17 Works

Data from: Genome divergence and diversification within a geographic mosaic of coevolution

Thomas L. Parchman, C. Alex Buerkle, Victor Soria-Carrasco & Craig W. Benkman
Despite substantial interest in coevolution's role in diversification, examples of coevolution contributing to speciation have been elusive. Here, we build upon past studies that have shown both coevolution between South Hills crossbills and lodgepole pine (Pinus contorta), and high levels of reproductive isolation between South Hills crossbills and other ecotypes in the North American red crossbill (Loxia curvirostra) complex. We used genotyping by sequencing to generate population genomic data and applied phylogenetic and population genetic...

Data from: Bees use the taste of pollen to determine which flowers to visit

Felicity Muth, Francis S. Jacob, Anne S. Leonard & Jacob S. Francis
Pollen plays a dual role as both a gametophyte and a nutritional reward for pollinators. Although pollen chemistry varies across plant species, its functional significance in pollination has remained obscure, in part because little is known about how floral visitors assess it. Bees rely on pollen for protein, but whether foragers evaluate its chemistry is unclear, as it is primarily consumed by larvae. We asked whether the chemical composition of pollen influences bumblebees' foraging behaviour....

Data from: Evaluation of downscaled, gridded climate data for the conterminous United States

Ruben Behnke, Stephen Vavrus, Andrew Allstadt, Thomas Albright, Wayne E. Thogmartin & Volker C. Radeloff
Weather and climate affect many ecological processes, making spatially continuous yet fine-resolution weather data desirable for ecological research and predictions. Numerous downscaled weather data sets exist, but little attempt has been made to evaluate them systematically. Here we address this shortcoming by focusing on four major questions: (1) How accurate are downscaled, gridded climate data sets in terms of temperature and precipitation estimates? (2) Are there significant regional differences in accuracy among data sets? (3)...

Data from: A well-defined readily releasable pool with fixed capacity for storing vesicles at calyx of held

Kashif Mahfooz, Robert Renden & John F. Wesseling
The readily releasable pool (RRP) of vesicles is a core concept in studies of presynaptic function. However, operating principles lack consensus definition and the utility for quantitative analysis has been questioned. Here we confirm that RRPs at calyces of Held from 14 to 21 day old mice have a fixed capacity for storing vesicles that is not modulated by Ca2+. Discrepancies with previous studies are explained by a dynamic flow-through pool, established during heavy use,...

Data from: The many dimensions of diet breadth: phytochemical, genetic, behavioral, and physiological perspectives on the interaction between a native herbivore and an exotic host

Joshua G. Harrison, Zachariah Gompert, James A. Fordyce, C. Alex Buerkle, Rachel Grinstead, Joshua P. Jahner, Scott Mikel, Christopher C. Nice, Aldrin Santamaria & Matthew L. Forister
From the perspective of an herbivorous insect, conspecific host plants are not identical, and intraspecific variation in host nutritional quality or defensive capacity might mediate spatially variable outcomes in plant-insect interactions. Here we explore this possibility in the context of an ongoing host breadth expansion of a native butterfly (the Melissa blue, Lycaeides melissa) onto an exotic host plant (alfalfa, Medicago sativa). We examine variation among seven alfalfa populations that differed in terms of colonization...

Data from: Intraspecific phytochemical variation shapes community and population structure for specialist caterpillars

Andrea E. Glassmire, Christopher S. Jeffrey, Matthew L. Forister, Thomas L. Parchman, Chris C. Nice, Joshua P. Jahner, Joseph S. Wilson, Thomas R. Walla, Lora A. Richards, Angela M. Smilanich, Michael D. Leonard, Colin R. Morrison, Wilmer Simbaña, Luis A. Salagaje, Craig D. Dodson, Jim S. Miller, Eric J. Tepe, Santiago Villamarin-Cortez & Lee A. Dyer
Chemically mediated plant–herbivore interactions contribute to the diversity of terrestrial communities and the diversification of plants and insects. While our understanding of the processes affecting community structure and evolutionary diversification has grown, few studies have investigated how trait variation shapes genetic and species diversity simultaneously in a tropical ecosystem. We investigated secondary metabolite variation among subpopulations of a single plant species, Piper kelleyi (Piperaceae), using high-performance liquid chromatography (HPLC), to understand associations between plant phytochemistry...

