evidence and new information

Benedict King, Yuzhi Hu & John A. Long
Electroreception is widespread in living vertebrates, and is often considered a primitive vertebrate character. However, the early evolution of electroreception remains unclear. A variety of structures in early vertebrate fossils have been put forward as potential electroreceptors, but these need to be reassessed in light of the now substantial literature on electroreceptors in living vertebrates. Here we review the evidence for all putative electroreceptors in early vertebrates, and provide new information from CT scans. In...

Data from: Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: new approaches to long-standing problems

Andrea M. Quattrini, Brant C. Faircloth, Luisa F. Dueñas, Thomas C.L. Bridge, Mercer R. Brügler, Ivan F. Calixto-Botía, Danielle M. DeLeo, Sylvain Foret, Santiago Herrera, Simon M.Y. Lee, David J. Miller, Carlos Prada, Gandhi Rádis-Baptista, Catalina Ramírez-Portilla, Juan A. Sánchez, Estefania Rodriguez, Catherine S. McFadden, Tom C. L. Bridge & Simon M. Y. Lee
Anthozoans (e.g., corals, anemones) are an ecologically important and diverse group of marine metazoans that occur from shallow to deep waters worldwide. However, our understanding of the evolutionary relationships among the ~7500 species within this class is hindered by the lack of phylogenetically informative markers that can be reliably sequenced across a diversity of taxa. We designed and tested 16,308 RNA baits to capture 720 Ultraconserved Element loci and 1,071 exon loci. Library preparation and...

Data from: Pervasive admixture between eucalypt species has consequences for conservation and assisted migration

Brenton Von Takach Dukai, Cameron Jack, Justin Borevitz, David B. Lindenmayer & Sam C. Banks
Conservation management often uses information on genetic population structure to assess the importance of local provenancing for ecological restoration and reintroduction programs. For species that do not exhibit complete reproductive isolation, the estimation of population genetic parameters may be influenced by the extent of admixture. Therefore, to avoid perverse outcomes for conservation, genetically-informed management strategies must determine whether hybridisation between species is relevant, and the extent to which observed population genetic patterns are shaped by...

Data from: Prediction error and repetition suppression have distinct effects on neural representations of visual information

Matthew F. Tang, Cooper A. Smout, Ehsan Arabzadeh & Jason B. Mattingley
Predictive coding theories argue that recent experience establishes expectations in the brain that generate prediction errors when violated. Prediction errors provide a possible explanation for repetition suppression, where evoked neural activity is attenuated across repeated presentations of the same stimulus. The predictive coding account argues repetition suppression arises because repeated stimuli are expected, whereas non-repeated stimuli are unexpected and thus elicit larger neural responses. Here we employed electroencephalography in humans to test the predictive coding...

Registration Year

  • 2018
    56

Resource Types

  • Dataset
    56

Affiliations

  • Australian National University
    56
  • Flinders University
    5
  • University of Oxford
    4
  • University of Edinburgh
    3
  • Australian Museum
    3
  • Queensland Museum
    3
  • Commonwealth Scientific and Industrial Research Organisation
    3
  • University of Michigan-Ann Arbor
    2
  • University of Queensland
    2
  • La Trobe University
    2