Data from: Heterogeneity and concordance in locus-specific differentiation and introgression between species of towhees

Sarah E. Kingston, Thomas L. Parchman, Zachariah Gompert, C. Alex Buerkle & Michael J. Braun
The maintenance or breakdown of reproductive isolation are observable outcomes of secondary contact between species. In cases where hybrids beyond the F1 are formed, the representation of each species’ ancestry can vary dramatically among genomic regions. This genomic heterogeneity in ancestry and introgression can offer insight into evolutionary processes, particularly if introgression is compared in multiple hybrid zones. Similarly, considerable heterogeneity exists across the genome in the extent to which populations and species have diverged,...

Data from: Male breeding experience, not mate familiarity, affects reproductive output in black brant geese

Alan Leach & James Sedinger
Individuals in species with long-term social monogamy often incur fitness costs after mate change. We evaluated the relative contributions of mate familiarity and male breeding experience to the costs of mate change of female black brant geese (Branta bernicla nigricans). We assessed the effects of mate change on relative nest initiation date, clutch size, brood size at hatch, growth rates of goslings, and prefledging survival of offspring. We modeled variation in relative nest initiation dates,...

Data from: Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory

Kenji Fukushima, Xiaodong Fang, David Alvarez-Ponce, Huimin Cai, Lorenzo Carretero-Paulet, Cui Chen, Tien-Hao Chang, Kimberley M. Farr, Tomomichi Fujita, Yuji Hiwatashi, Yoshikazu Hoshi, Takamasa Imai, Masahiro Kasahara, Pablo Librado, Likai Mao, Hitoshi Mori, Tomoaki Nishiyama, Masafumi Nozawa, Gergő Pálfalvi, Stephen T. Pollard, Julio Rozas, Alejandro Sánchez-Gracia, David Sankoff, Tomoko F. Shibata, Shuji Shigenobu … & Mitsuyasu Hasebe
Carnivorous plants exploit animals as a nutritional source and have inspired long-standing questions about the origin and evolution of carnivory-related traits. To investigate the molecular bases of carnivory, we sequenced the genome of the heterophyllous pitcher plant Cephalotus follicularis, in which we succeeded in regulating the developmental switch between carnivorous and non-carnivorous leaves. Transcriptome comparison of the two leaf types and gene repertoire analysis identified genetic changes associated with prey attraction, capture, digestion and nutrient...

Data from: Fine scale genetic structure among greater sage-grouse leks in central Nevada

Joshua P. Jahner, Daniel Gibson, Chava L. Weitzman, Erik J. Blomberg, James S. Sedinger & Thomas L. Parchman
Background: Mating systems that reduce dispersal and lead to non-random mating might increase the potential for genetic structure to arise at fine geographic scales. Greater sage-grouse (Centrocercus urophasianus) have a lek-based mating system and exhibit high site fidelity and skewed mating ratios. We quantified population structure by analyzing variation at 27,866 single-nucleotide polymorphisms in 140 males from ten leks (within five lek complexes) occurring in a small geographic region in central Nevada. Results: Lek complexes,...

Data from: A mast-seeding desert shrub regulates population dynamics and behavior of its heteromyid dispersers

Janene Auger, Susan E. Meyer & Stephen H. Jenkins
Granivorous rodent populations in deserts are primarily regulated through precipitation-driven resource pulses rather than pulses associated with mast-seeding, a pattern more common in mesic habitats. We studied heteromyid responses to mast-seeding in the desert shrub blackbrush (Coleogyne ramosissima), a regionally dominant species in the Mojave–Great Basin Desert transition zone. In a 5-year study at Arches National Park, Utah, USA, we quantified spatiotemporal variation in seed resources in mast and intermast years in blackbrush-dominated and mixed...

Data from: Historical contingency in a multigene family facilitates adaptive evolution of toxin resistance

Joel McGlothlin, Megan Kobiela, Chris R. Feldman, Todd A. Castoe, Shana L. Geffeney, Charles T. Hanifin, Gabriela Toledo, Freek J. Vonk, Michael K. Richardson, , Michael Pfrender &
Novel adaptations must originate and function within an already established genome [ 1 ]. As a result, the ability of a species to adapt to new environmental challenges is predicted to be highly contingent on the evolutionary history of its lineage [ 2–6 ]. Despite a growing appreciation of the importance of historical contingency in the adaptive evolution of single proteins [ 7–11 ], we know surprisingly little about its role in shaping complex adaptations...

Data from: Habitat drives dispersal and survival of translocated juvenile desert tortoises

Melia G. Nafus, Todd C. Esque, Roy C. Averill-Murray, Kenneth E. Nussear & Ronald R. Swaisgood
In spite of growing reliance on translocations in wildlife conservation, translocation efficacy remains inconsistent. One factor that can contribute to failed translocations is releasing animals into poor-quality or otherwise inadequate habitat. Here, we used a targeted approach to test the relationship of habitat features to post-translocation dispersal and survival of juvenile Mojave desert tortoises Gopherus agassizii. We selected three habitat characteristics – rodent burrows, substrate texture (prevalence and size of rocks) and washes (ephemeral river...

Data from: Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation

Rebecca J. Safran, Elizabeth S. C. Scordato, Matthew R. Wilkins, Joanna K. Hubbard, Brittany R. Jenkins, Tomas Albrecht, Samuel M. Flaxman, Hakan Karaardic, Yoni Vortman, Arnon Lotem, Patrik Nosil, Péter Pap, Sheng-Feng Shen, Shih-Fan Chan, Thomas L. Parchman, Nolan C. Kane, S.-F. Chan & T.L. Parchman
Population divergence in geographic isolation is due to a combination of factors. Natural and sexual selection may be important in shaping patterns of population differentiation, a pattern referred to as ‘isolation by adaptation’ (IBA). IBA can be complementary to the well-known pattern of ‘isolation by distance’ (IBD), in which the divergence of closely related populations (via any evolutionary process) is associated with geographic isolation. The barn swallow Hirundo rustica complex comprises six closely related subspecies,...

Data from: Estimating species richness using environmental DNA

Brett P. Olds, Christopher L. Jerde, Mark A. Renshaw, Yiyuan Li, Nathan T. Evans, Cameron R. Turner, Kristy Deiner, Andrew R. Mahon, Michael A. Brueseke, Patrick D. Shirey, Michael E. Pfrender, David M. Lodge & Gary A. Lamberti
The foundation for any ecological study and the for effective management of biodiversity in natural systems requires knowing what species are present in an ecosystem. We assessed fish communities in a stream using two methods, depletion-based electrofishing and environmental DNA metabarcoding (eDNA) from water samples, to test the hypothesis that eDNA provides an alternative means of determining species richness and species identities for a natural ecosystem. In a northern Indiana stream, electrofishing yielded a direct...

Data from: Patterns in parasitism frequency explained by diet and immunity

Alyssa C. Hansen, Andrea E. Glassmire, Lee A. Dyer & Angela M. Smilanich
We sought to explain patterns in parasitism frequency of two specialist herbivores (Geometridae) by investigating the influence of plant diet as a source of variation in immune response variables important for defense against parasitism. Field collected caterpillars (Eois apyraria and Eois nympha) were assigned to one of two species in the plant genus Piper (Piperaceae): 1) a host species with high diversity of defensive chemistry, P. cenocladum C.DC., or 2) a host species with lower...

Data from: Phenotypic differentiation is associated with divergent sexual selection among closely related barn swallow populations

Matthew R. Wilkins, Hakan Karaardıç, Yoni Vortman, Thomas L. Parchman, Tomáš Albrecht, Adéla Petrželková, Leyla Özkan, Peter L. Pap, Joanna K. Hubbard, Amanda K. Hund & Rebecca J. Safran
Sexual selection plays a key role in the diversification of numerous animal clades and may accelerate trait divergence during speciation. However, much of our understanding of this process comes from phylogenetic comparative studies, which rely on surrogate measures such as dimorphism that may not represent selection in wild populations. In this study, we assess sexual selection pressures for multiple male visual signals across four barn swallow (Hirundo rustica) populations. Our sample encompassed 2400 linear km...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of Nevada Reno
  • Utah State University
  • University of Wyoming
  • The University of Texas at Austin
  • University of Notre Dame
  • Charles University
  • University of Colorado Boulder
  • United States Geological Survey
  • Tel Aviv University
  • Notre Dame University